C1QBP
gene geneOn this page
Also known as gC1Q-RgC1qRp32SF2p32
Summary
C1QBP (complement C1q binding protein, HGNC:1243) is a protein-coding gene on chromosome 17p13.2, encoding Complement component 1 Q subcomponent-binding protein, mitochondrial (Q07021). Multifunctional and multicompartmental protein involved in inflammation and infection processes, ribosome biogenesis, protein synthesis in mitochondria, regulation of apoptosis, transcriptional regulation and pre-mRNA splicing. It is a selective cancer dependency (DepMap: 34.0% of cell lines).
The human complement subcomponent C1q associates with C1r and C1s in order to yield the first component of the serum complement system. The protein encoded by this gene is known to bind to the globular heads of C1q molecules and inhibit C1 activation. This protein has also been identified as the p32 subunit of pre-mRNA splicing factor SF2, as well as a hyaluronic acid-binding protein.
Source: NCBI Gene 708 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial disease (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 216 total — 12 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 31
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 34.0% of screened cell lines
- MANE Select transcript:
NM_001212
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1243 |
| Approved symbol | C1QBP |
| Name | complement C1q binding protein |
| Location | 17p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | gC1Q-R, gC1qR, p32, SF2p32 |
| Ensembl gene | ENSG00000108561 |
| Ensembl biotype | protein_coding |
| OMIM | 601269 |
| Entrez | 708 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding, 3 retained_intron
ENST00000225698, ENST00000570805, ENST00000573204, ENST00000573406, ENST00000573421, ENST00000574444, ENST00000576122
RefSeq mRNA: 1 — MANE Select: NM_001212
NM_001212
CCDS: CCDS11071
Canonical transcript exons
ENST00000225698 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000678412 | 5432777 | 5433164 |
| ENSE00000678416 | 5433669 | 5433767 |
| ENSE00000678419 | 5434873 | 5434966 |
| ENSE00003529463 | 5438123 | 5438273 |
| ENSE00003626118 | 5438842 | 5439155 |
| ENSE00003662948 | 5433293 | 5433415 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 98.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 169.8691 / max 1251.6687, expressed in 1827 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 164027 | 169.8691 | 1827 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 98.61 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.43 | gold quality |
| rectum | UBERON:0001052 | 98.41 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.38 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.34 | gold quality |
| adrenal tissue | UBERON:0018303 | 98.31 | gold quality |
| islet of Langerhans | UBERON:0000006 | 98.20 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.20 | gold quality |
| cortical plate | UBERON:0005343 | 98.11 | gold quality |
| adrenal gland | UBERON:0002369 | 98.06 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.80 | gold quality |
| adenohypophysis | UBERON:0002196 | 97.78 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.64 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.58 | gold quality |
| muscle of leg | UBERON:0001383 | 97.57 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 97.48 | gold quality |
| transverse colon | UBERON:0001157 | 97.45 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.41 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.41 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.40 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 97.33 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 97.31 | gold quality |
| embryo | UBERON:0000922 | 97.30 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 97.24 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.22 | gold quality |
| cardiac ventricle | UBERON:0002082 | 97.19 | gold quality |
| apex of heart | UBERON:0002098 | 97.19 | gold quality |
| cingulate cortex | UBERON:0003027 | 97.18 | gold quality |
| esophagus | UBERON:0001043 | 97.13 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.98 | gold quality |
Single-cell (SCXA)
Detected in 14 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-8 | yes | 51.58 |
| E-GEOD-125970 | yes | 47.41 |
| E-GEOD-134144 | yes | 26.99 |
| E-MTAB-9067 | yes | 22.54 |
| E-CURD-122 | yes | 20.65 |
| E-CURD-112 | yes | 19.17 |
| E-MTAB-10042 | yes | 14.47 |
| E-MTAB-9801 | yes | 6.71 |
| E-MTAB-9689 | no | 1092.07 |
| E-MTAB-6911 | no | 854.37 |
| E-GEOD-76312 | no | 380.40 |
| E-MTAB-8271 | no | 8.97 |
| E-HCAD-31 | no | 2.69 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MYC, SP1
miRNA regulators (miRDB)
28 targeting C1QBP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-LET-7A-2-3P | 99.87 | 70.53 | 1921 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-LET-7G-3P | 99.85 | 70.43 | 1929 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-1252-3P | 99.55 | 67.71 | 2862 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
| HSA-MIR-32-3P | 99.36 | 68.20 | 2517 |
| HSA-MIR-135A-5P | 99.36 | 71.85 | 1601 |
| HSA-MIR-135B-5P | 99.36 | 71.63 | 1613 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-4763-5P | 98.75 | 63.89 | 854 |
| HSA-MIR-96-3P | 97.47 | 68.03 | 839 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 34.0% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- increase in expression over the rostral portion of the sperm head after capacitation; may play a role in human fertilization (PMID:11870091)
- demonstrate that MT1-MMP via its cytoplasmic tail directly associates with a chaperone-like compartment-specific regulator gC1qR (PMID:12220632)
- presence of homologous sequences of HABP1 cDNA, termed processed HABP1 pseudogene, in humans (PMID:12443542)
- Maturation-dependent expression of this protein in monocyte-derived dendritic cells. (PMID:12538033)
- gC1qR expressed on activated platelets may contribute directly to thrombosis, inflammation, and endovascular infections. (PMID:12574814)
- binds with Hepacivirus core protein on CD8+ and CD4+ positive t-cells and inactivates lck and akt. (PMID:15163734)
- Human p32 functions as a corepressor of CCAAT-binding factor-mediated transcription activation. (PMID:15243141)
- data suggest that gC1qR may participate in tissue remodeling and inflammation by localizing TFPI-2 to the pericellular environment to modulate local protease activity and regulate High Molecular Weight Kininogen activation (PMID:15467913)
- HABP1 expression in Schizosaccharomyces pombe induces growth inhibition, morphological abnormalities like elongation, multinucleation and aberrant cell septum formation, implicating its role in cell cycle progression and cytokinesis (PMID:16039650)
- C1q functions as a chemotactic factor for immature dendritic cells, and migration is mediated through ligation of both gC1qR and cC1qR/CR. (PMID:16140380)
- These studies suggest that HCV core protein can lead to enhanced p38- and gC1qR-dependent IL-8 expression. (PMID:16164755)
- gC1qR down-regulates interleukin-12 production by signaling through 1-phosphatidylinositol 3-kinase. This is the first report to identify signaling pathways used by gC1qR-mediated immune suppression. (PMID:16177118)
- p32 overexpression effectively blocks mRNA accumulation from the adenovirus major late transcription unit (MLTU) and stimulates RNA polymerase II carboxy-terminal domain phosphorylation in virus-infected cells. (PMID:16641292)
- we speculate that the epitope of gC1qR is unmasked in the germ cell lineage; by reducing gC1qR by siRNA, an increase was observed in the number of apoptotic cells in ITO-II & TCam-2 cell lines showing an antiapoptotic property of gC1qR in the germ cells (PMID:16871385)
- Data suggest that gC1qR serves as a molecular bridge between the complement and contact activation systems and is an important catalyst in inflammation. (PMID:16893067)
- Engagement of gC1qR on dendritic cells by hepatitis C virus core protein limits the induction of Th1 responses by inhibiting TLR-induced IL-12 production and may contribute to viral persistence. (PMID:17881511)
- These data suggest a role for gC1qR in the initial stages of Bacillus cereus spore attachment and/or entry. (PMID:17892212)
- P. falciparum-infected red blood cells use the 32-kDa human protein gC1qR/HABP1/p32 as a receptor to bind to human brain microvascular endothelial cells. (PMID:17907801)
- Data demonstrated a direct and specific interaction between vasopressin V2 receptor and GC1q-Rthese two proteins via the arginine cluster of vasopressin V2 receptor. (PMID:18358546)
- Differential isoform expression and interaction with the P32 regulatory protein controls the subcellular localization of the splicing factor U2AF26 (PMID:18460468)
- Mitochondrial p32/C1QBP is a critical mediator of p14ARF-induced apoptosis. (PMID:18538737)
- Failure of p32 to interact with FOXC1 containing the disease-causing F112S mutation indicates that impaired protein interaction may be a disease mechanism for AR malformations. (PMID:18676636)
- results establish p32, particularly its cell-surface-expressed form, as a new marker of tumor cells and tumor-associated macrophages/myeloid cells in hypoxic/metabolically deprived areas of tumors (PMID:18757437)
- Evidence for inhibitory interaction of hyaluronan-binding protein 1 (HABP1/p32/gC1qR) with Streptococcus pneumoniae hyaluronidase. (PMID:19004836)
- gC1qR is a physiological inhibitor of the RIG-I and MDA5-mediated antiviral signaling pathway (PMID:19164550)
- Cryoglobulins were present in over 90% of Chikungunya infection patients. Cryoglobulin frequency and levels decreased with time in recovering patients. (PMID:19190731)
- results suggest that HCV infection expands gC1qR+CD4+ T cells, which increase the susceptibility to core-mediated immune dysregulation and facilitate the establishment of HCV persistency (PMID:19473882)
- HABP1 mRNA expression level was a significant factor for predicting breast cancer prognosis (PMID:19565630)
- Dysregulated shedding of C1q-R molecules contributes to vascular cryoglobulin-induced damage via the classic complement-mediated pathway in chronically hepatitis C-infected patients, with and without mixed cryoglobulinemia. (PMID:19828637)
- Knocking down p32 expression in human cancer cells strongly shifts their metabolism from oxidative phosphorylation (OXPHOS) to glycolysis. (PMID:20100866)
- the potential of p32 for antibody-based tumor targeting strategies and the utility of the 2.15 antibody as targeting moiety for the selective delivery of imaging and therapeutic agents to tumors. (PMID:21156793)
- p32 is highly expressed in prostate tumor samples and its expression is significantly associated with the Gleason score, pathological stage and relapse (PMID:21205079)
- The data presented suggest that p32 fulfills an essential function for rubella virus replication in directing trafficking of mitochondria near sites of viral replication to meet the energy demands of the virus. (PMID:21248045)
- cell-surface gC1qR regulates lamellipodia formation and metastasis via receptor tyrosine kinase activation. (PMID:21536672)
- p32 is a new rRNA maturation factor involved in the remodeling from pre-90S particles to pre-40S and pre-60S particles that requires the exchange of FBL for Nop52. (PMID:21536856)
- there is a a role for platelet-mediated clumping, rosetting and adhesion to gC1qR in the pathogenesis of severe malaria (PMID:21559373)
- HABP1 interacts with cell surface receptor integrin alphaVbeta3 that induces cell migration and tumor growth mediated by transcription factor NF-kappa B, membrane type-1 matrix metalloproteinase and matrix metalloprotease-2. (PMID:21627988)
- gC1qR could play an important role in HPV-16-induced cervical cancer immune evasion depending on its level of expression and subcellular localisation. (PMID:21725590)
- we have identified a mitochondrial protein p32 as a novel interactor of parkin in the brain (PMID:22008525)
- C1qbp is upregulated in human lung and colon cancer cell lines and tumors. (PMID:22101277)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | c1qbp | ENSDARG00000039887 |
| mus_musculus | C1qbp | ENSMUSG00000018446 |
| rattus_norvegicus | C1qbp | ENSRNOG00000006949 |
| drosophila_melanogaster | P32 | FBGN0034259 |
| caenorhabditis_elegans | WBGENE00010303 |
Protein
Protein identifiers
Complement component 1 Q subcomponent-binding protein, mitochondrial — Q07021 (reviewed: Q07021)
Alternative names: ASF/SF2-associated protein p32, Glycoprotein gC1qBP, Hyaluronan-binding protein 1, Mitochondrial matrix protein p32, gC1q-R protein, p33
All UniProt accessions (4): Q07021, A0A0G2JLC0, I3L3B0, I3L3Q7
UniProt curated annotations — full annotation on UniProt →
Function. Multifunctional and multicompartmental protein involved in inflammation and infection processes, ribosome biogenesis, protein synthesis in mitochondria, regulation of apoptosis, transcriptional regulation and pre-mRNA splicing. At the cell surface is thought to act as an endothelial receptor for plasma proteins of the complement and kallikrein-kinin cascades. Putative receptor for C1q; specifically binds to the globular ‘heads’ of C1q thus inhibiting C1; may perform the receptor function through a complex with C1qR/CD93. In complex with cytokeratin-1/KRT1 is a high affinity receptor for kininogen-1/HMWK. Can also bind other plasma proteins, such as coagulation factor XII leading to its autoactivation. May function to bind initially fluid kininogen-1 to the cell membrane. The secreted form may enhance both extrinsic and intrinsic coagulation pathways. It is postulated that the cell surface form requires docking with transmembrane proteins for downstream signaling which might be specific for a cell-type or response. By acting as C1q receptor is involved in chemotaxis of immature dendritic cells and neutrophils and is proposed to signal through CD209/DC-SIGN on immature dendritic cells, through integrin alpha-4/beta-1 during trophoblast invasion of the decidua, and through integrin beta-1 during endothelial cell adhesion and spreading. Signaling involved in inhibition of innate immune response is implicating the PI3K-AKT/PKB pathway. Required for protein synthesis in mitochondria. In mitochondrial translation may be involved in formation of functional 55S mitoribosomes; the function seems to involve its RNA-binding activity. Acts as a RNA modification reader, which specifically recognizes and binds mitochondrial RNAs modified by C5-methylcytosine (m5C) in response to stress, and promotes recruitment of the mitochondrial degradosome complex, leading to their degradation. May be involved in the nucleolar ribosome maturation process; the function may involve the exchange of FBL for RRP1 in the association with pre-ribosome particles. Involved in regulation of RNA splicing by inhibiting the RNA-binding capacity of SRSF1 and its phosphorylation. Is required for the nuclear translocation of splicing factor U2AF1L4. Involved in regulation of CDKN2A- and HRK-mediated apoptosis. Stabilizes mitochondrial CDKN2A isoform smARF. May be involved in regulation of FOXC1 transcriptional activity and NFY/CCAAT-binding factor complex-mediated transcription. May play a role in antibacterial defense as it can bind to cell surface hyaluronan and inhibit Streptococcus pneumoniae hyaluronate lyase. May be involved in modulation of the immune response; ligation by HCV core protein is resulting in suppression of interleukin-12 production in monocyte-derived dendritic cells. Involved in regulation of antiviral response by inhibiting RIGI- and IFIH1-mediated signaling pathways probably involving its association with MAVS after viral infection. Acts as a regulator of DNA repair via homologous recombination by inhibiting the activity of MRE11: interacts with unphosphorylated MRE11 and RAD50 in absence of DNA damage, preventing formation and activity of the MRN complex. Following DNA damage, dissociates from phosphorylated MRE11, allowing formation of the MRN complex. (Microbial infection) Involved in HIV-1 replication, presumably by contributing to splicing of viral RNA. (Microbial infection) In infection processes acts as an attachment site for microbial proteins, including Listeria monocytogenes internalin B (InlB) and Staphylococcus aureus protein A. (Microbial infection) Involved in replication of Rubella virus.
Subunit / interactions. Homotrimer; three monomers form a donut-shaped structure with an unusually asymmetric charge distribution on the surface. Interacts with CDK13, HRK, VTN, NFYB, ADRA1B, FOXC1, DDX21, DDX50, NCL, SRSF1, SRSF9 and CDKN2A isoform smARF. Interacts with CD93; the association may represent a cell surface C1q receptor. Interacts with KRT1; the association represents a cell surface kininogen receptor. Interacts with CD209; the interaction is indicative for a C1q:C1QBP:CD209 signaling complex. Interacts with FBL and RRP1; the respective interactions with C1QBP are competitive. Probably associates with the mitoribosome. Interacts with MAVS; the interaction occurs upon viral transfection. Interacts with PPIF. Interacts with U2AF1L4. Interacts with PLEKHN1. Interacts with VGF-derived peptide TLQP-21. Interacts with POLGARF which is produced from an alternative reading frame of the POLG gene; the interaction results in nucleolar localization of C1QBP, probably due to prevention of C1QBP maturation and redirection from mitochondria to nucleoli. Interacts with MRE11 and RAD50; forming the MRC (MRE11-RAD50-C1QBP) complex that inhibits the activity of MRE11. Interacts with MTALTND4, a small protein produced by an alternative reading frame of the MT-ND4 gene. (Microbial infection) Interacts with Rubella virus capsid protein; the interaction occurs in mitochondria. Interacts with Rubella virus protease/methyltransferase p150. (Microbial infection) Interacts with Staphylococcus aureus protein A/spa. (Microbial infection) Interacts with Staphylococcus aureus protein A/spa, HIV-1 Tat and HCV core protein. (Microbial infection) Interacts with HIV-1 Tat and HCV core protein. (Microbial infection) Interacts with L.monocytogenes internalin B. (Microbial infection) Interacts with Epstein-Barr virus EBNA1.
Subcellular location. Mitochondrion matrix. Nucleus. Nucleolus. Cell membrane. Secreted. Cytoplasm.
Tissue specificity. Expressed on cell surface of peripheral blood cells (at protein level); Surface expression is reported for macrophages and monocyte-derived dendritic cells.
Disease relevance. Combined oxidative phosphorylation deficiency 33 (COXPD33) [MIM:617713] An autosomal recessive disorder caused by multiple mitochondrial respiratory chain defects and impaired mitochondrial energy metabolism. Clinical manifestations are highly variable. Affected infants present with cardiomyopathy accompanied by multisystemic features involving liver, kidney, and brain. Death in infancy is observed in some patients. Children and adults present with myopathy and progressive external ophthalmoplegia. The disease is caused by variants affecting the gene represented in this entry.
Induction. Enhanced cell surface expression upon platelet and monocyte activation.
Similarity. Belongs to the MAM33 family.
RefSeq proteins (1): NP_001203* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003428 | MAM33 | Family |
| IPR036561 | MAM33_sf | Homologous_superfamily |
Pfam: PF02330
UniProt features (32 total): strand 8, modified residue 6, sequence variant 6, helix 5, region of interest 3, transit peptide 1, chain 1, mutagenesis site 1, turn 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7TE3 | X-RAY DIFFRACTION | 2.2 |
| 1P32 | X-RAY DIFFRACTION | 2.25 |
| 3RPX | X-RAY DIFFRACTION | 2.65 |
| 6SZW | X-RAY DIFFRACTION | 3.14 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q07021-F1 | 76.12 | 0.54 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 214, 87, 91, 188, 201, 205
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 107 | impairs hiv rna splicing in mouse cells. |
Function
Pathways and Gene Ontology
Reactome pathways
19 pathways
| ID | Pathway |
|---|---|
| R-HSA-111471 | Apoptotic factor-mediated response |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013106 | RHOC GTPase cycle |
| R-HSA-9645722 | Defective Intrinsic Pathway for Apoptosis Due to p14ARF Loss of Function |
| R-HSA-9855719 | Regulation of FXIIa and plasma kallikrein activity |
| R-HSA-9970672 | FXIIa activates plasma kallikrein-kinin system |
| R-HSA-140837 | |
| R-HSA-109581 | Apoptosis |
| R-HSA-109582 | Hemostasis |
| R-HSA-109606 | Intrinsic Pathway for Apoptosis |
| R-HSA-140877 | |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-5357801 | Programmed Cell Death |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9645723 | Diseases of programmed cell death |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
| R-HSA-9734009 | Defective Intrinsic Pathway for Apoptosis |
MSigDB gene sets: 521 (showing top):
GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, GOBP_RIBOSOME_BIOGENESIS, GOBP_REGULATION_OF_DNA_RECOMBINATION, GOBP_POSITIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, HORIUCHI_WTAP_TARGETS_DN, GOBP_DENDRITIC_CELL_MIGRATION, GOBP_MYELOID_LEUKOCYTE_MIGRATION, GOBP_CELL_CHEMOTAXIS, GOBP_REGULATION_OF_DEFENSE_RESPONSE_TO_VIRUS, GOBP_NEGATIVE_REGULATION_OF_DNA_REPAIR, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN, GOBP_NEGATIVE_REGULATION_OF_DNA_RECOMBINATION, GOBP_NEGATIVE_REGULATION_OF_RNA_SPLICING
GO Biological Process (31): negative regulation of transcription by RNA polymerase II (GO:0000122), mitochondrial RNA catabolic process (GO:0000957), mRNA processing (GO:0006397), apoptotic process (GO:0006915), immune response (GO:0006955), complement activation, classical pathway (GO:0006958), DNA damage response (GO:0006974), RNA splicing (GO:0008380), regulation of complement activation (GO:0030449), negative regulation of type II interferon production (GO:0032689), negative regulation of interleukin-12 production (GO:0032695), negative regulation of MDA-5 signaling pathway (GO:0039534), negative regulation of RIG-I signaling pathway (GO:0039536), cytosolic ribosome assembly (GO:0042256), positive regulation of apoptotic process (GO:0043065), phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0043491), innate immune response (GO:0045087), positive regulation of cell adhesion (GO:0045785), negative regulation of mRNA splicing, via spliceosome (GO:0048025), negative regulation of defense response to virus (GO:0050687), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), positive regulation of mitochondrial translation (GO:0070131), positive regulation of neutrophil chemotaxis (GO:0090023), positive regulation of substrate adhesion-dependent cell spreading (GO:1900026), positive regulation of trophoblast cell migration (GO:1901165), negative regulation of double-strand break repair via homologous recombination (GO:2000042), positive regulation of dendritic cell chemotaxis (GO:2000510), double-strand break repair via homologous recombination (GO:0000724), adaptive immune response (GO:0002250), immune system process (GO:0002376), ribosome biogenesis (GO:0042254)
GO Molecular Function (13): complement component C1q complex binding (GO:0001849), transcription corepressor activity (GO:0003714), mRNA binding (GO:0003729), enzyme inhibitor activity (GO:0004857), protein kinase C binding (GO:0005080), hyaluronic acid binding (GO:0005540), transcription factor binding (GO:0008134), kininogen binding (GO:0030984), adrenergic receptor binding (GO:0031690), C5-methylcytidine-containing RNA reader activity (GO:0062153), mitochondrial ribosome binding (GO:0097177), protein binding (GO:0005515), deoxyribonuclease inhibitor activity (GO:0060703)
GO Cellular Component (14): obsolete extracellular space (GO:0005615), nucleus (GO:0005634), nucleolus (GO:0005730), cytoplasm (GO:0005737), mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), cytosol (GO:0005829), plasma membrane (GO:0005886), cell surface (GO:0009986), membrane (GO:0016020), presynaptic active zone (GO:0048786), glutamatergic synapse (GO:0098978), GABA-ergic synapse (GO:0098982), extracellular region (GO:0005576)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 2 |
| Intrinsic Pathway for Apoptosis | 1 |
| Defective Intrinsic Pathway for Apoptosis | 1 |
| FXIIa activates plasma kallikrein-kinin system | 1 |
| Innate Immune System | 1 |
| Programmed Cell Death | 1 |
| Apoptosis | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Signaling by Rho GTPases | 1 |
| Disease | 1 |
| Signal Transduction | 1 |
| Diseases of programmed cell death | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| negative regulation of DNA-templated transcription | 2 |
| mitochondrion | 2 |
| RNA processing | 2 |
| complement activation | 2 |
| negative regulation of cytokine production | 2 |
| negative regulation of cytoplasmic pattern recognition receptor signaling pathway | 2 |
| RNA binding | 2 |
| protein binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| synapse | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| mitochondrial RNA metabolic process | 1 |
| RNA catabolic process | 1 |
| mRNA metabolic process | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| immune system process | 1 |
| response to stimulus | 1 |
| humoral immune response mediated by circulating immunoglobulin | 1 |
| cellular response to stress | 1 |
| regulation of immune effector process | 1 |
| regulation of humoral immune response | 1 |
| type II interferon production | 1 |
| regulation of type II interferon production | 1 |
| interleukin-12 production | 1 |
| regulation of interleukin-12 production | 1 |
| MDA-5 signaling pathway | 1 |
| regulation of MDA-5 signaling pathway | 1 |
| RIG-I signaling pathway | 1 |
| regulation of RIG-I signaling pathway | 1 |
| ribosome assembly | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| intracellular signaling cassette | 1 |
| immune response | 1 |
Protein interactions and networks
STRING
2773 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C1QBP | KNG1 | P01042 | 987 |
| C1QBP | KRT1 | P04264 | 949 |
| C1QBP | PTPN22 | Q9Y2R2 | 942 |
| C1QBP | VTN | P01141 | 932 |
| C1QBP | EMD | P50402 | 834 |
| C1QBP | CD209 | Q9NNX6 | 771 |
| C1QBP | CD93 | Q9NPY3 | 738 |
| C1QBP | CALR | P27797 | 726 |
| C1QBP | SRSF1 | Q07955 | 726 |
| C1QBP | PLAUR | Q03405 | 715 |
| C1QBP | C3AR1 | Q16581 | 678 |
| C1QBP | C5AR1 | P21730 | 626 |
| C1QBP | C1QA | P02745 | 625 |
| C1QBP | CD55 | P08174 | 577 |
| C1QBP | CR1 | P17927 | 573 |
IntAct
693 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRKCZ | PRKCI | psi-mi:“MI:0914”(association) | 0.890 |
| YWHAH | ABLIM1 | psi-mi:“MI:0914”(association) | 0.800 |
| FBL | NOP56 | psi-mi:“MI:0914”(association) | 0.800 |
| NPM2 | NPM3 | psi-mi:“MI:0914”(association) | 0.800 |
| OSM | IL6ST | psi-mi:“MI:0914”(association) | 0.760 |
| LYRM2 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.730 |
| NDUFS3 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.730 |
| PRELID3B | TRIAP1 | psi-mi:“MI:0914”(association) | 0.710 |
| COQ8A | COQ9 | psi-mi:“MI:0914”(association) | 0.670 |
| NEUROG3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.640 |
| NOP53 | RRP8 | psi-mi:“MI:0914”(association) | 0.640 |
| RSRP1 | C1QBP | psi-mi:“MI:0914”(association) | 0.640 |
| LYRM4 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFAF4 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| SDHAF3 | NDUFAB1 | psi-mi:“MI:0914”(association) | 0.640 |
| DDX3X | psi-mi:“MI:0914”(association) | 0.630 | |
| DUX4L9 | C1QBP | psi-mi:“MI:0915”(physical association) | 0.620 |
| C1QBP | psi-mi:“MI:0915”(physical association) | 0.560 | |
| C1QBP | psi-mi:“MI:0915”(physical association) | 0.560 | |
| C1QBP | psi-mi:“MI:0403”(colocalization) | 0.560 | |
| C1QBP | DUX4 | psi-mi:“MI:0915”(physical association) | 0.540 |
| RPS6 | IPO7 | psi-mi:“MI:0914”(association) | 0.530 |
| NEURL4 | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB10 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF707 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| RPS2 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (1068): C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS), C1QBP (Affinity Capture-MS)
ESM2 similar proteins: A1L1P7, A6ZND9, A6ZSH0, B0BN56, B3LIY9, B3LPE4, B5VQB0, C5DKM2, D3ZYW7, F4I9Q5, O14320, O35658, O35796, O35943, O49196, P37841, P42797, P42844, P49727, P51132, P51133, P51135, P82928, Q01607, Q04907, Q05B87, Q07021, Q08230, Q09759, Q0IH40, Q16595, Q1JPN0, Q2KI49, Q3T0B6, Q5REH5, Q84WZ8, Q8HXX9, Q8N5N7, Q8VZE7, Q94JS0
Diamond homologs: O35658, O35796, Q07021, Q3T0B6, Q9MZE0
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| C1QBP | “up-regulates activity” | KRT1 | binding |
| C1QBP | “down-regulates activity” | “Complement C1q” | binding |
| C1QBP | “down-regulates activity” | C1QA | binding |
| C1QBP | “down-regulates activity” | C1QB | binding |
| C1QBP | “down-regulates activity” | C1QC | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 226 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Mitochondrial protein import | 9 | 10.3× | 5e-05 |
| Complex I biogenesis | 8 | 9.0× | 4e-04 |
| Mitochondrial protein degradation | 10 | 7.8× | 1e-04 |
| Aerobic respiration and respiratory electron transport | 12 | 7.2× | 3e-05 |
| Respiratory electron transport | 10 | 6.5× | 4e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ubiquinone biosynthetic process | 6 | 28.4× | 5e-05 |
| mitochondrial respiratory chain complex I assembly | 7 | 14.5× | 3e-04 |
| mitochondrial electron transport, NADH to ubiquinone | 6 | 10.9× | 3e-03 |
| intrinsic apoptotic signaling pathway | 6 | 10.9× | 3e-03 |
| proton motive force-driven mitochondrial ATP synthesis | 7 | 9.3× | 3e-03 |
| cellular response to UV | 6 | 9.0× | 7e-03 |
| G1/S transition of mitotic cell cycle | 8 | 8.1× | 3e-03 |
| cytoplasmic translation | 7 | 6.5× | 1e-02 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
216 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 12 |
| Likely pathogenic | 2 |
| Uncertain significance | 75 |
| Likely benign | 97 |
| Benign | 16 |
Top pathogenic / likely-pathogenic (14)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1453425 | NM_001212.4(C1QBP):c.736C>T (p.Arg246Ter) | Pathogenic |
| 2028678 | NM_001212.4(C1QBP):c.240_249del (p.Ala81fs) | Pathogenic |
| 2423977 | NC_000017.10:g.(?5336335)(5337107_?)del | Pathogenic |
| 2828245 | NM_001212.4(C1QBP):c.429_448del (p.Asp144fs) | Pathogenic |
| 3243138 | NC_000017.10:g.(?5289526)(5342393_?)del | Pathogenic |
| 3243139 | NC_000017.10:g.(?5341423)(5342393_?)del | Pathogenic |
| 3715982 | NM_001212.4(C1QBP):c.608TCT[1] (p.Phe204del) | Pathogenic |
| 3728322 | NM_001212.4(C1QBP):c.457C>T (p.Gln153Ter) | Pathogenic |
| 441243 | NM_001212.4(C1QBP):c.824T>C (p.Leu275Pro) | Pathogenic |
| 441244 | NM_001212.4(C1QBP):c.739G>T (p.Gly247Trp) | Pathogenic |
| 441245 | NM_001212.4(C1QBP):c.823C>T (p.Leu275Phe) | Pathogenic |
| 4727049 | NM_001212.4(C1QBP):c.466_467insTA (p.Glu156fs) | Pathogenic |
| 2905520 | NM_001212.4(C1QBP):c.577-1G>A | Likely pathogenic |
| 3767574 | NM_001212.4(C1QBP):c.118dup (p.Thr40fs) | Likely pathogenic |
SpliceAI
744 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:5433160:AAGGC:A | acceptor_gain | 1.0000 |
| 17:5433161:AGGC:A | acceptor_gain | 1.0000 |
| 17:5433162:GGC:G | acceptor_gain | 1.0000 |
| 17:5433163:GC:G | acceptor_gain | 1.0000 |
| 17:5433164:CC:C | acceptor_gain | 1.0000 |
| 17:5433165:C:CC | acceptor_gain | 1.0000 |
| 17:5433168:C:CT | acceptor_gain | 1.0000 |
| 17:5433169:A:T | acceptor_gain | 1.0000 |
| 17:5433286:CACT:C | donor_loss | 1.0000 |
| 17:5433287:ACTC:A | donor_loss | 1.0000 |
| 17:5433288:CT:C | donor_loss | 1.0000 |
| 17:5433289:TCA:T | donor_loss | 1.0000 |
| 17:5433290:CACCC:C | donor_loss | 1.0000 |
| 17:5433291:A:AC | donor_gain | 1.0000 |
| 17:5433291:AC:A | donor_gain | 1.0000 |
| 17:5433292:C:CC | donor_gain | 1.0000 |
| 17:5433292:CC:C | donor_gain | 1.0000 |
| 17:5433370:C:A | donor_gain | 1.0000 |
| 17:5433411:CCAAC:C | acceptor_gain | 1.0000 |
| 17:5433412:CAAC:C | acceptor_gain | 1.0000 |
| 17:5433412:CAACC:C | acceptor_gain | 1.0000 |
| 17:5433414:AC:A | acceptor_gain | 1.0000 |
| 17:5433415:CC:C | acceptor_gain | 1.0000 |
| 17:5433416:C:CC | acceptor_gain | 1.0000 |
| 17:5433664:CATA:C | donor_loss | 1.0000 |
| 17:5433665:ATAC:A | donor_loss | 1.0000 |
| 17:5433666:TAC:T | donor_loss | 1.0000 |
| 17:5433667:A:T | donor_loss | 1.0000 |
| 17:5433668:C:A | donor_loss | 1.0000 |
| 17:5433763:TCAGG:T | acceptor_gain | 1.0000 |
AlphaMissense
1841 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:5434958:A:T | V131D | 1.000 |
| 17:5433040:A:G | L275P | 0.999 |
| 17:5433049:A:G | L272P | 0.999 |
| 17:5433062:A:G | Y268H | 0.999 |
| 17:5433084:G:C | S260R | 0.999 |
| 17:5433084:G:T | S260R | 0.999 |
| 17:5433086:T:G | S260R | 0.999 |
| 17:5433097:A:G | L256P | 0.999 |
| 17:5433127:C:G | R246P | 0.999 |
| 17:5433136:A:G | L243P | 0.999 |
| 17:5433136:A:T | L243H | 0.999 |
| 17:5433148:A:G | L239P | 0.999 |
| 17:5433687:A:C | C186W | 0.999 |
| 17:5433689:A:G | C186R | 0.999 |
| 17:5433736:A:T | V170D | 0.999 |
| 17:5433742:A:G | F168S | 0.999 |
| 17:5433748:G:T | P166H | 0.999 |
| 17:5438181:A:G | W109R | 0.999 |
| 17:5438181:A:T | W109R | 0.999 |
| 17:5433049:A:T | L272H | 0.998 |
| 17:5433088:A:G | L259P | 0.998 |
| 17:5433136:A:C | L243R | 0.998 |
| 17:5433315:A:G | L226P | 0.998 |
| 17:5433381:A:G | F204S | 0.998 |
| 17:5433688:C:T | C186Y | 0.998 |
| 17:5433741:G:C | F168L | 0.998 |
| 17:5433741:G:T | F168L | 0.998 |
| 17:5433743:A:G | F168L | 0.998 |
| 17:5434936:G:C | S138R | 0.998 |
| 17:5434936:G:T | S138R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000204882 (17:5434462 CTCTTTTT>C), RS1000298676 (17:5440261 AC>A), RS1000518841 (17:5438740 G>A), RS1000586864 (17:5439973 T>A), RS1000973072 (17:5439237 G>A,C), RS1001011744 (17:5439457 G>A), RS1001036395 (17:5439015 C>G,T), RS1001095419 (17:5434855 A>G), RS1001526754 (17:5434712 C>A,T), RS1001566493 (17:5436103 C>A), RS1002140919 (17:5435896 A>T), RS1002570952 (17:5437078 A>G), RS1003634208 (17:5432943 C>T), RS1003950638 (17:5432749 G>A,C,T), RS1004150862 (17:5437887 C>T)
Disease associations
OMIM: gene MIM:601269 | disease phenotypes: MIM:617713
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| combined oxidative phosphorylation deficiency 33 | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Definitive | AR |
Mondo (2): mitochondrial disease (MONDO:0044970), combined oxidative phosphorylation deficiency 33 (MONDO:0054677)
Orphanet (1): Mitochondrial disease (Orphanet:68380)
HPO phenotypes
31 total (30 of 31 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000100 | Nephrotic syndrome |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000483 | Astigmatism |
| HP:0000508 | Ptosis |
| HP:0000590 | Progressive external ophthalmoplegia |
| HP:0000646 | Amblyopia |
| HP:0000821 | Hypothyroidism |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001562 | Oligohydramnios |
| HP:0001638 | Cardiomyopathy |
| HP:0001640 | Cardiomegaly |
| HP:0001695 | Cardiac arrest |
| HP:0001712 | Left ventricular hypertrophy |
| HP:0002151 | Increased circulating lactate concentration |
| HP:0002181 | Cerebral edema |
| HP:0002240 | Hepatomegaly |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003128 | Lactic acidosis |
| HP:0003198 | Myopathy |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003546 | Exercise intolerance |
| HP:0003577 | Congenital onset |
| HP:0003584 | Late onset |
| HP:0003621 | Juvenile onset |
| HP:0003623 | Neonatal onset |
| HP:0008347 | Decreased activity of mitochondrial complex IV |
| HP:0010851 | EEG with burst suppression |
| HP:0011923 | Decreased activity of mitochondrial complex I |
| HP:0011924 | Decreased activity of mitochondrial complex III |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002318_14 | Rheumatoid arthritis | 2.000000e-09 |
| GCST006959_103 | Rheumatoid arthritis | 7.000000e-08 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066363 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.46 | Kd | 34.81 | nM | CHEMBL3752910 |
| 7.46 | ED50 | 34.81 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149835: Binding affinity to human C1QBP incubated for 45 mins by Kinobead based pull down assay | kd | 0.0348 | uM |
CTD chemical–gene interactions
68 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 4 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Dactinomycin | decreases response to substance, affects cotreatment, increases secretion | 2 |
| Tretinoin | decreases expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| FR900359 | increases phosphorylation | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | affects expression | 1 |
| methylselenic acid | decreases expression | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctanoic acid | affects cotreatment, decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| butylidenephthalide | increases expression | 1 |
| cupric oxide | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| microcystin RR | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chloropicrin | decreases expression | 1 |
| corosolic acid | decreases expression | 1 |
| K 7174 | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | affects expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652877 | Binding | Binding affinity to human C1QBP incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
8 cell lines: 5 cancer cell line, 2 induced pluripotent stem cell, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1VG | Abcam A-549 C1QBP KO | Cancer cell line | Male |
| CVCL_D2A2 | Abcam HCT 116 C1QBP KO | Cancer cell line | Male |
| CVCL_D9AF | Ubigene HEK293 C1QBP KO | Transformed cell line | Female |
| CVCL_D9YX | Ubigene HeLa C1QBP KO | Cancer cell line | Female |
| CVCL_E1SV | HAP1 C1QBP (-) 2 | Cancer cell line | Male |
| CVCL_SG27 | HAP1 C1QBP (-) 1 | Cancer cell line | Male |
| CVCL_ZB26 | XACHi010-A | Induced pluripotent stem cell | Male |
| CVCL_ZB27 | XACHi011-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
103 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT00432744 | PHASE3 | COMPLETED | Phase III Trial of Coenzyme Q10 in Mitochondrial Disease |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT06451757 | PHASE3 | RECRUITING | KHENERFIN Study: A Trial to Evaluate the Efficacy and Safety of Sonlicromanol in Primary Mitochondrial Diseases |
| NCT02398201 | PHASE2 | COMPLETED | A Study of Bezafibrate in Mitochondrial Myopathy |
| NCT02473445 | PHASE2 | TERMINATED | A Long-term Extension of Study RP103-MITO-001 (NCT02023866) to Assess Cysteamine Bitartrate Delayed-release Capsules (RP103) in Children With Inherited Mitochondrial Disease |
| NCT02500628 | PHASE2 | COMPLETED | Heart Rate Variability in Response to Metformin Challenge |
| NCT02805790 | PHASE2 | COMPLETED | Safety, Tolerability, Efficacy of MTP-131 for Treatment of Mitochondrial Disease in Subjects From the MMPOWER Study |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT02976038 | PHASE2 | TERMINATED | Open-Label Extension Trial to Characterize the Long-term Safety and Tolerability of Elamipretide in Subjects With Genetically Confirmed Primary Mitochondrial Myopathy (PMM) |
| NCT03177798 | PHASE2 | COMPLETED | Mitochondria and Chronic Kidney Disease |
| NCT03866954 | PHASE2 | WITHDRAWN | Trial of Erythrocyte Encapsulated Thymidine Phosphorylase In Mitochondrial Neurogastrointestinal Encephalomyopathy |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04604548 | PHASE2 | COMPLETED | The KHENEREXT Study |
| NCT04802707 | PHASE2 | RECRUITING | Deoxynucleosides Pyrimidines as Treatment for Mitochondrial Depletion Syndrome |
| NCT04846036 | PHASE2 | SUSPENDED | The KHENERGYC Study |
| NCT05650229 | PHASE2 | RECRUITING | Efficacy of KL1333 in Adult Patients With Primary Mitochondrial Disease |
| NCT05972954 | PHASE2 | COMPLETED | OMT-28 in Patients With Primary Mitochondrial Disease (PMD) (PMD-OPTION) |
| NCT06017869 | PHASE2 | RECRUITING | Evaluate the Safety and Therapeutic Effects of a Single Intravenous Infusion (IV) of Autologous CD34+ Cells Enriched With Allogenic Placenta-derived Mitochondria in Patients With a Diagnosis of Pearson Syndrome (PS) |
| NCT07514338 | PHASE2 | NOT_YET_RECRUITING | Open Label Extension to Assess Long Term Safety and Efficacy of KL1333 in Patients With Primary Mitochondrial Disease |
| NCT00060515 | PHASE1 | TERMINATED | RG2133 (2’,3’,5’-Tri-O-Acetyluridine) in Mitochondrial Disease |
| NCT02348125 | PHASE1 | UNKNOWN | Does Clinical Treatment of Mitochondrial Dysfunction Impact Autism Spectrum Disorder (ASD)? |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT03888716 | PHASE1 | COMPLETED | A Phase Ia/Ib, SAD and MAD Study of of KL1333 in Healthy Subjects and Patients With Primary Mitochondrial Disease |
| NCT04086329 | PHASE1 | RECRUITING | Validation of Oxygen Nanosensor in Mitochondrial Myopathy |
| NCT04643249 | PHASE1 | COMPLETED | Drug-drug Interaction Study of KL1333 in Healthy Subjects |
| NCT05241262 | PHASE1 | RECRUITING | Study of N-acetylcysteine in the Treatment of Patients With the m.3243A>G Mutation and Low Brain Glutathione Levels |
| NCT05569122 | PHASE1 | RECRUITING | Applying pGz in Mitochondrial Disease |
| NCT06819683 | PHASE1 | RECRUITING | Validation of Nanosensor Oxygen Measurement |
| NCT07258667 | PHASE1 | NOT_YET_RECRUITING | Pilot Study of the Efficacy of Nicotinamide (Vitamin B3) in Leber’s Hereditary Optic Neuropathy |
| NCT04378075 | PHASE2/PHASE3 | TERMINATED | A Study to Evaluate Efficacy and Safety of Vatiquinone for Treating Mitochondrial Disease in Participants With Refractory Epilepsy |
| NCT01642056 | PHASE1/PHASE2 | COMPLETED | EPI-743 for Metabolism or Mitochondrial Disorders |
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Related Atlas pages
- Associated diseases: combined oxidative phosphorylation deficiency 33, mitochondrial disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): combined oxidative phosphorylation deficiency 33, mitochondrial disease, rheumatoid arthritis