C1QTNF3-DT

Summary

C1QTNF3-DT (C1QTNF3 divergent transcript, HGNC:59025) is a long non-coding RNA gene on chromosome 5p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59025
Approved symbol	C1QTNF3-DT
Name	C1QTNF3 divergent transcript
Location	5p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000286543
Ensembl biotype	lncRNA
Entrez	144667555

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000658746, ENST00000736918, ENST00000736919, ENST00000736920, ENST00000736921, ENST00000736922

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000658746 — 3 exons

Exon	Start	End
ENSE00003869045	34286010	34286189
ENSE00003877900	34286296	34288755
ENSE00003886305	34245273	34245407

Expression profiles

Bgee: expression breadth broad, 59 present calls, max score 72.44.

Top tissues by expression

59 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.44	silver quality
ventricular zone	UBERON:0003053	59.40	gold quality
ganglionic eminence	UBERON:0004023	57.72	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.98	silver quality
hindlimb stylopod muscle	UBERON:0004252	53.53	silver quality
urinary bladder	UBERON:0001255	52.26	silver quality
blood	UBERON:0000178	52.05	silver quality
endometrium	UBERON:0001295	51.94	gold quality
monocyte	CL:0000576	50.57	silver quality
corpus callosum	UBERON:0002336	49.47	silver quality
prefrontal cortex	UBERON:0000451	49.31	silver quality
islet of Langerhans	UBERON:0000006	48.64	gold quality
primary visual cortex	UBERON:0002436	48.29	silver quality
cerebellar cortex	UBERON:0002129	47.37	silver quality
cerebellar hemisphere	UBERON:0002245	47.19	silver quality
superior frontal gyrus	UBERON:0002661	46.21	silver quality
muscle of leg	UBERON:0001383	46.04	silver quality
gastrocnemius	UBERON:0001388	45.62	silver quality
saliva-secreting gland	UBERON:0001044	45.11	silver quality
amygdala	UBERON:0001876	45.08	gold quality
ovary	UBERON:0000992	44.54	silver quality
Ammon’s horn	UBERON:0001954	43.77	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.74	gold quality
frontal cortex	UBERON:0001870	43.51	silver quality
tonsil	UBERON:0002372	43.33	silver quality
cerebral cortex	UBERON:0000956	43.22	silver quality
heart	UBERON:0000948	43.17	silver quality
putamen	UBERON:0001874	43.10	silver quality
tibial artery	UBERON:0007610	43.07	silver quality
brain	UBERON:0000955	42.99	silver quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.