C2orf49
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Also known as MGC5509asw
Summary
C2orf49 (chromosome 2 open reading frame 49, HGNC:28772) is a protein-coding gene on chromosome 2q12.2, encoding tRNA-splicing ligase complex subunit ASW (Q9BVC5). Accessory subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’-phosphodiester.
Predicted to be involved in tRNA splicing, via endonucleolytic cleavage and ligation. Located in nucleoplasm. Part of tRNA-splicing ligase complex.
Source: NCBI Gene 79074 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 222 total — 2 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_024093
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28772 |
| Approved symbol | C2orf49 |
| Name | chromosome 2 open reading frame 49 |
| Location | 2q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC5509, asw |
| Ensembl gene | ENSG00000135974 |
| Ensembl biotype | protein_coding |
| Entrez | 79074 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 6 protein_coding
ENST00000258457, ENST00000410049, ENST00000718457, ENST00000899893, ENST00000899894, ENST00000942644
RefSeq mRNA: 2 — MANE Select: NM_024093
NM_001286537, NM_024093
CCDS: CCDS2068, CCDS74550
Canonical transcript exons
ENST00000258457 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000921889 | 105339583 | 105339749 |
| ENSE00000921890 | 105342848 | 105343223 |
| ENSE00004035151 | 105337540 | 105337686 |
| ENSE00004035152 | 105345315 | 105349211 |
Expression profiles
Bgee: expression breadth ubiquitous, 277 present calls, max score 91.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.4253 / max 258.3651, expressed in 1814 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 21809 | 22.4253 | 1814 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 91.28 | gold quality |
| tibia | UBERON:0000979 | 89.27 | gold quality |
| tendon | UBERON:0000043 | 89.18 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 88.62 | gold quality |
| corpus callosum | UBERON:0002336 | 88.54 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.23 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 86.93 | gold quality |
| nasopharynx | UBERON:0001728 | 86.92 | gold quality |
| stromal cell of endometrium | CL:0002255 | 86.56 | gold quality |
| endometrium | UBERON:0001295 | 86.53 | gold quality |
| amniotic fluid | UBERON:0000173 | 86.31 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 86.19 | gold quality |
| monocyte | CL:0000576 | 86.10 | gold quality |
| medial globus pallidus | UBERON:0002477 | 86.10 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 86.07 | gold quality |
| muscle of leg | UBERON:0001383 | 85.99 | gold quality |
| mononuclear cell | CL:0000842 | 85.98 | gold quality |
| gastrocnemius | UBERON:0001388 | 85.91 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 85.74 | gold quality |
| leukocyte | CL:0000738 | 85.56 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 85.52 | gold quality |
| globus pallidus | UBERON:0001875 | 85.44 | gold quality |
| ventricular zone | UBERON:0003053 | 85.37 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.24 | gold quality |
| cortical plate | UBERON:0005343 | 85.19 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 84.84 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 84.80 | gold quality |
| muscle organ | UBERON:0001630 | 84.78 | gold quality |
| ovary | UBERON:0000992 | 84.68 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 84.42 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.10 |
| E-ENAD-20 | no | 47.36 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
192 targeting C2orf49, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | C9H2orf49 | ENSDARG00000042025 |
| mus_musculus | AI597479 | ENSMUSG00000010290 |
| rattus_norvegicus | C9h2orf49 | ENSRNOG00000016447 |
Protein
Protein identifiers
tRNA-splicing ligase complex subunit ASW — Q9BVC5 (reviewed: Q9BVC5)
All UniProt accessions (2): C9J4K0, Q9BVC5
UniProt curated annotations — full annotation on UniProt →
Function. Accessory subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’-phosphodiester. May act as an RNA ligase with broad substrate specificity and may function toward other RNAs.
Subunit / interactions. Component of the tRNA-splicing ligase core complex composed of the catalytic subunit RTCB and the accessory proteins DDX1, C2orf49/Ashwin/ASW, FAM98B and RTRAF/CGI-99.
Subcellular location. Nucleus.
Similarity. Belongs to the ashwin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BVC5-1 | 1 | yes |
| Q9BVC5-2 | 2 |
RefSeq proteins (2): NP_001273466, NP_076998* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR024887 | Ashwin | Family |
Pfam: PF15323
UniProt features (17 total): modified residue 8, compositionally biased region 3, region of interest 2, splice variant 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BVC5-F1 | 66.31 | 0.17 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 189, 193, 197, 198, 112, 143, 182, 184
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-6784531 | tRNA processing in the nucleus |
| R-HSA-72306 | tRNA processing |
| R-HSA-8953854 | Metabolism of RNA |
MSigDB gene sets: 139 (showing top):
GOBP_TRNA_METABOLIC_PROCESS, chr2q12, GOBP_RNA_SPLICING_VIA_ENDONUCLEOLYTIC_CLEAVAGE_AND_LIGATION, GOBP_RNA_SPLICING, GOBP_EMBRYO_DEVELOPMENT, GOBP_TRNA_PROCESSING, REACTOME_METABOLISM_OF_RNA, SCGGAAGY_ELK1_02, MGGAAGTG_GABP_B, GEORGES_TARGETS_OF_MIR192_AND_MIR215, GOBP_EMBRYONIC_MORPHOGENESIS, PILON_KLF1_TARGETS_UP, GOCC_TRNA_SPLICING_LIGASE_COMPLEX, REACTOME_TRNA_PROCESSING_IN_THE_NUCLEUS, REACTOME_TRNA_PROCESSING
GO Biological Process (2): tRNA splicing, via endonucleolytic cleavage and ligation (GO:0006388), embryonic morphogenesis (GO:0048598)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), tRNA-splicing ligase complex (GO:0072669)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| tRNA processing | 1 |
| Metabolism of RNA | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| RNA splicing, via endonucleolytic cleavage and ligation | 1 |
| tRNA processing | 1 |
| anatomical structure morphogenesis | 1 |
| embryo development | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| intracellular protein-containing complex | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
2006 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| C2orf49 | FAM98B | Q52LJ0 | 909 |
| C2orf49 | RTRAF | Q9Y224 | 896 |
| C2orf49 | RTCB | Q9Y3I0 | 743 |
| C2orf49 | DDX1 | Q92499 | 678 |
| C2orf49 | FAM98A | Q8NCA5 | 620 |
| C2orf49 | ZBTB8OS | Q8IWT0 | 479 |
| C2orf49 | EEF1AKMT1 | Q8WVE0 | 437 |
| C2orf49 | NOC3L | Q8WTT2 | 387 |
| C2orf49 | PHYHIPL | Q96FC7 | 383 |
| C2orf49 | ZBED4 | O75132 | 373 |
| C2orf49 | ARR3 | P36575 | 348 |
| C2orf49 | DHX57 | Q6P158 | 333 |
| C2orf49 | CDK11B | P21127 | 306 |
| C2orf49 | OSBPL1A | Q9BXW6 | 296 |
| C2orf49 | FCHSD2 | O94868 | 293 |
IntAct
42 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RNASE1 | RNH1 | psi-mi:“MI:0914”(association) | 0.850 |
| PIN1 | POLR2D | psi-mi:“MI:0914”(association) | 0.640 |
| GLI2 | KIF7 | psi-mi:“MI:0914”(association) | 0.570 |
| RTRAF | C2orf49 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C2orf49 | WFS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATXN1 | C2orf49 | psi-mi:“MI:0915”(physical association) | 0.560 |
| YWHAQ | IGLC7 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX1 | FAM98C | psi-mi:“MI:0914”(association) | 0.530 |
| STK39 | C2orf49 | psi-mi:“MI:0915”(physical association) | 0.400 |
| C2orf49 | PNN | psi-mi:“MI:0915”(physical association) | 0.400 |
| YWHAG | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAZ | SPEG | psi-mi:“MI:0914”(association) | 0.350 |
| STYX | BANF1 | psi-mi:“MI:0914”(association) | 0.350 |
| TAGLN | LOC392647 | psi-mi:“MI:0914”(association) | 0.350 |
| DDX39B | RBM33 | psi-mi:“MI:0914”(association) | 0.350 |
| RTCB | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAE | DEPDC5 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | FOXO6 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAQ | FOXO6 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAZ | HECTD4 | psi-mi:“MI:0914”(association) | 0.350 |
| IGF2BP3 | psi-mi:“MI:0914”(association) | 0.350 | |
| POLRMT | psi-mi:“MI:0914”(association) | 0.350 | |
| SUPT5H | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (66): C2orf49 (Co-fractionation), HNRNPD (Co-fractionation), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS), PNN (Proximity Label-MS), STK39 (Proximity Label-MS), C14orf166 (Proximity Label-MS), C2orf49 (Proximity Label-MS), C2orf49 (Two-hybrid), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS), C2orf49 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2L7I0, A2VDP0, A2YX04, A5D979, B4FM28, B6SLJ0, D3ZVU1, F4I8S3, F4KFC7, F6UH96, G3X912, O01835, Q0J9J6, Q22557, Q24595, Q2HJG4, Q32LR5, Q38796, Q4KM91, Q53WJ1, Q5U3H2, Q65Z40, Q680Q4, Q6E3D5, Q6PI47, Q6Z8M8, Q700C2, Q7KW09, Q7XC57, Q7Y1C4, Q7Y1C5, Q7Z5K2, Q7ZXG4, Q801E2, Q8L840, Q8RY95, Q91W18, Q91ZX6, Q941B6, Q9BVC5
Diamond homologs: A2VDP0, Q32LR5, Q5RJT0, Q5ZK74, Q922M7, Q9BVC5, Q9I8G4
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 46 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| G2/M DNA damage checkpoint | 5 | 20.0× | 1e-04 |
| SARS-CoV-2 Infection | 6 | 16.1× | 5e-05 |
| Transcriptional Regulation by TP53 | 6 | 12.4× | 1e-04 |
| SARS-CoV Infections | 6 | 11.1× | 3e-04 |
| Viral Infection Pathways | 9 | 9.2× | 1e-05 |
| Infectious disease | 9 | 7.5× | 5e-05 |
| Cell Cycle | 6 | 7.2× | 2e-03 |
| Metabolism of RNA | 5 | 7.0× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
222 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 3 |
| Uncertain significance | 123 |
| Likely benign | 61 |
| Benign | 13 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 154902 | GRCh38/hg38 2q11.2-12.2(chr2:101234070-105679157)x1 | Pathogenic |
| 57183 | GRCh38/hg38 2q11.2-12.3(chr2:100378510-108472871)x3 | Pathogenic |
| 145646 | GRCh38/hg38 2q11.2-12.2(chr2:102084275-106085903)x1 | Likely pathogenic |
| 145956 | GRCh38/hg38 2q12.1-12.3(chr2:104381722-107312459)x1 | Likely pathogenic |
| 562648 | GRCh37/hg19 2q12.1-12.2(chr2:104995799-106679055)x1 | Likely pathogenic |
SpliceAI
862 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:105339578:C:A | acceptor_gain | 1.0000 |
| 2:105339578:CGCA:C | acceptor_loss | 1.0000 |
| 2:105339579:GCAG:G | acceptor_loss | 1.0000 |
| 2:105339581:A:AG | acceptor_gain | 1.0000 |
| 2:105339581:A:AT | acceptor_loss | 1.0000 |
| 2:105339582:G:GG | acceptor_gain | 1.0000 |
| 2:105339582:GA:G | acceptor_gain | 1.0000 |
| 2:105339582:GAA:G | acceptor_gain | 1.0000 |
| 2:105339582:GAAGA:G | acceptor_gain | 1.0000 |
| 2:105339745:AAAAG:A | donor_loss | 1.0000 |
| 2:105339746:AAAGG:A | donor_loss | 1.0000 |
| 2:105339747:AAGGT:A | donor_loss | 1.0000 |
| 2:105339748:AGGT:A | donor_loss | 1.0000 |
| 2:105339749:GGTAC:G | donor_loss | 1.0000 |
| 2:105339750:GT:G | donor_loss | 1.0000 |
| 2:105339751:T:A | donor_loss | 1.0000 |
| 2:105342847:GGA:G | acceptor_gain | 1.0000 |
| 2:105343050:A:AG | acceptor_gain | 1.0000 |
| 2:105343060:T:TA | acceptor_gain | 1.0000 |
| 2:105343065:A:AG | acceptor_gain | 1.0000 |
| 2:105343221:ATGG:A | donor_loss | 1.0000 |
| 2:105343222:TGGTA:T | donor_loss | 1.0000 |
| 2:105343224:G:GA | donor_loss | 1.0000 |
| 2:105343224:G:GG | donor_gain | 1.0000 |
| 2:105343225:T:G | donor_loss | 1.0000 |
| 2:105345390:G:GG | donor_gain | 1.0000 |
| 2:105339762:G:GA | donor_gain | 0.9900 |
| 2:105340906:G:T | donor_gain | 0.9900 |
| 2:105342847:GGAGT:G | acceptor_gain | 0.9900 |
| 2:105343220:CATG:C | donor_gain | 0.9900 |
AlphaMissense
1530 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:105345363:T:A | W231R | 0.999 |
| 2:105345363:T:C | W231R | 0.999 |
| 2:105345365:G:C | W231C | 0.998 |
| 2:105345365:G:T | W231C | 0.998 |
| 2:105337649:T:C | L21P | 0.997 |
| 2:105337663:T:C | F26L | 0.997 |
| 2:105337665:C:A | F26L | 0.997 |
| 2:105337665:C:G | F26L | 0.997 |
| 2:105337652:T:C | L22P | 0.996 |
| 2:105339640:T:G | Y53D | 0.996 |
| 2:105337667:T:C | L27P | 0.995 |
| 2:105337643:C:A | P19Q | 0.994 |
| 2:105339672:G:C | R63S | 0.994 |
| 2:105339672:G:T | R63S | 0.994 |
| 2:105345358:T:A | V229D | 0.993 |
| 2:105337679:T:C | L31P | 0.992 |
| 2:105339650:A:C | H56P | 0.992 |
| 2:105339629:T:C | L49P | 0.991 |
| 2:105339638:T:C | L52P | 0.990 |
| 2:105339640:T:A | Y53N | 0.990 |
| 2:105339694:G:A | G71R | 0.990 |
| 2:105339694:G:C | G71R | 0.990 |
| 2:105345349:T:C | I226T | 0.990 |
| 2:105337664:T:C | F26S | 0.989 |
| 2:105337667:T:A | L27H | 0.989 |
| 2:105339652:G:C | A57P | 0.989 |
| 2:105337637:T:C | L17P | 0.988 |
| 2:105337642:C:T | P19S | 0.988 |
| 2:105339693:G:C | W70C | 0.988 |
| 2:105339693:G:T | W70C | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000014573 (2:105380865 T>A), RS1000015759 (2:105341255 A>C,G), RS1000033088 (2:105385053 A>G), RS1000045028 (2:105349600 C>G), RS1000109098 (2:105342517 C>A), RS1000138474 (2:105384356 C>G,T), RS1000144104 (2:105378017 A>C), RS1000196850 (2:105378338 G>A), RS1000228403 (2:105335563 T>TAAAAAG), RS1000242434 (2:105349258 G>T), RS1000285835 (2:105385436 G>A), RS1000412217 (2:105363006 A>G,T), RS1000490843 (2:105384027 C>T), RS1000603195 (2:105354606 C>T), RS1000684113 (2:105373719 C>T)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (3): dilated cardiomyopathy (MONDO:0005021), cardiomyopathy (MONDO:0004994), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587)
Orphanet (3): Dilated cardiomyopathy (Orphanet:217604), Rare cardiomyopathy (Orphanet:167848), Inherited arrhythmogenic cardiomyopathy (Orphanet:247)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001644 | Dilated cardiomyopathy |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005951_42 | Body mass index | 1.000000e-08 |
| GCST008803_3 | Smoking behaviour (cigarette pack-years) | 2.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0009115 | tobacco smoke exposure measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases methylation, affects cotreatment, increases expression, affects expression, decreases expression | 6 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Benzo(a)pyrene | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| methylmercuric chloride | increases expression | 1 |
| quercitrin | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Air Pollutants | increases abundance, affects expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Disulfiram | affects binding, decreases expression | 1 |
| Diuron | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 1 |
| Silicon Dioxide | decreases methylation | 1 |
| Testosterone | increases expression | 1 |
Clinical trials (associated diseases)
158 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00629018 | PHASE2 | COMPLETED | Safety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy |
| NCT00629096 | PHASE2 | COMPLETED | Intracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy |
| NCT00765518 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM) |
| NCT00847964 | PHASE2 | COMPLETED | Safety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery |
| NCT01020968 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy |
| NCT01302171 | PHASE2 | COMPLETED | Bone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy |
| NCT01350310 | PHASE2 | COMPLETED | Safety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy |
| NCT02133911 | PHASE2 | COMPLETED | A Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy |
| NCT03071653 | PHASE2 | SUSPENDED | Left Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study |
| NCT03572660 | PHASE2 | ACTIVE_NOT_RECRUITING | Use of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM |
| NCT03775070 | PHASE2 | COMPLETED | Simvastatin Therapy in Patients With Dilated Cardiomyopathy. |
| NCT04405804 | PHASE2 | UNKNOWN | Early Administration of Ivabradine in Children With Heart Failure |
| NCT05410873 | PHASE2 | COMPLETED | Examining the Effects of Mitochondrial Oxidative Stress in DCM |
| NCT06632834 | PHASE2 | RECRUITING | Outcome-targeted Therapy: Principle and Outcome Evaluation: Clinical Study and Phenotype-genotype Correlation |
| NCT00585546 | PHASE1 | TERMINATED | Harefield Recovery Protocol Study for Patients With Refractory Chronic Heart Failure |
| NCT02293603 | PHASE1 | UNKNOWN | Dilated cardiomYopathy iNtervention With Allogeneic MyocardIally-regenerative Cells (DYNAMIC) |
| NCT03062956 | PHASE1 | COMPLETED | A Single Ascending Dose Study Assessing the Safety, Tolerability, PK and PD of MYK-491 |
| NCT03129568 | PHASE1 | COMPLETED | Transcoronary Infusion of Cardiac Progenitor Cells in Pediatric Dilated Cardiomyopathy |
| NCT04982081 | PHASE1 | UNKNOWN | Treating Congestive HF With hiPSC-CMs Through Endocardial Injection |
| NCT06381466 | PHASE1 | TERMINATED | A Study to Investigate Safety, Tolerability, and Pharmacokinetics of Oral AZD0233 Compared With Placebo in Healthy Adult Participants. |
| NCT06464588 | PHASE1 | RECRUITING | A Phase 1 Open-Label Study of the Safety of Intravenous Allogeneic Neonatal Mesenchymal Cells (nMSCs) in Young Adult (1A) and Pediatric (1B) Patients With Dilated Cardiomyopathy (DCM) |
| NCT06902896 | PHASE1 | COMPLETED | Safety and Efficacy of FAP iCDC in End-stage Dilated Cardiomyopathy |
| NCT07137338 | PHASE1 | RECRUITING | A Phase 1 AAV Gene Therapy Trial Evaluating Safety and Preliminary Efficacy of RP-A701 in Subjects With BAG3 Dilated Cardiomyopathy |
| NCT07241104 | PHASE1 | RECRUITING | A Study of AZD4063 in PLN R14del Dilated Cardiomyopathy |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular cardiomyopathy, cardiomyopathy