C22orf39
geneOn this page
Also known as MGC74441Pants
Summary
C22orf39 (chromosome 22 open reading frame 39, HGNC:27012) is a protein-coding gene on chromosome 22q11.21, encoding Synaptic plasticity regulator PANTS (Q6P5X5). Negatively regulates long-term potentiation and modulates adult synaptic plasticity.
Predicted to be involved in negative regulation of long-term synaptic potentiation. Located in mitochondrion.
Source: NCBI Gene 128977 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 15 total — 6 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_173793
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:27012 |
| Approved symbol | C22orf39 |
| Name | chromosome 22 open reading frame 39 |
| Location | 22q11.21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC74441, Pants |
| Ensembl gene | ENSG00000242259 |
| Ensembl biotype | protein_coding |
| Entrez | 128977 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 3 protein_coding, 1 nonsense_mediated_decay
ENST00000399562, ENST00000399568, ENST00000509549, ENST00000856305
RefSeq mRNA: 2 — MANE Select: NM_173793
NM_001166242, NM_173793
CCDS: CCDS33599, CCDS54498
Canonical transcript exons
ENST00000399562 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001494520 | 19440886 | 19444390 |
| ENSE00003531772 | 19447378 | 19447545 |
| ENSE00003708298 | 19447665 | 19447711 |
Expression profiles
Bgee: expression breadth ubiquitous, 250 present calls, max score 95.34.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1218 / max 2.8766, expressed in 47 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 193151 | 30.9424 | 1821 |
| 193152 | 0.1218 | 47 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gastrocnemius | UBERON:0001388 | 95.34 | gold quality |
| muscle of leg | UBERON:0001383 | 94.87 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 94.66 | gold quality |
| tibialis anterior | UBERON:0001385 | 92.59 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 92.24 | gold quality |
| deltoid | UBERON:0001476 | 92.21 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.02 | gold quality |
| quadriceps femoris | UBERON:0001377 | 91.93 | gold quality |
| vastus lateralis | UBERON:0001379 | 91.79 | gold quality |
| amygdala | UBERON:0001876 | 91.79 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.72 | gold quality |
| muscle tissue | UBERON:0002385 | 91.65 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.61 | gold quality |
| lower esophagus | UBERON:0013473 | 91.58 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 91.58 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 91.12 | gold quality |
| heart left ventricle | UBERON:0002084 | 91.11 | gold quality |
| endothelial cell | CL:0000115 | 91.06 | gold quality |
| biceps brachii | UBERON:0001507 | 91.04 | gold quality |
| cardiac ventricle | UBERON:0002082 | 90.86 | gold quality |
| ventricular zone | UBERON:0003053 | 90.79 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 90.79 | silver quality |
| cardiac muscle of right atrium | UBERON:0003379 | 90.71 | silver quality |
| right frontal lobe | UBERON:0002810 | 90.69 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 90.63 | gold quality |
| tibial artery | UBERON:0007610 | 90.50 | gold quality |
| popliteal artery | UBERON:0002250 | 90.49 | gold quality |
| myocardium | UBERON:0002349 | 90.49 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 90.44 | gold quality |
| spinal cord | UBERON:0002240 | 90.31 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.87 |
| E-MTAB-7606 | no | 604.79 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
41 targeting C22orf39, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-1208 | 99.70 | 68.28 | 1533 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-3123 | 99.47 | 67.15 | 2693 |
| HSA-MIR-877-3P | 99.09 | 68.10 | 1637 |
| HSA-MIR-6814-5P | 99.03 | 66.68 | 1273 |
| HSA-MIR-491-3P | 98.88 | 68.86 | 1224 |
| HSA-MIR-26B-3P | 98.71 | 67.49 | 1102 |
| HSA-MIR-6827-5P | 98.46 | 64.88 | 1256 |
| HSA-MIR-6776-3P | 98.38 | 66.34 | 655 |
| HSA-MIR-5088-3P | 98.29 | 66.63 | 1310 |
| HSA-MIR-6882-3P | 98.23 | 67.01 | 1119 |
| HSA-MIR-891A-3P | 98.05 | 67.99 | 970 |
| HSA-MIR-1245B-3P | 98.01 | 68.91 | 1387 |
| HSA-MIR-876-5P | 97.99 | 68.49 | 1345 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:ch211-51h9.6 | ENSDARG00000092360 |
| mus_musculus | 2510002D24Rik | ENSMUSG00000071632 |
| drosophila_melanogaster | CG15908 | FBGN0033085 |
Protein
Protein identifiers
Synaptic plasticity regulator PANTS — Q6P5X5 (reviewed: Q6P5X5)
Alternative names: Plasticity-associated neural transcript short
All UniProt accessions (2): E0CX16, Q6P5X5
UniProt curated annotations — full annotation on UniProt →
Function. Negatively regulates long-term potentiation and modulates adult synaptic plasticity. Stabilizes the interaction of RTN4 isoform A/Nogo-A with its receptors, inhibiting clustering of postsynaptic AMPA receptors at synaptic sites. Upon neuronal stimulation, degraded at synapses, reducing RTN4 signaling and allowing AMPA receptor clustering at individual synapses.
Subunit / interactions. Interacts with RTN4 isoform A/Nogo-A; the interaction results in enhanced RTN4-mediated inhibition of AMPA receptor clustering. Also interacts with NCAM1, RANBP2 and CCT8.
Subcellular location. Synapse. Synaptic cleft.
Post-translational modifications. Rapidly degraded by proteolysis following neuronal stimulation, resulting in increased AMPA receptor clustering.
Similarity. Belongs to the UPF0545 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6P5X5-1 | 1 | yes |
| Q6P5X5-2 | 2 |
RefSeq proteins (2): NP_001159714, NP_776154* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR021475 | Pants/Emi1-like | Family |
Pfam: PF11326
UniProt features (2 total): chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6P5X5-F1 | 89.97 | 0.75 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 85 (showing top):
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_CELL_CELL_SIGNALING, GOBP_REGULATION_OF_SYNAPTIC_PLASTICITY, MARTINEZ_RB1_TARGETS_DN, GOBP_SYNAPTIC_SIGNALING, GOBP_LONG_TERM_SYNAPTIC_POTENTIATION, GOBP_REGULATION_OF_LONG_TERM_SYNAPTIC_POTENTIATION, GOBP_POSITIVE_REGULATION_OF_SYNAPTIC_TRANSMISSION, GOCC_SYNAPSE, STARK_HYPPOCAMPUS_22Q11_DELETION_DN, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN, BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_D, GOBP_REGULATION_OF_TRANS_SYNAPTIC_SIGNALING, GOBP_NEGATIVE_REGULATION_OF_LONG_TERM_SYNAPTIC_POTENTIATION, GOCC_SYNAPTIC_CLEFT
GO Biological Process (2): regulation of synaptic plasticity (GO:0048167), negative regulation of long-term synaptic potentiation (GO:1900272)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (4): mitochondrion (GO:0005739), synaptic cleft (GO:0043083), synapse (GO:0045202), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| modulation of chemical synaptic transmission | 1 |
| regulation of biological quality | 1 |
| negative regulation of biological process | 1 |
| long-term synaptic potentiation | 1 |
| regulation of long-term synaptic potentiation | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| extracellular region | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
466 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C22orf39 | GNB1L | Q9BYB4 | 586 |
| C22orf39 | ATP23 | Q9Y6H3 | 570 |
| C22orf39 | L3MBTL4 | Q8NA19 | 490 |
| C22orf39 | TRMT2A | Q8IZ69 | 480 |
| C22orf39 | DGCR6L | Q9BY27 | 478 |
| C22orf39 | PIGBOS1 | A0A0B4J2F0 | 466 |
| C22orf39 | RHNO1 | Q9BSD3 | 466 |
| C22orf39 | RWDD2A | Q9UIY3 | 463 |
| C22orf39 | GPM6A | P51674 | 461 |
| C22orf39 | MEAK7 | Q6P9B6 | 433 |
| C22orf39 | SEPTIN5 | Q99719 | 433 |
| C22orf39 | LYRM9 | A8MSI8 | 428 |
| C22orf39 | ZNF74 | Q16587 | 419 |
| C22orf39 | MBLAC2 | Q68D91 | 418 |
| C22orf39 | TANGO2 | Q6ICL3 | 418 |
IntAct
162 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| C22orf39 | CEP76 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CEP76 | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.720 |
| C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| C22orf39 | BANP | psi-mi:“MI:0915”(physical association) | 0.560 |
| RBPMS | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | MDFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| BANP | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | RBPMS | psi-mi:“MI:0915”(physical association) | 0.560 |
| MDFI | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | TNS2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | KRTAP5-6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | ARSA | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-9 | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C22orf39 | ZNF620 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CABP2 | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TNS2 | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP5-6 | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ARSA | C22orf39 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (51): C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), KRTAP10-3 (Two-hybrid), C22orf39 (Two-hybrid), CEP76 (Two-hybrid), C22orf39 (Affinity Capture-RNA), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid), C22orf39 (Two-hybrid)
ESM2 similar proteins: A0A0U1RR11, A0A0U1RRI6, A0A8I5KY20, A1L515, B7Z1M9, F1SAM7, O18734, O88995, P0CG25, P0DPI3, P22083, P34131, Q0IIA6, Q0X0E2, Q2M3D2, Q2MJR0, Q2TA57, Q2TAM9, Q3B7L1, Q3SZ70, Q3U595, Q5RE30, Q5SZI1, Q5TM19, Q5U4P2, Q659K9, Q673H1, Q6P5X5, Q6P6N5, Q7Z736, Q80VU4, Q861W0, Q86UD0, Q8C0R7, Q8CG70, Q8IUW3, Q8IVL6, Q8QZV0, Q8R2H1, Q8VCE9
Diamond homologs: A2BD89, Q0P3X7, Q3SZ70, Q3U595, Q5RE30, Q6P5X5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 50 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Keratinization | 7 | 11.5× | 4e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
15 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 1 |
| Uncertain significance | 2 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (7)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1684555 | GRCh37/hg19 22q11.21(chr22:18884514-21484289)x1 | Pathogenic |
| 1703641 | GRCh37/hg19 22q11.21(chr22:18916842-21798907) | Pathogenic |
| 1707626 | GRCh37/hg19 22q11.21(chr22:18644702-21467607)x1 | Pathogenic |
| 1708200 | GRCh37/hg19 22q11.21(chr22:18644542-21465659)x1 | Pathogenic |
| 1711557 | GRCh37/hg19 22q11.21(chr22:18893888-21414817)x3 | Pathogenic |
| 523273 | GRCh37/hg19 22q11.21(chr22:18894835-20311763) | Pathogenic |
| 4279113 | GRCh37/hg19 22q11.21(chr22:19154608-19938011)x1 | Likely pathogenic |
SpliceAI
5286 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:19351445:CC:C | acceptor_gain | 1.0000 |
| 22:19351446:CC:C | acceptor_gain | 1.0000 |
| 22:19351447:C:T | acceptor_gain | 1.0000 |
| 22:19353352:TCAC:T | donor_loss | 1.0000 |
| 22:19353353:CACCT:C | donor_loss | 1.0000 |
| 22:19353354:A:C | donor_loss | 1.0000 |
| 22:19353355:C:T | donor_loss | 1.0000 |
| 22:19353355:CCTT:C | donor_gain | 1.0000 |
| 22:19353515:CCGAG:C | acceptor_gain | 1.0000 |
| 22:19353516:CGAG:C | acceptor_gain | 1.0000 |
| 22:19353516:CGAGC:C | acceptor_gain | 1.0000 |
| 22:19353517:GAG:G | acceptor_gain | 1.0000 |
| 22:19353520:C:CC | acceptor_gain | 1.0000 |
| 22:19353530:C:CT | acceptor_gain | 1.0000 |
| 22:19355862:CTTC:C | acceptor_gain | 1.0000 |
| 22:19359331:CTTA:C | donor_loss | 1.0000 |
| 22:19359332:TTAC:T | donor_loss | 1.0000 |
| 22:19359334:A:C | donor_loss | 1.0000 |
| 22:19359335:CCAG:C | donor_gain | 1.0000 |
| 22:19359389:C:A | donor_gain | 1.0000 |
| 22:19361342:C:CC | acceptor_gain | 1.0000 |
| 22:19361932:C:CA | acceptor_loss | 1.0000 |
| 22:19375626:CCTA:C | donor_loss | 1.0000 |
| 22:19375628:TA:T | donor_loss | 1.0000 |
| 22:19375789:CATA:C | acceptor_gain | 1.0000 |
| 22:19375793:C:CC | acceptor_gain | 1.0000 |
| 22:19385516:CTCAC:C | donor_loss | 1.0000 |
| 22:19385517:TCA:T | donor_loss | 1.0000 |
| 22:19385518:CA:C | donor_loss | 1.0000 |
| 22:19385519:A:AG | donor_loss | 1.0000 |
AlphaMissense
917 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:19447435:C:A | W82C | 0.974 |
| 22:19447435:C:G | W82C | 0.974 |
| 22:19444298:C:A | W132C | 0.963 |
| 22:19444298:C:G | W132C | 0.963 |
| 22:19447405:C:A | W92C | 0.963 |
| 22:19447405:C:G | W92C | 0.963 |
| 22:19444328:C:A | W122C | 0.959 |
| 22:19444328:C:G | W122C | 0.959 |
| 22:19447510:C:A | W57C | 0.940 |
| 22:19447510:C:G | W57C | 0.940 |
| 22:19444330:A:G | W122R | 0.930 |
| 22:19444330:A:T | W122R | 0.930 |
| 22:19447460:C:A | G74V | 0.929 |
| 22:19447437:A:G | W82R | 0.927 |
| 22:19447437:A:T | W82R | 0.927 |
| 22:19444300:A:G | W132R | 0.925 |
| 22:19444300:A:T | W132R | 0.925 |
| 22:19444320:C:A | R125M | 0.920 |
| 22:19447415:C:G | C89S | 0.915 |
| 22:19447416:A:T | C89S | 0.915 |
| 22:19447415:C:T | C89Y | 0.913 |
| 22:19444319:C:A | R125S | 0.912 |
| 22:19444319:C:G | R125S | 0.912 |
| 22:19447502:C:G | C60S | 0.912 |
| 22:19447503:A:T | C60S | 0.912 |
| 22:19447426:G:C | D85E | 0.910 |
| 22:19447426:G:T | D85E | 0.910 |
| 22:19447427:T:C | D85G | 0.910 |
| 22:19447524:A:G | Y53H | 0.908 |
| 22:19447427:T:A | D85V | 0.907 |
dbSNP variants (sampled 300 via entrez): RS1000975672 (22:19447109 C>G), RS1001204812 (22:19446706 CTT>C,CT,CTTT), RS1001476759 (22:19447266 T>C,G), RS1001502549 (22:19440796 A>G,T), RS1001843126 (22:19448726 A>G), RS1001992173 (22:19442542 G>C), RS1002213818 (22:19447599 G>A,T), RS1002428219 (22:19442945 A>G), RS1002512076 (22:19446338 C>T), RS1002539807 (22:19442266 G>A), RS1003236558 (22:19448753 G>T), RS1003288750 (22:19449118 C>A,T), RS1003826650 (22:19446004 T>A,C), RS1004467157 (22:19446364 A>C), RS1004902426 (22:19446620 T>C,G)
Disease associations
OMIM: gene `` | disease phenotypes: MIM:188400, MIM:167500, MIM:603047
GenCC curated gene-disease
Mondo (3): DiGeorge syndrome (MONDO:0008564), congenital velopharyngeal incompetence (MONDO:0008180), astigmatism (MONDO:0011284)
Orphanet (3): 22q11.2 deletion syndrome (Orphanet:567), Syndromic anorectal malformation (Orphanet:117573), Congenital velopharyngeal incompetence (Orphanet:2291)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000483 | Astigmatism |
GWAS associations
0 associations (top):
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001251 | Astigmatism | C11.744.212 |
| D004062 | DiGeorge Syndrome | C05.660.207.103.500; C14.240.400.021.500; C14.280.400.044.500; C15.604.451.249.500; C16.131.077.019.500; C16.131.240.400.021.500; C16.131.260.019.500; C16.131.482.249.500; C16.131.621.207.103.500; C16.320.180.019.500; C19.642.482.500.500 |
| D014681 | Velopharyngeal Insufficiency | C07.465.525.955; C07.550.966; C07.650.525.955; C09.775.955; C16.131.850.525.955 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 7 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Catechin | affects cotreatment, increases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Thiram | decreases expression | 1 |
| 1-Methyl-3-isobutylxanthine | increases expression, affects cotreatment | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Acrylamide | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C0QN | HEK Flp-In T-REx-293-C22orf39-KO | Transformed cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00770094 | PHASE4 | UNKNOWN | Multi Laser Platform Comparison Study for LASIK |
| NCT00821236 | PHASE4 | COMPLETED | Contralateral Comparison of Three Excimer Laser Systems in Performing LASIK |
| NCT00825513 | PHASE4 | COMPLETED | Safety and Effectiveness of the Akreos Toric Intraocular Lens. |
| NCT01018797 | PHASE4 | COMPLETED | Intrastromal Corneal Ring for High Astigmatism on Postkeratoplasty |
| NCT01279031 | PHASE4 | COMPLETED | Randomized Comparison of the Abbott WHITESTAR Signature System With Ellips Tranversal Ultrasound vs. the Alcon Infiniti With the Ozil Torsional Handpiece in Phacoemulsification: A Contralaterally-Controlled Trial |
| NCT01396616 | PHASE4 | UNKNOWN | Clinical Evaluation of Toric Intraocular Lens Made by Aurolab |
| NCT01454843 | PHASE4 | COMPLETED | LASIK Using the Alcon Allegretto Wavefront-Guided Excimer Laser vs AMO Visx Wavefront-Guided Excimer Laser |
| NCT01554761 | PHASE4 | UNKNOWN | Effect of Posterior Corneal Toricity on Refractive Outcome of Pseudophakia |
| NCT01885780 | PHASE4 | COMPLETED | Prospective Evaluation of the Effectiveness of the Femtosecond Laser-assisted Refractive Astigmatic Keratotomy. |
| NCT04208750 | PHASE4 | COMPLETED | Clinical Investigation of the Vision-R800 Device. |
| NCT04283331 | PHASE4 | UNKNOWN | Anesthetic Impregnated Bandage Soft Contact Lens (BSCL) in Pain Management After Photorefractive Keratectomy (PRK) |
| NCT04321226 | PHASE4 | UNKNOWN | Femtosecond Laser-assisted Astigmatism Treatment |
| NCT04418986 | PHASE4 | COMPLETED | Incisional Correction of Corneal Astigmatism During Phacoemulsification |
| NCT07140653 | PHASE4 | RECRUITING | Arcuate Incisions With Light Adjustable Lens for Astigmatism Correction in Lens Surgery |
| NCT00395538 | PHASE3 | TERMINATED | Effects of PTH Replacement on Bone in Hypoparathyroidism |
| NCT00000123 | PHASE3 | COMPLETED | The Berkeley Orthokeratology Study |
| NCT00663923 | PHASE3 | COMPLETED | Comparison of Cross-cylinder and Conventional Photorefractive Keratectomy(PRK) in Correcting Medium-high Astigmatism |
| NCT00928122 | PHASE3 | UNKNOWN | Intrastromal Correction of Ametropia by a Femtosecond Laser |
| NCT01673503 | PHASE3 | COMPLETED | A Prospective Study of Femtosecond Laser Intracorneal Lensectomi |
| NCT05247658 | PHASE3 | TERMINATED | Use of a Disk of Amniotic Membrane (Visio-AMTRIX) in Postoperative Care After PKR |
| NCT00576407 | PHASE2 | COMPLETED | Thymus Transplantation in DiGeorge Syndrome #668 |
| NCT00576836 | PHASE2 | COMPLETED | Thymus Transplantation Dose in DiGeorge #932 |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT05149898 | PHASE2 | COMPLETED | Open-Label Study of ZYN002 Administered as a Transdermal Gel to Children and Adolescents With 22q11.2 Deletion Syndrome (INSPIRE) |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT00566488 | PHASE1 | COMPLETED | Parathyroid and Thymus Transplantation in DiGeorge #931 |
| NCT00579709 | PHASE1 | COMPLETED | Thymus Transplantation With Immunosuppression |
| NCT00849888 | PHASE1 | TERMINATED | Serum-Free Thymus Transplantation in DiGeorge Anomaly |
| NCT02895906 | PHASE1 | COMPLETED | Safety and Efficacy Study of NFC-1 in Subjects Aged 12-17 Years With 22q11.2DS & Associated Neuropsychiatric Conditions |
| NCT06896357 | PHASE1 | NOT_YET_RECRUITING | Effectiveness and Safety of Limbal Relaxing Incisions for Correcting Post Phacoemulsification High Astigmatism |
| NCT00579527 | PHASE1/PHASE2 | COMPLETED | Phase I/II Thymus Transplantation With Immunosuppression #950 |
| NCT00004351 | Not specified | COMPLETED | Study of Phenotype and Genotype Correlations in Patients With Contiguous Gene Deletion Syndromes |
| NCT00005102 | Not specified | UNKNOWN | Immunologic Evaluation in Patients With DiGeorge Syndrome or Velocardiofacial Syndrome |
| NCT00105274 | Not specified | COMPLETED | Velocardiofacial (VCFS; 22q11.2; DiGeorge) Syndrome Study |
| NCT00278005 | Not specified | TERMINATED | Infection in DiGeorge Following CHD Surgery |
| NCT00556530 | Not specified | RECRUITING | Examining Genetic Factors That Affect the Severity of 22q11.2 Deletion Syndrome |
| NCT00916955 | Not specified | COMPLETED | Genetic Modifiers for 22q11.2 Syndrome |
| NCT01220531 | Not specified | COMPLETED | Thymus Transplantation Safety-Efficacy |
| NCT01781923 | Not specified | COMPLETED | Cognitive Remediation in 22q11DS |
| NCT02381457 | Not specified | COMPLETED | SNP-based Microdeletion and Aneuploidy RegisTry (SMART) |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): astigmatism, congenital velopharyngeal incompetence, DiGeorge syndrome