C6orf47-AS1

Summary

C6orf47-AS1 (C6orf47 antisense RNA 1, HGNC:39767) is a long non-coding RNA gene on chromosome 6p21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39767
Approved symbol	C6orf47-AS1
Name	C6orf47 antisense RNA 1
Location	6p21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227198
Ensembl biotype	lncRNA
Entrez	106480731
RNAcentral	URS000007F1D7 — lncRNA, 673 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000422049

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422049 — 2 exons

Exon	Start	End
ENSE00001681591	31660400	31660721
ENSE00001712708	31658329	31658679

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 82.30.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.30	gold quality
colonic epithelium	UBERON:0000397	82.29	gold quality
uterine cervix	UBERON:0000002	77.64	gold quality
muscle tissue	UBERON:0002385	77.57	gold quality
apex of heart	UBERON:0002098	75.07	gold quality
tonsil	UBERON:0002372	74.46	gold quality
ovary	UBERON:0000992	73.42	gold quality
blood	UBERON:0000178	73.24	gold quality
thoracic mammary gland	UBERON:0005200	72.33	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.14	gold quality
placenta	UBERON:0001987	69.77	gold quality
liver	UBERON:0002107	69.46	gold quality
ganglionic eminence	UBERON:0004023	69.23	gold quality
skeletal muscle tissue	UBERON:0001134	68.94	gold quality
kidney	UBERON:0002113	68.54	gold quality
cortex of kidney	UBERON:0001225	68.53	gold quality
testis	UBERON:0000473	66.44	gold quality
adult mammalian kidney	UBERON:0000082	65.63	gold quality
prefrontal cortex	UBERON:0000451	65.32	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	65.23	gold quality
heart left ventricle	UBERON:0002084	63.64	gold quality
frontal cortex	UBERON:0001870	63.24	gold quality
ventricular zone	UBERON:0003053	63.03	gold quality
cortical plate	UBERON:0005343	62.62	gold quality
heart	UBERON:0000948	61.84	gold quality
prostate gland	UBERON:0002367	61.71	gold quality
primary visual cortex	UBERON:0002436	60.86	gold quality
multicellular organism	UBERON:0000468	60.80	gold quality
substantia nigra	UBERON:0002038	60.13	gold quality
stomach	UBERON:0000945	59.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.