C1QTNF9-AS1

Summary

C1QTNF9-AS1 (C1QTNF9 antisense RNA 1, HGNC:39906) is a long non-coding RNA gene on chromosome 13q12.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39906
Approved symbol	C1QTNF9-AS1
Name	C1QTNF9 antisense RNA 1
Location	13q12.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240868
Ensembl biotype	lncRNA
Entrez	100874232
RNAcentral	URS00003E5637 — lncRNA, 470 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000449656

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000449656 — 2 exons

Exon	Start	End
ENSE00001674619	24315725	24316121
ENSE00001758514	24321526	24321598

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 72.01.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	72.01	gold quality
skeletal muscle tissue	UBERON:0001134	65.88	gold quality
duodenum	UBERON:0002114	57.39	gold quality
muscle of leg	UBERON:0001383	56.31	gold quality
prefrontal cortex	UBERON:0000451	55.46	gold quality
monocyte	CL:0000576	54.33	gold quality
gastrocnemius	UBERON:0001388	54.11	gold quality
blood	UBERON:0000178	53.90	gold quality
gall bladder	UBERON:0002110	53.87	gold quality
liver	UBERON:0002107	53.55	gold quality
islet of Langerhans	UBERON:0000006	53.36	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.27	gold quality
body of pancreas	UBERON:0001150	53.12	gold quality
placenta	UBERON:0001987	52.86	gold quality
right lobe of liver	UBERON:0001114	52.75	gold quality
heart left ventricle	UBERON:0002084	51.45	gold quality
heart	UBERON:0000948	51.33	gold quality
endometrium	UBERON:0001295	50.88	gold quality
lymph node	UBERON:0000029	49.81	gold quality
adult mammalian kidney	UBERON:0000082	49.42	gold quality
body of uterus	UBERON:0009853	48.46	gold quality
thoracic mammary gland	UBERON:0005200	48.30	gold quality
tibial nerve	UBERON:0001323	48.08	gold quality
tibial artery	UBERON:0007610	47.94	gold quality
stomach	UBERON:0000945	47.75	gold quality
body of stomach	UBERON:0001161	47.74	gold quality
lower esophagus muscularis layer	UBERON:0035833	47.52	gold quality
lower esophagus	UBERON:0013473	47.49	gold quality
substantia nigra	UBERON:0002038	47.24	gold quality
esophagus	UBERON:0001043	47.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.