C2CD5-AS1

Summary

C2CD5-AS1 (C2CD5 antisense RNA 1, HGNC:55961) is a long non-coding RNA gene on chromosome 12p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55961
Approved symbol	C2CD5-AS1
Name	C2CD5 antisense RNA 1
Location	12p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250166
Ensembl biotype	lncRNA
Entrez	105369692
RNAcentral	URS0000EEEFB4 — lncRNA, 990 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000508615, ENST00000658064, ENST00000661495, ENST00000670175, ENST00000689593, ENST00000775355, ENST00000775356, ENST00000775357, ENST00000775358

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508615 — 4 exons

Exon	Start	End
ENSE00003877630	22585606	22585667
ENSE00003888482	22591194	22591314
ENSE00004142116	22618485	22618868
ENSE00004142122	22409256	22409407

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 74.26.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
amygdala	UBERON:0001876	74.26	gold quality
temporal lobe	UBERON:0001871	74.23	gold quality
substantia nigra	UBERON:0002038	69.67	gold quality
Ammon’s horn	UBERON:0001954	68.67	gold quality
ventricular zone	UBERON:0003053	68.09	gold quality
skeletal muscle tissue	UBERON:0001134	67.66	silver quality
anterior cingulate cortex	UBERON:0009835	67.49	gold quality
ganglionic eminence	UBERON:0004023	67.43	gold quality
nucleus accumbens	UBERON:0001882	67.07	gold quality
cerebral cortex	UBERON:0000956	66.36	gold quality
caudate nucleus	UBERON:0001873	66.23	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	66.09	gold quality
right frontal lobe	UBERON:0002810	65.93	gold quality
frontal cortex	UBERON:0001870	65.34	gold quality
superior frontal gyrus	UBERON:0002661	65.10	gold quality
primary visual cortex	UBERON:0002436	64.99	gold quality
hypothalamus	UBERON:0001898	64.98	gold quality
putamen	UBERON:0001874	64.88	gold quality
prefrontal cortex	UBERON:0000451	64.82	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.65	gold quality
brain	UBERON:0000955	63.90	gold quality
cortical plate	UBERON:0005343	62.30	gold quality
corpus callosum	UBERON:0002336	59.99	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.24	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	57.14	gold quality
tonsil	UBERON:0002372	55.62	gold quality
lymph node	UBERON:0000029	55.54	gold quality
granulocyte	CL:0000094	55.21	gold quality
multicellular organism	UBERON:0000468	55.14	gold quality
urinary bladder	UBERON:0001255	54.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.