C1orf21-DT

Summary

C1orf21-DT (C1orf21 divergent transcript, HGNC:55249) is a long non-coding RNA gene on chromosome 1q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55249
Approved symbol	C1orf21-DT
Name	C1orf21 divergent transcript
Location	1q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271387
Ensembl biotype	lncRNA
Entrez	118827814
RNAcentral	URS0000433648 — lncRNA, 952 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000605589, ENST00000810533, ENST00000810534, ENST00000810535

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000605589 — 1 exons

Exon	Start	End
ENSE00003659662	184385753	184386704

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 67.08.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	67.08	silver quality
ventricular zone	UBERON:0003053	62.66	gold quality
mucosa of stomach	UBERON:0001199	62.22	gold quality
ectocervix	UBERON:0012249	62.17	gold quality
left ovary	UBERON:0002119	61.85	gold quality
adenohypophysis	UBERON:0002196	61.79	gold quality
cortical plate	UBERON:0005343	61.59	gold quality
pituitary gland	UBERON:0000007	61.46	gold quality
ovary	UBERON:0000992	61.20	gold quality
right ovary	UBERON:0002118	60.57	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.54	gold quality
ganglionic eminence	UBERON:0004023	60.33	gold quality
apex of heart	UBERON:0002098	60.21	gold quality
gastrocnemius	UBERON:0001388	60.15	gold quality
mucosa of transverse colon	UBERON:0004991	60.15	gold quality
muscle of leg	UBERON:0001383	59.91	gold quality
prostate gland	UBERON:0002367	59.21	gold quality
urinary bladder	UBERON:0001255	59.07	gold quality
tibial nerve	UBERON:0001323	58.93	gold quality
right hemisphere of cerebellum	UBERON:0014890	58.90	gold quality
body of uterus	UBERON:0009853	58.88	gold quality
thoracic mammary gland	UBERON:0005200	58.66	gold quality
cerebellar hemisphere	UBERON:0002245	58.64	gold quality
cerebellum	UBERON:0002037	58.63	gold quality
cerebellar cortex	UBERON:0002129	58.63	gold quality
myometrium	UBERON:0001296	58.60	gold quality
right adrenal gland cortex	UBERON:0035827	58.30	gold quality
skeletal muscle tissue	UBERON:0001134	58.19	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	58.17	gold quality
right adrenal gland	UBERON:0001233	58.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.