CA1

gene
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Also known as Car1

Summary

CA1 (carbonic anhydrase 1, HGNC:1368) is a protein-coding gene on chromosome 8q21.2, encoding Carbonic anhydrase 1 (P00915). Catalyzes the reversible hydration of carbon dioxide.

Carbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. This CA1 gene is closely linked to the CA2 and CA3 genes on chromosome 8. It encodes a cytosolic protein that is found at the highest level in erythrocytes. Allelic variants of this gene have been described in some populations. Alternative splicing and the use of alternative promoters results in multiple transcript variants.

Source: NCBI Gene 759 — RefSeq curated summary.

At a glance

  • GWAS associations: 15
  • Clinical variants (ClinVar): 47 total — 4 pathogenic
  • Phenotypes (HPO): 1
  • Druggable target: yes — 70 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_001128831

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1368
Approved symbolCA1
Namecarbonic anhydrase 1
Location8q21.2
Locus typegene with protein product
StatusApproved
AliasesCar1
Ensembl geneENSG00000133742
Ensembl biotypeprotein_coding
OMIM114800
Entrez759

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 21 protein_coding, 5 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000431316, ENST00000517429, ENST00000517590, ENST00000517618, ENST00000518233, ENST00000518341, ENST00000519129, ENST00000519991, ENST00000520093, ENST00000520663, ENST00000520692, ENST00000520990, ENST00000521679, ENST00000521846, ENST00000522389, ENST00000522579, ENST00000522662, ENST00000522814, ENST00000523022, ENST00000523712, ENST00000523858, ENST00000523953, ENST00000524324, ENST00000542576, ENST00000626824, ENST00000875459, ENST00000875460, ENST00000875461

RefSeq mRNA: 7 — MANE Select: NM_001128831 NM_001128829, NM_001128830, NM_001128831, NM_001164830, NM_001291967, NM_001291968, NM_001738

CCDS: CCDS6237

Canonical transcript exons

ENST00000523022 — 8 exons

ExonStartEnd
ENSE000007950678532968985329844
ENSE000021042308532760885328676
ENSE000021233978537804685378113
ENSE000034802718534159985341659
ENSE000035066378533825285338449
ENSE000035880588533249085332552
ENSE000036686208533352585333620
ENSE000037897868533694585337063

Expression profiles

Bgee: expression breadth ubiquitous, 177 present calls, max score 99.96.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 15.8830 / max 7625.9018, expressed in 149 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
9380315.2752145
938020.60787

Top tissues by expression

278 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
mucosa of transverse colonUBERON:000499199.96gold quality
trabecular bone tissueUBERON:000248399.90gold quality
colonic mucosaUBERON:000031799.85gold quality
mucosa of sigmoid colonUBERON:000499399.83gold quality
rectumUBERON:000105299.82gold quality
bone marrow cellCL:000209299.59gold quality
bone marrowUBERON:000237198.89gold quality
monocyteCL:000057695.03gold quality
colonic epitheliumUBERON:000039794.87gold quality
ileal mucosaUBERON:000033194.70gold quality
mononuclear cellCL:000084294.45gold quality
transverse colonUBERON:000115793.08gold quality
bloodUBERON:000017892.28gold quality
leukocyteCL:000073889.52gold quality
large intestineUBERON:000005984.66gold quality
colonUBERON:000115584.08gold quality
diaphragmUBERON:000110383.79gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047382.08gold quality
mucosa of paranasal sinusUBERON:000503079.31gold quality
superficial temporal arteryUBERON:000161478.83gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099177.86silver quality
intestineUBERON:000016077.73gold quality
spleenUBERON:000210675.81gold quality
right lungUBERON:000216773.42gold quality
gingival epitheliumUBERON:000194972.14gold quality
mucosa of urinary bladderUBERON:000125972.06gold quality
hair follicleUBERON:000207372.01gold quality
amniotic fluidUBERON:000017371.60gold quality
epithelial cell of pancreasCL:000008371.16gold quality
germinal epithelium of ovaryUBERON:000130470.16silver quality

Single-cell (SCXA)

Detected in 13 experiment(s), a significant marker in 13.

ExperimentMarker?Max mean expression
E-CURD-122yes10920.16
E-CURD-6yes4463.17
E-HCAD-9yes4244.98
E-MTAB-9221yes3055.92
E-CURD-46yes1945.25
E-HCAD-15yes1019.06
E-GEOD-76312yes797.09
E-HCAD-6yes536.07
E-HCAD-4yes160.88
E-GEOD-125970yes30.86
E-MTAB-8410yes16.10
E-MTAB-9467yes4.31
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): CDX2, GATA1, HOXB7, LMO2, MYB, NR1I3, TAL1

miRNA regulators (miRDB)

26 targeting CA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-126-5P100.0072.713180
HSA-MIR-428299.9975.366408
HSA-MIR-590-3P99.9674.346478
HSA-MIR-367199.9073.043897
HSA-MIR-450399.8571.451869
HSA-MIR-659-3P99.8570.691620
HSA-MIR-94499.8270.853042
HSA-MIR-612699.6268.09996
HSA-MIR-613299.6065.831554
HSA-MIR-6836-5P99.6065.621538
HSA-MIR-21-5P99.4670.541035
HSA-MIR-391599.4568.491905
HSA-MIR-183-3P99.4169.411598
HSA-MIR-590-5P99.2570.76930
HSA-MIR-670-3P99.0368.882404
HSA-MIR-6876-3P98.9765.69765
HSA-MIR-62698.8966.21762
HSA-MIR-34B-3P98.7067.401171
HSA-MIR-6792-5P98.3968.161330
HSA-MIR-451198.3267.971500
HSA-MIR-526B-5P97.4167.991074
HSA-MIR-124397.0765.44719
HSA-MIR-6839-5P96.7468.291088
HSA-MIR-378J96.4466.201020
HSA-MIR-431-5P96.1666.50652

Literature-anchored findings (GeneRIF, showing 33)

  • The X-ray crystallographic structure of the CA I Michigan 1 variant isozyme is reported, both in the presence and absence of a second bound zinc ion coordinated to His 64, His 200, and Arg 67. (PMID:12009884)
  • concentrations in nondialyzed chronic kidney disease patients, and the relationship with acidosis, zinc, anemia, and iron supplementation (PMID:14675565)
  • cytosolic CA I, II, and XIII are downregulated in neoplastic colorectal mucosa compared to normal colorectal mucosa (PMID:15836783)
  • Isothiocyanato sulfonamide thioureas inhibit this enzyme. (PMID:15837325)
  • X-ray crystallographic structure for the adduct of an activator with hCA I. Binding site interactions of activator L-Histidine with active site amino acids (PMID:16870440)
  • study presents the X-ray structure of the foscarnet adduct with CA1 together with the factors governing recognition of such small molecules by a metalloenzyme active site (PMID:17314045)
  • Decreased levels of carbonic anhydrase 1 isozyme is associated with type II diabetes. (PMID:17464559)
  • single mutation of an amino acid not considered essential to catalysis (Phe91Asn) in carbonic anhydrase I, but is near substrate binding pocket, led to increase of catalytic activity; mutant CA I also showed higher affinity for sulfonamide inhibitors (PMID:20624682)
  • Overexpression of CA1 in the synovial tissues of ankylosing spondylitis (AS) patients may promote improper calcification and bone resorption in AS. (PMID:21143847)
  • A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
  • A significant correlation was found between positive carbonic anhydrase I staining and oral squamous cell carcinoma for more advanced clinical stage and larger tumor size, but not for positive lymph node metastasis, distal metastasis, and recurrence. (PMID:22416960)
  • carbonic anhydrase I, phosphoglycerate kinase 1 and apolipoprotein A-I appeared to be the most significant variations of proteins in patients with osteopenia and osteoarthritis (PMID:22619369)
  • The gene encoding CA1 is susceptible to ankylosing spondylitis and plays a role in the process of bone formation. (PMID:22838845)
  • The new prognostic biomarkers GRP78, Fructose-bisphosphate Aldolase A (ALDOA), Carbonic Anhydrase I (CA1) and Peptidyl-prolyl cis-trans isomerase A or Cyclophilin A (PPIA)) provided good survival prediction for TNM stage I-IV patients. (PMID:22996014)
  • may be involved in the pathogenesis of Abdominal aortic aneurysm (PMID:23557951)
  • Myocardial carbonic anhydrase 1/2 activation is significantly elevated in diabetic ischemic cardiomyopathy. (PMID:24670789)
  • Structure-activity relationships study showed that indolylchalcone derivatives have higher inhibitory activities than pyrido[2,3-d]pyrimidine derivatives on hCA I and hCA II. (PMID:25165709)
  • CA1 is highly expressed in the sera of stage I non-small cell lung cancer patients (PMID:26232327)
  • CA1 is a potential oncogene and that it contributes to abnormal cell calcification, apoptosis and migration in breast cancer. (PMID:26459317)
  • We report on the competitive zinc metalation of apo-carbonic anhydrase [CA; metal-free CA (apo-CA)] in the presence of apo-metallothionein 1A domain fragments to identify domain specific determinants of zinc binding and zinc donation (PMID:26475450)
  • We demonstrated that resveratrol, caffeic acid, and tannic acid in stored blood could decrease the sensitivity to oxidation of erythrocytes in vitro but did not exhibit such effects on Carbonic Anhydrase activity. (PMID:27413740)
  • Here are presented solved the first crystal structures of carbonic anhydrase 1and carbonic anhydrase 2 in complex with polmacoxib, at 2.0 A and 1.8 A, respectively. (PMID:27475498)
  • Neuronal carbonic anhydrase I (CA1) appears to be associated with the endoplasmic reticulum subcellular structure. (PMID:27809276)
  • Anti-CA I and II antibody levels were investigated using ELISA in serum samples from 30 patients with Acute Myeloid Leukemia (AML) and 30 healthy peers. Anti-CA I and II antibody titers in the AML group were significantly higher compared with the control group (p=0.0001 and 0.018, respectively). (PMID:28270370)
  • These results showed that flavonoids especially malvin and oenin effectively inhibited hCA I and II isoenzymes. (PMID:28445001)
  • Discovery of potent carbonic anhydrase, acetylcholinesterase, and butyrylcholinesterase enzymes inhibitors: The new amides and thiazolidine-4-ones synthesized on an acetophenone base. (PMID:28544359)
  • These six-membered carbocycles showed nice inhibitory action against AChE and human carbonic anhydrase (hCA) II and I isoforms. The hCA I, II, and AChE were efficiently inhibited by these molecules, with Ki values in the range of 6.70-35.85 nM for hCA I, 18.77-60.84 nM for hCA II, and 0.74-4.60 for AChE, respectively (PMID:28613396)
  • knock-down of the CA1 mRNA in tumour cells enhances/does not change the gene expression of the extracellular matrix (ECM) proteins. (PMID:28782909)
  • Results indicate that the reduced expression of the carbonic anhydrase I (CA1) protein enhances the malignant potential of prostatic (PC3) tumour cells. (PMID:30916466)
  • Overexpression of CA1 mRNA and the CA I Protein in Tumor Cells Does Not Change the Gene Expression of the ECM Proteins. (PMID:31963697)
  • carbonic anhydrase 1 (CA1) and CA4 were identified as potential biomarkers of Colon adenocarcinoma due to their predictive roles in diagnosis and prognosis, and the results were further confirmed by a series of analyses. (PMID:32031891)
  • The Effect of Nanoparticles on the Structure and Enzymatic Activity of Human Carbonic Anhydrase I and II. (PMID:32992797)
  • Carbonic anhydrase activity in the frontal lobe of human brain. (PMID:33682938)

Cross-species orthologs

18 orthologs

OrganismSymbolGene ID
danio_reriocahzENSDARG00000011166
danio_rerioca2ENSDARG00000014488
mus_musculusCar1ENSMUSG00000027556
rattus_norvegicusCar1ENSRNOG00000010698
drosophila_melanogasterCAH13FBGN0033542
drosophila_melanogasterCAH14FBGN0034554
drosophila_melanogasterCAH15FBGN0034560
drosophila_melanogasterCAH7FBGN0037788
drosophila_melanogasterCAH8FBGN0038956
drosophila_melanogasterCAH4FBGN0039235
drosophila_melanogasterCAH9FBGN0039486
drosophila_melanogasterCAH6FBGN0039838
drosophila_melanogasterCAH16FBGN0040628
drosophila_melanogasterCAH5FBGN0040629
drosophila_melanogasterCARPBFBGN0052698
caenorhabditis_elegansWBGENE00000279
caenorhabditis_elegansWBGENE00000283
caenorhabditis_eleganscah-6WBGENE00000284

Paralogs (14): CA11 (ENSG00000063180), CA12 (ENSG00000074410), CA2 (ENSG00000104267), CA9 (ENSG00000107159), CA14 (ENSG00000118298), CA6 (ENSG00000131686), CA10 (ENSG00000154975), CA3 (ENSG00000164879), CA4 (ENSG00000167434), CA7 (ENSG00000168748), CA5B (ENSG00000169239), CA5A (ENSG00000174990), CA8 (ENSG00000178538), CA13 (ENSG00000185015)

Protein

Protein identifiers

Carbonic anhydrase 1P00915 (reviewed: P00915)

Alternative names: Carbonate dehydratase I, Carbonic anhydrase B, Carbonic anhydrase I, Cyanamide hydratase CA1

All UniProt accessions (15): E5RFE7, E5RFL2, E5RG43, E5RG81, E5RGU8, E5RH81, P00915, E5RHP7, E5RHS7, E5RIF9, E5RII2, E5RJF6, E5RJI8, H0YBE2, V9HWE3

UniProt curated annotations — full annotation on UniProt →

Function. Catalyzes the reversible hydration of carbon dioxide. Can hydrate cyanamide to urea.

Subcellular location. Cytoplasm.

Activity regulation. Activated by histamine, imidazole, L-adrenaline, L- and D-histidine, and L- and D-phenylalanine. Inhibited by coumarins, sulfonamide derivatives such as acetazolamide, benzenesulfonamide and derivatives (4-carboxyethylbenzene-sulfonamide, 4-carboxyethylbenzene-sulfonamide ethyl ester, 4-(acetyl-2-aminoethyl)benzene-sulfonamide, 4-aminoethylbenzene-sulfonamide), and ‘prong inhibitors’ BR15, BR17, BR22 and BR30. Activated by a short exposition to Foscarnet (phosphonoformate trisodium salt), but inhibited by a long one. Esterase activity weakly reduced by cyanamide.

Similarity. Belongs to the alpha-carbonic anhydrase family.

RefSeq proteins (7): NP_001122301, NP_001122302, NP_001122303, NP_001158302, NP_001278896, NP_001278897, NP_001729 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001148CA_domDomain
IPR018338Carbonic_anhydrase_a-class_CSConserved_site
IPR023561Carbonic_anhydrase_a-classFamily
IPR036398CA_dom_sfHomologous_superfamily

Pfam: PF00194

Enzyme classification (BRENDA):

  • EC 4.2.1.1 — carbonic anhydrase (BRENDA: 178 organisms, 196 substrates, 2137 inhibitors, 263 Km, 291 kcat entries)

Substrate kinetics (BRENDA)

9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
CO20.012–4700194
4-NITROPHENYL ACETATE0.0024–30.5316
H2CO30.434–112.716
HCO3-9.3–374
P-NITROPHENYL ACETATE3.86–6.84
4-NITROPHENYL PHOSPHATE0.935–2.1952
COS1.861
HISTAMINE7.91
CS20

Catalyzed reactions (Rhea), 2 shown:

  • hydrogencarbonate + H(+) = CO2 + H2O (RHEA:10748)
  • urea = cyanamide + H2O (RHEA:23056)

UniProt features (48 total): strand 16, helix 10, binding site 8, sequence variant 3, turn 3, region of interest 2, initiator methionine 1, chain 1, modified residue 1, sequence conflict 1, domain 1, active site 1

Structure

Experimental structures (PDB)

56 structures, top 30 by resolution.

PDBMethodResolution (Å)
7Q0DX-RAY DIFFRACTION1.24
8CDXX-RAY DIFFRACTION1.33
6I0JX-RAY DIFFRACTION1.35
6Y00X-RAY DIFFRACTION1.37
8S4FX-RAY DIFFRACTION1.39
6F3BX-RAY DIFFRACTION1.4
6I0LX-RAY DIFFRACTION1.4
5E2MX-RAY DIFFRACTION1.41
8Q7GX-RAY DIFFRACTION1.43
6XZOX-RAY DIFFRACTION1.44
8CDZX-RAY DIFFRACTION1.44
7PLFX-RAY DIFFRACTION1.46
9EP2X-RAY DIFFRACTION1.47
7ZL5X-RAY DIFFRACTION1.48
4WR7X-RAY DIFFRACTION1.5
6EVRX-RAY DIFFRACTION1.5
6XZSX-RAY DIFFRACTION1.53
6XZEX-RAY DIFFRACTION1.54
2FOYX-RAY DIFFRACTION1.55
2NMXX-RAY DIFFRACTION1.55
6XZXX-RAY DIFFRACTION1.55
8RLOX-RAY DIFFRACTION1.55
1HCBX-RAY DIFFRACTION1.6
6EX1X-RAY DIFFRACTION1.6
9HWNX-RAY DIFFRACTION1.6
8QUNX-RAY DIFFRACTION1.61
6HWZX-RAY DIFFRACTION1.64
2NN1X-RAY DIFFRACTION1.65
6XZYX-RAY DIFFRACTION1.66
6G3VX-RAY DIFFRACTION1.69

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P00915-F196.970.98

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 65 (proton donor/acceptor)

Ligand- & substrate-binding residues (8): 120; 200–201; 200; 201 (in variant michigan-1); 65 (in variant michigan-1); 68 (in variant michigan-1); 95; 97

Post-translational modifications (1): 2

Function

Pathways and Gene Ontology

Reactome pathways

12 pathways

IDPathway
R-HSA-1237044Erythrocytes take up carbon dioxide and release oxygen
R-HSA-1247673Erythrocytes take up oxygen and release carbon dioxide
R-HSA-1475029Reversible hydration of carbon dioxide
R-HSA-8950505Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-1430728Metabolism
R-HSA-1480926O2/CO2 exchange in erythrocytes
R-HSA-168256Immune System
R-HSA-382551Transport of small molecules
R-HSA-447115Interleukin-12 family signaling
R-HSA-449147Signaling by Interleukins
R-HSA-9020591Interleukin-12 signaling

MSigDB gene sets: 132 (showing top): GNF2_PRDX2, GOMF_CARBONATE_DEHYDRATASE_ACTIVITY, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, RIZKI_TUMOR_INVASIVENESS_3D_DN, SHEPARD_BMYB_MORPHOLINO_DN, GOLDRATH_ANTIGEN_RESPONSE, GNF2_ANK1, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, RHEIN_ALL_GLUCOCORTICOID_THERAPY_UP, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GNF2_SPTA1, GATA1_03

GO Biological Process (1): response to fructose (GO:0009750)

GO Molecular Function (8): arylesterase activity (GO:0004064), carbonate dehydratase activity (GO:0004089), zinc ion binding (GO:0008270), hydro-lyase activity (GO:0016836), cyanamide hydratase activity (GO:0018820), protein binding (GO:0005515), lyase activity (GO:0016829), metal ion binding (GO:0046872)

GO Cellular Component (3): cytoplasm (GO:0005737), cytosol (GO:0005829), extracellular exosome (GO:0070062)

Reactome top-level categories

Rollup of top-8 pathways:

CategoryPathways
O2/CO2 exchange in erythrocytes2
Metabolism1
Interleukin-12 signaling1
Immune System1
Transport of small molecules1
Signaling by Interleukins1
Cytokine Signaling in Immune system1
Interleukin-12 family signaling1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
hydro-lyase activity2
cellular anatomical structure2
response to hexose1
carboxylic ester hydrolase activity1
transition metal ion binding1
carbon-oxygen lyase activity1
binding1
catalytic activity1
cation binding1
intracellular anatomical structure1
cytoplasm1
extracellular vesicle1

Protein interactions and networks

STRING

1770 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CA1CYP24A1Q07973879
CA1ALBP02768657
CA1ATP6V1B1P15313638
CA1PRDX2P31945631
CA1PADI2Q9Y2J8593
CA1SLC2A5P22732588
CA1KANSL3Q9P2N6557
CA1SORDQ00796546
CA1ACHEP22303546
CA1SP6Q3SY56542
CA1ENO1P06733534
CA1MAFKO60675497
CA1TGP01266492
CA1BACH2Q9BYV9491
CA1CA6P23280491

IntAct

15 interactions, top by confidence:

ABTypeScore
CA1TFCP2psi-mi:“MI:0915”(physical association)0.720
CA1E7psi-mi:“MI:0915”(physical association)0.370
CA1HSD17B7psi-mi:“MI:0915”(physical association)0.370
MAPK6CA1psi-mi:“MI:0915”(physical association)0.370
UPF3ACASC3psi-mi:“MI:0914”(association)0.350
ARMH1TUSC2psi-mi:“MI:0914”(association)0.350
KCNG4CA1psi-mi:“MI:0914”(association)0.350
NTF3CA1psi-mi:“MI:0914”(association)0.350

BioGRID (15): TFCP2 (Two-hybrid), TFCP2 (Two-hybrid), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Affinity Capture-MS), CA1 (Two-hybrid), CA1 (Co-fractionation), CA1 (Co-fractionation), CA1 (Two-hybrid), HSD17B7 (Two-hybrid)

ESM2 similar proteins: B0BNN3, O76206, P00441, P00445, P00915, P00916, P00917, P00918, P00919, P00920, P00921, P00922, P07450, P07451, P07452, P07630, P13634, P14141, P16015, P27139, P28755, P35217, P43166, P48282, P48284, P60052, P82205, P83299, Q0IIW3, Q1LZA1, Q27504, Q3SZX4, Q42961, Q5S1S4, Q6C662, Q7M316, Q7M317, Q8HXQ0, Q8HXQ1, Q8HXQ2

Diamond homologs: A0A7H0DN92, A0JN41, B0BNN3, O57211, P00915, P00916, P00917, P00918, P00919, P00920, P00921, P04195, P07450, P07451, P07452, P07630, P0DSY1, P0DSY2, P13634, P14141, P16015, P20508, P23470, P23471, P23589, P27139, P35217, P35218, P43165, P43166, P48282, P48283, P61215, P83299, Q05909, Q1LZA1, Q3SZX4, Q5R4U0, Q5S1S4, Q66HG6

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

47 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic4
Likely pathogenic0
Uncertain significance33
Likely benign2
Benign4

Top pathogenic / likely-pathogenic (4)

Variant IDHGVSClassification
1341980GRCh37/hg19 8q21.11-21.3(chr8:75904944-87097083)x1Pathogenic
17605NM_001128831.4(CA1):c.760G>C (p.Gly254Arg)Pathogenic
17606NM_001128831.4(CA1):c.740G>A (p.Arg247His)Pathogenic
60377GRCh38/hg38 8q21.11-21.2(chr8:73879385-85611466)x1Pathogenic

SpliceAI

1055 predictions. Top by Δscore:

VariantEffectΔscore
8:85328674:CAG:Cacceptor_gain1.0000
8:85329714:T:Adonor_gain1.0000
8:85329840:TTGCC:Tacceptor_gain1.0000
8:85329841:TGCC:Tacceptor_gain1.0000
8:85329843:CC:Cacceptor_gain1.0000
8:85329843:CCCTG:Cacceptor_loss1.0000
8:85329844:CC:Cacceptor_gain1.0000
8:85329845:C:CCacceptor_gain1.0000
8:85329845:CT:Cacceptor_loss1.0000
8:85329846:T:Cacceptor_loss1.0000
8:85332553:C:CGacceptor_loss1.0000
8:85332554:T:Aacceptor_loss1.0000
8:85333520:CTCA:Cdonor_loss1.0000
8:85333521:TCA:Tdonor_loss1.0000
8:85333522:CACC:Cdonor_loss1.0000
8:85333523:A:Tdonor_loss1.0000
8:85333524:C:CGdonor_loss1.0000
8:85333621:C:CCacceptor_gain1.0000
8:85337064:C:CCacceptor_gain1.0000
8:85338246:GCTCA:Gdonor_loss1.0000
8:85338247:CTCA:Cdonor_loss1.0000
8:85338248:TCACC:Tdonor_loss1.0000
8:85338249:CAC:Cdonor_loss1.0000
8:85338250:A:Cdonor_loss1.0000
8:85328672:GCCAG:Gacceptor_gain0.9900
8:85328673:CCAG:Cacceptor_gain0.9900
8:85328673:CCAGC:Cacceptor_gain0.9900
8:85328674:CAGC:Cacceptor_gain0.9900
8:85328676:GC:Gacceptor_loss0.9900
8:85328677:C:CAacceptor_loss0.9900

AlphaMissense

1724 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
8:85328607:G:TR247S0.996
8:85338438:A:GW17R0.995
8:85338438:A:TW17R0.995
8:85328581:T:AR255S0.994
8:85328581:T:GR255S0.994
8:85329730:A:GW210R0.994
8:85329730:A:TW210R0.994
8:85337007:A:GW98R0.994
8:85337007:A:TW98R0.994
8:85338436:C:AW17C0.994
8:85338436:C:GW17C0.994
8:85336979:T:AE107V0.993
8:85338395:G:TP31H0.993
8:85329768:C:TG197D0.992
8:85337005:C:AW98C0.992
8:85337005:C:GW98C0.992
8:85338392:A:TV32D0.992
8:85333619:A:GL119P0.991
8:85338301:A:CN62K0.991
8:85338301:A:TN62K0.991
8:85329766:A:GS198P0.990
8:85329782:G:CF192L0.990
8:85329782:G:TF192L0.990
8:85329784:A:GF192L0.990
8:85337010:G:CH97D0.990
8:85328582:C:GR255T0.989
8:85329781:A:GW193R0.989
8:85329781:A:TW193R0.989
8:85328606:C:GR247P0.988
8:85328663:C:GR228P0.988

dbSNP variants (sampled 300 via entrez): RS1000013899 (8:85344466 G>A,C), RS1000030142 (8:85337778 A>G,T), RS1000051385 (8:85372169 C>T), RS1000162645 (8:85351033 C>T), RS1000219995 (8:85351539 C>T), RS1000318601 (8:85376796 G>A), RS1000320060 (8:85344165 T>A), RS1000342921 (8:85358184 A>G), RS1000371204 (8:85378737 T>A), RS1000389408 (8:85358502 C>A,G), RS1000423140 (8:85351825 G>C), RS1000503079 (8:85349418 T>A,G), RS1000532977 (8:85327586 G>C), RS1000632456 (8:85356550 C>T), RS1000638020 (8:85367092 T>C)

Disease associations

OMIM: gene MIM:114800 | disease phenotypes: MIM:614230

GenCC curated gene-disease

Mondo (4): chromosome 8q21.11 deletion syndrome (MONDO:0013646), metabolic acidosis (MONDO:0000440), renal tubular acidosis (MONDO:0001909), rickets (MONDO:0005520)

Orphanet (1): 8q21.11 microdeletion syndrome (Orphanet:284160)

HPO phenotypes

1 total (1 of 1 shown, HPO-id order):

HPOTerm
HP:0002748Rickets

GWAS associations

15 associations (top):

StudyTraitp-value
GCST002040_1Blood trace element (Zn levels)6.000000e-12
GCST002934_16Zinc levels6.000000e-06
GCST004611_37High light scatter reticulocyte count5.000000e-11
GCST004612_44High light scatter reticulocyte percentage of red cells2.000000e-10
GCST004619_91Reticulocyte fraction of red cells1.000000e-09
GCST004622_17Reticulocyte count2.000000e-10
GCST006585_2230Blood protein levels2.000000e-09
GCST90002385_405High light scatter reticulocyte count4.000000e-37
GCST90002386_483High light scatter reticulocyte percentage of red cells3.000000e-35
GCST90002391_187Mean corpuscular hemoglobin concentration5.000000e-24
GCST90002392_586Mean corpuscular volume5.000000e-15
GCST90002396_430Mean reticulocyte volume1.000000e-30
GCST90002397_341Mean spheric corpuscular volume3.000000e-20
GCST90002405_514Reticulocyte count7.000000e-34
GCST90002406_304Reticulocyte fraction of red cells9.000000e-30

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0007986reticulocyte count
EFO:0004528mean corpuscular hemoglobin concentration
EFO:0010701mean reticulocyte volume

MeSH disease descriptors (2)

DescriptorNameTree numbers
D000141Acidosis, Renal TubularC12.050.351.968.419.815.093; C12.200.777.419.815.093; C12.950.419.815.093; C16.320.831.093; C18.452.076.176.210
D012279RicketsC05.116.198.816; C18.452.104.816; C18.452.174.845; C18.654.521.500.133.770.734

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2095180 (PROTEIN FAMILY), CHEMBL261 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

70 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 5,536,680 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL19METHAZOLAMIDE465
CHEMBL20ACETAZOLAMIDE428,768
CHEMBL750ZONISAMIDE416,649
CHEMBL1054TRICHLORMETHIAZIDE411,619
CHEMBL1055CHLORTHALIDONE420,442
CHEMBL112ACETAMINOPHEN4157,242
CHEMBL1161681NITROUS ACID4286,808
CHEMBL118CELECOXIB4112,844
CHEMBL1235452SULFUR42,163,993
CHEMBL1286LEVETIRACETAM413,997
CHEMBL1354SODIUM ACETATE4594,259
CHEMBL14060PHENOL41,871,332
CHEMBL17DICHLORPHENAMIDE49,022
CHEMBL18ETHOXZOLAMIDE43,042
CHEMBL21SULFANILAMIDE4153,075
CHEMBL2105581VERALIPRIDE41,165
CHEMBL218490DORZOLAMIDE410,216
CHEMBL220491BRINZOLAMIDE48,355
CHEMBL220492TOPIRAMATE435,160
CHEMBL255863NILOTINIB438,627
CHEMBL26SULPIRIDE4
CHEMBL325041BORTEZOMIB4
CHEMBL328560SULTHIAME4
CHEMBL35FUROSEMIDE4
CHEMBL406INDAPAMIDE4
CHEMBL419MAFENIDE4
CHEMBL421SULFASALAZINE4
CHEMBL424SALICYLIC ACID4
CHEMBL435HYDROCHLOROTHIAZIDE4
CHEMBL443052TAVABOROLE4

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Carbonic anhydrases

Most potent curated ligand interactions (18 total), top 18:

LigandActionAffinityParameter
benzolamideInhibition7.82pKi
ethoxzolamideInhibition7.6pKi
methocarbamolInhibition7.6pKi
indisulamInhibition7.51pKi
methazolamideInhibition7.48pKi
zonisamideInhibition7.25pKi
diclofenamideInhibition7.13pKi
compound 11 [PMID: 41150938]Inhibition6.84pKi
acetazolamideInhibition6.6pKi
topiramateInhibition6.6pKi
chlorthalidoneInhibition6.46pKi
compound 5a [PMID: 31287314]Inhibition6.07pKi
compound 5b [PMID: 31287314]Inhibition6.05pKi
sulpirideInhibition5.92pKi
gallic acidInhibition5.5pKi
SLC-0111Inhibition5.29pKi
brinzolamideInhibition4.35pKi
dorzolamideInhibition4.3pKi

Binding affinities (BindingDB)

614 measured of 806 human assays (901 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
3-(butylamino)-4-phenoxy-5-sulfamoylbenzoic acidEC500.0469 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(2-bromophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7k)KI0.405 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(4-bromophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7i)KI0.442 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(3-methoxyphenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7b)KI0.469 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(4-chlorophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7f)KI0.475 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(3-bromophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7j)KI0.501 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(4-methoxyphenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7a)KI0.513 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(3-chlorophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7g)KI0.518 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(m-tolyl)acryloyl)phenyl)-3a,4,7,7atetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7d)KI0.523 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(o-tolyl)acryloyl)phenyl)-3a,4,7,7atetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7e)KI0.529 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(pyridin-4-yl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7n)KI0.549 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(furan-2-yl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7l)KI0.595 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(p-tolyl)acryloyl)phenyl)-3a,4,7,7atetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7c)IC500.597 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(2-chlorophenyl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7h)KI0.603 nM
(3aR,4S,7R,7aS)-2-(4-((E)-3-(thiophen-2-yl)acryloyl)phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione (7m)KI0.636 nM
N-Pentafluorophenylsulfonyl-N-4-nitrobenzyl-glycine hydroxamateKI0.7 nM
N-hydroxy-2-{(4-nitrophenyl)methylsulfonamido}propanamideKI0.7 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxy-3-methylbutanamideKI0.8 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxy-4-methylpentanamideKI0.8 nM
N-hydroxy-2-{(2-nitrophenyl)methylsulfonamido}propanamideKI0.8 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxypropanamideKI0.9 nM
2-N-(4-amino-3-bromo-5-fluorobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI1 nM
5-(4-Amino-3,5-dibromobenzenesulfonamido)-1,3,4-thiadiazole-2-sulfonamideKI1 nM
5-(4-Amino-3,5-dichlorobenzenesulfonamido)-1,3,4-thiadiazole-2-sulfonamideKI1.1 nM
5-{[(4-amino-3-bromo-5-chlorophenyl)sulfonyl]amino}-1,3,4-thiadiazole-2-sulfonamideKI1.3 nM
N-hydroxy-2-{(2-nitrophenyl)methylsulfonamido}acetamideKI1.4 nM
N-hydroxy-2-{(4-nitrophenyl)methylsulfonamido}propanamideKI1.4 nM
2-N-(4-amino-3-chloro-5-fluorobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI1.4 nM
2-[benzyl(2,3,4,5,6-pentafluorobenzene)sulfonamido]-N-hydroxyacetamideKI1.5 nM
N-hydroxy-2-{(4-nitrophenyl)methylsulfonamido}acetamideKI1.5 nM
2-{(2-chlorophenyl)methylsulfonamido}-N-hydroxypropanamideKI1.5 nM
2-N-(4-amino-3-chloro-5-iodobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI1.6 nM
2-Chloro-4-{[2-(methylthio)-1H-benzimidazol-1-yl]acetyl}-benzenesulfonamide (2j)KD1.67 nM
2-N-(4-amino-3-fluoro-5-iodobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI1.7 nM
2-[benzyl(1,1,2,2,3,3,4,4,4-nonafluorobutane)sulfonamido]-N-hydroxy-4-methylpentanamideKI1.9 nM
5-(4-Amino-3-bromobenzenesulfonamido)-1,3,4-thiadiazole-2-sulfonamideKI1.9 nM
5-{[(4-amino-3-bromo-5-iodophenyl)sulfonyl]amino}-1,3,4-thiadiazole-2-sulfonamideKI1.9 nM
2-N-(4-amino-3-iodobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI2.1 nM
5-(4-Amino-3,5-diiodobenzenesulfonamido)-1,3,4-thiadiazole-2-sulfonamideKI2.1 nM
2-[benzyl(1,1,2,2,3,3,4,4,4-nonafluorobutane)sulfonamido]-N-hydroxy-3-methylbutanamideKI2.4 nM
2-N-(4-amino-3-chlorobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI2.5 nM
2-Chloro-4-[(2-propyl-1H-benzimidazol-1-yl)acetyl]benzenesulfonamide (2f)KD2.86 nM
N-hydroxy-2-{(2-nitrophenyl)methylsulfonamido}propanamideKI2.9 nM
Sulfonamide, 8KI3 nM
1-N-[5-Sulfamoyl-1,3,4-thiadiazol-2-yl-(aminosulfonyl-4-phenyl)]-2,3,4,6-tetramethylpyridinium perchlorateKI3 nM
2,3,6-trimethyl-4-phenyl-1-{4-[(5-sulfamoyl-1,3,4-thiadiazol-2-yl)sulfamoyl]phenyl}-1-pyridin-1-ylium perchlorateKI3 nM
2-N-(4-amino-3-fluorobenzene)-1,3,4-thiadiazole-2,5-disulfonamideKI3.1 nM
2-[benzyl(1,1,2,2,3,3,4,4,4-nonafluorobutane)sulfonamido]-N-hydroxypropanamideKI3.2 nM
4-[(2-Butyl-1H-benzimidazol-1-yl)acetyl]-2-chlorobenzenesulfonamide (2g)KD3.33 nM
4-{[2-(Methylsulfanyl)-1H-benzimidazol-1-yl]acetyl}benzenesulfonamide (1j)KD3.57 nM

ChEMBL bioactivities

6100 potent at pChembl≥5 of 6100 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
11.00Ki0.01nMCHEMBL3608873
11.00Ki0.01nMCHEMBL3608874
10.54Kd0.029nMCHEMBL3797893
10.48Kd0.033nMCHEMBL2333418
10.34Ki0.0459nMCHEMBL3585779
10.32Ki0.0483nMCHEMBL3585777
10.30Kd0.05nMCHEMBL2333397
10.30Kd0.05nMCHEMBL2333816
10.30Ki0.05nMCHEMBL3608890
10.17Kd0.067nMCHEMBL2333409
10.16Ki0.069nMCHEMBL6143639
10.05Ki0.09nMCHEMBL3608894
10.00Kd0.1nMCHEMBL2333402
10.00Kd0.1nMCHEMBL2333814
9.96Kd0.11nMCHEMBL2333416
9.92Ki0.12nMCHEMBL4100496
9.92Ki0.12nMCHEMBL4073678
9.90Ki0.1271nMCHEMBL3585776
9.90Ki0.127nMCHEMBL3585775
9.89Kd0.13nMCHEMBL2333408
9.89Kd0.13nMCHEMBL2333815
9.86Ki0.1397nMCHEMBL3585778
9.85IC500.14nMCHEMBL4100496
9.85Kd0.14nMCHEMBL4577993
9.82Kd0.15nMCHEMBL4560953
9.82Kd0.15nMCHEMBL4553790
9.77Kd0.17nMCHEMBL2333405
9.72Kd0.19nMCHEMBL4516072
9.70Kd0.2nMCHEMBL2333406
9.70Kd0.2nMCHEMBL2333404
9.70Kd0.2nMCHEMBL2333419
9.70Kd0.2nMCHEMBL2333417
9.70Ki0.2nMCHEMBL4552380
9.70Ki0.2nMCHEMBL4460315
9.70Ki0.2nMCHEMBL4434661
9.70Ki0.2nMCHEMBL282157
9.68IC500.21nMCHEMBL4073678
9.66Kd0.22nMCHEMBL4441652
9.64Kd0.23nMCHEMBL4567916
9.64Kd0.23nMCHEMBL4462447
9.62Kd0.24nMCHEMBL4448119
9.60Kd0.25nMCHEMBL2333407
9.60Kd0.25nMCHEMBL2333403
9.60Kd0.25nMCHEMBL4587295
9.56Ki0.2747nMCHEMBL3585780
9.55IC500.28nMCHEMBL4098116
9.54IC500.29nMCHEMBL4082551
9.54IC500.29nMCHEMBL4097972
9.54IC500.288nMCHEMBL4099344
9.54Kd0.29nMCHEMBL4516858

PubChem BioAssay actives

4400 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
benzyl N-[1-(3,4-dimethoxyphenyl)ethylsulfamoyl]carbamate1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski<0.0001uM
benzyl N-[1-(2,6-dimethoxyphenyl)ethylsulfamoyl]carbamate1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski<0.0001uM
4-[2-(pyrrolidine-1-carbonyl)-1,3-oxazol-5-yl]benzenesulfonamide1242115: Inhibition of human recombinant carbonic anhydrase 1 preincubated for 15 mins by stopped flow CO2 hydration methodki<0.0001uM
4-[2-(morpholine-4-carbonyl)-1,3-oxazol-5-yl]benzenesulfonamide1242115: Inhibition of human recombinant carbonic anhydrase 1 preincubated for 15 mins by stopped flow CO2 hydration methodki<0.0001uM
benzyl N-[1-(2-methoxyphenyl)ethylsulfamoyl]carbamate1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski0.0001uM
benzyl N-[1-(4-methoxyphenyl)ethylsulfamoyl]carbamate1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski0.0001uM
benzyl N-[1-(2,5-dimethoxyphenyl)ethylsulfamoyl]carbamate1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski0.0001uM
4-(2-methyl-1,3-oxazol-5-yl)thiophene-2-sulfonamide1242115: Inhibition of human recombinant carbonic anhydrase 1 preincubated for 15 mins by stopped flow CO2 hydration methodki0.0001uM
4-[2-(morpholine-4-carbonyl)-1,3-oxazol-5-yl]thiophene-2-sulfonamide1242115: Inhibition of human recombinant carbonic anhydrase 1 preincubated for 15 mins by stopped flow CO2 hydration methodki0.0001uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(2-nitrophenyl)furan-2-yl]methylideneamino]acetamide1453371: Non-competitive inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by Lineweaver-Burk plot analysiski0.0001uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(4-chlorophenyl)furan-2-yl]methylideneamino]acetamide1453368: Inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by bromine thymol blue indicator based assayic500.0001uM
1-(2-bromophenyl)-5-oxo-N-(4-sulfamoylphenyl)pyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0001uM
1-(3,5-dimethyl-4-sulfamoylphenyl)-N-[(E)-(4-nitrophenyl)methylideneamino]-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0001uM
1-[[1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carbonyl]amino]-3-phenylthiourea1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0001uM
4-[1-[(2R)-1-(3-azabicyclo[3.2.2]nonan-3-yl)-3-methyl-1-oxobutan-2-yl]triazol-4-yl]benzenesulfonamide1557414: Inhibition of carbonic anhydrase (unknown origin)ki0.0002uM
methyl 1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carboxylate1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0002uM
N-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxo-1-phenylpyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0002uM
1-(3-bromophenyl)-5-oxo-N-(4-sulfamoylphenyl)pyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0002uM
(2R)-3-phenyl-2-[4-(4-sulfamoylphenyl)triazol-1-yl]-N-(2-thiophen-3-ylethyl)propanamide1557414: Inhibition of carbonic anhydrase (unknown origin)ki0.0002uM
4-[4-(3,5-dimethylpyrazole-1-carbonyl)-2-oxopyrrolidin-1-yl]-2,6-dimethylbenzenesulfonamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0002uM
1-methoxy-2-[1-(sulfamoylamino)ethyl]benzene1231566: Inhibition of esterase activity of carbonic anhydrase 1 in human erythrocytes using PNF as substrate by spectrophotometer analysiski0.0003uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(4-nitrophenyl)furan-2-yl]methylideneamino]acetamide1453368: Inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by bromine thymol blue indicator based assayic500.0003uM
[2-(1,3-benzodioxol-5-ylmethylamino)-2-oxoethyl] N-morpholin-4-ylcarbamodithioate1459104: Inhibition of human erythrocyte carbonic anhydrase-1ic500.0003uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(2,4-dichlorophenyl)furan-2-yl]methylideneamino]acetamide1453368: Inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by bromine thymol blue indicator based assayic500.0003uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(4-chloro-2-nitrophenyl)furan-2-yl]methylideneamino]acetamide1453368: Inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by bromine thymol blue indicator based assayic500.0003uM
[2-(1,3-benzodioxol-5-ylmethylamino)-2-oxoethyl] N-thiomorpholin-4-ylcarbamodithioate1459104: Inhibition of human erythrocyte carbonic anhydrase-1ic500.0003uM
N-[(E)-benzylideneamino]-1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0003uM
3-chloro-4-[4-(3,5-dimethylpyrazole-1-carbonyl)-2-oxopyrrolidin-1-yl]-2,6-dimethylbenzenesulfonamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0003uM
1-(3,5-dimethyl-4-sulfamoylphenyl)-N-[(E)-(4-methoxyphenyl)methylideneamino]-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0003uM
N-[(E)-(4-chlorophenyl)methylideneamino]-1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0003uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(4-methoxyphenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(3-methoxyphenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(4-methylphenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(3-methylphenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(2-methylphenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(4-chlorophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(3-chlorophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1S,2R,6S,7R)-4-[4-[(E)-3-(2-chlorophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(4-bromophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1802576: Esterase Activity Assay from Article 10.1016/j.bioorg.2016.12.001: “Synthesis, characterization, anticancer, antimicrobial and carbonic anhydrase inhibition profiles of novel (3aR,4S,7R,7aS)-2-(4-((E)-3-(3-aryl)acryloyl) phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione derivatives.”ki0.0004uM
(1S,2R,6S,7R)-4-[4-[(E)-3-(3-bromophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1R,2S,6R,7S)-4-[4-[(E)-3-(2-bromophenyl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1802576: Esterase Activity Assay from Article 10.1016/j.bioorg.2016.12.001: “Synthesis, characterization, anticancer, antimicrobial and carbonic anhydrase inhibition profiles of novel (3aR,4S,7R,7aS)-2-(4-((E)-3-(3-aryl)acryloyl) phenyl)-3a,4,7,7a-tetrahydro-1H-4,7-methanoisoindole-1,3(2H)-dione derivatives.”ki0.0004uM
(1S,2R,6S,7R)-4-[4-[(E)-3-(furan-2-yl)prop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1S,2R,6S,7R)-4-[4-[(E)-3-thiophen-2-ylprop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
(1S,2R,6S,7R)-4-[4-[(E)-3-pyridin-4-ylprop-2-enoyl]phenyl]-4-azatricyclo[5.2.1.02,6]dec-8-ene-3,5-dione1849566: Binding affinity to human CA1 assessed as inhibition constant using 4-nitrophenylacetate as substrate by spectrophotometrical analysiski0.0004uM
2-[(5-anilino-1,3,4-thiadiazol-2-yl)sulfanyl]-N-[(E)-[5-(3,4-dichlorophenyl)furan-2-yl]methylideneamino]acetamide1453368: Inhibition of carbonic anhydrase-1 in human erythrocyte membranes assessed as reduction in H+ release using CO2 as substrate by bromine thymol blue indicator based assayic500.0004uM
4-chloro-2-(cyclooctylamino)-5-sulfamoylbenzoic acid1361381: Binding affinity to recombinant human carbonic anhydrase 1 expressed in Escherichia coli assessed as intrinsic Kd in presence of ANS by fluorescent thermal shift assaykd0.0004uM
N-[(E)-(4-bromophenyl)methylideneamino]-1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0004uM
N-(3,5-dimethylpyrazol-1-yl)-1-(3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0004uM
1-[[1-(2-chloro-3,5-dimethyl-4-sulfamoylphenyl)-5-oxopyrrolidine-3-carbonyl]amino]-3-phenylthiourea1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0004uM
N-[(E)-benzylideneamino]-5-oxo-1-(4-sulfamoylphenyl)pyrrolidine-3-carboxamide1515314: Binding affinity to recombinant human CA1 assessed as intrinsic dissociation constant by DSF-based fluorescence thermal shift assaykd0.0004uM

CTD chemical–gene interactions

75 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Acetazolamideaffects binding, decreases activity, decreases reaction15
sodium arsenitedecreases expression, increases expression2
Pyrimidinesdecreases activity2
Tobacco Smoke Pollutiondecreases expression2
3-methylpentyl(4-sulphamoylphenyl)carbamatedecreases activity1
thiosemicarbazidedecreases activity1
sulfamic aciddecreases activity1
oryzalinaffects binding, decreases activity1
silychristindecreases activity1
cobaltous chloridedecreases expression1
chloric aciddecreases activity1
sodium metasilicatedecreases activity1
chalcone epoxideaffects binding, decreases activity1
coumarindecreases activity1
2,6-di-tert-butylphenoldecreases activity1
2,6-xylenoldecreases activity1
potassium periodatedecreases activity1
1,2,4-triazoledecreases activity1
tungstatedecreases activity1
pelargonidin-3-glucosidedecreases activity1
candesartandecreases activity1
CGP 52608affects binding, increases reaction1
vanillindecreases activity1
N-(3-chloro-7-indolyl)-1,4-benzenedisulphonamideaffects binding, decreases activity1
malvidin-3-glucosidedecreases activity1
perchloratedecreases activity1
malvindecreases activity1
Sulfanilamidedecreases activity1
Rosiglitazoneaffects expression1
Topiramateaffects binding, decreases activity1

ChEMBL screening assays

886 unique, capped per target: 852 binding, 32 admet, 2 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3386760BindingInhibition of carbonic anhydrase (unknown origin)Substituted thieno[2,3-b]thiophenes and related congeners: Synthesis, β-glucuronidase inhibition activity, crystal structure, and POM analyses. — Bioorg Med Chem
CHEMBL4013794ADMETInhibition of recombinant human carbonic anhydrase 1 preincubated for 15 mins prior to testing by phenol red based stopped-flow CO2 hydration assay3-Hydroxy-1H-quinazoline-2,4-dione as a New Scaffold To Develop Potent and Selective Inhibitors of the Tumor-Associated Carbonic Anhydrases IX and XII. — J Med Chem
CHEMBL834886FunctionalInhibition constant against human recombinant carbonic anhydrase ICarbonic anhydrase inhibitors. Synthesis and inhibition of cytosolic/tumor-associated carbonic anhydrase isozymes I, II, and IX with boron-containing sulfonamides, sulfamides, and sulfamates: toward agents for boron neutron capture therapy of hypoxic tumors. — Bioorg Med Chem Lett

Cellosaurus cell lines

4 cell lines: 4 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_IX35GM02744Transformed cell lineFemale
CVCL_IX36GM02745Transformed cell lineMale
CVCL_N002GM02742Transformed cell lineMale
CVCL_N003GM02743Transformed cell lineFemale

Clinical trials (associated diseases)

117 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT03035812PHASE4COMPLETEDAlkalinization by Urologists & Nephrologists
NCT03846258PHASE4WITHDRAWNHigh Versus Low Bicarbonate Bath in Critically-ill Patients Receiving Continuous Renal Replacement Therapy
NCT05005793PHASE4RECRUITINGEffect of Alkali Therapy on Vascular and Graft Function in Kidney Transplant Recipients
NCT07424625PHASE4NOT_YET_RECRUITINGA Study of Tris-Hydroxymethyl Aminomethane (THAM) Versus Sodium Bicarbonate in Cardiac Surgical Patients
NCT07464431PHASE4NOT_YET_RECRUITINGSodium Bicarbonate for Critically Ill Patients With Metabolic Acidosis and Acute Kidney Injury
NCT00949832PHASE4COMPLETEDVitamin D and Genetics in Nutritional Rickets
NCT01067898PHASE4COMPLETEDA Study on Oral Vitamin D Megadoses
NCT01578434PHASE4COMPLETEDRole of Calcium And Vitamin D In Nutritional Rickets And It’s Management
NCT03403933PHASE4COMPLETEDVitamin D Supplementation on in Major Orthopedic Surgery
NCT01640119PHASE3UNKNOWNCorrection of Metabolic Acidosis in End Stage Renal Disease (ESRD)
NCT02476253PHASE3COMPLETEDSodium Bicarbonate to Treat Severe Acidosis in the Critically Ill
NCT03317444PHASE3COMPLETEDEvaluation of TRC101 in Subjects With Metabolic Acidosis Associated With Chronic Kidney Disease
NCT03390842PHASE3COMPLETEDLong-term Safety Extension to Study TRCA-301
NCT03710291PHASE3TERMINATEDEvaluation of Effect of TRC101 on Progression of Chronic Kidney Disease in Subjects With Metabolic Acidosis
NCT04727528PHASE3TERMINATEDStudy of the Effect of SZC on Serum Potassium and Serum Bicarbonate in Patients With Hyperkalemia and Metabolic Acidosis Associated With Chronic Kidney Disease
NCT05697770PHASE3ACTIVE_NOT_RECRUITINGSODium BICarbonate for Metabolic Acidosis in the ICU
NCT06545565PHASE3RECRUITINGPrevention of Metabolic Acidosis in Preterm Neonates by Replacing Sodium Chloride With Sodium Acetate in Parenteral Nutrition
NCT07355062PHASE3RECRUITINGA Study to Evaluate the Efficacy and Safety of Veverimer for the Treatment of Metabolic Acidosis
NCT00960232PHASE3COMPLETEDVitamin D, Blood Pressure, Lipids, Infection and Depression
NCT01012414PHASE3TERMINATEDEffect of Vitamin D Supplement on Inflammation Markers in High-Risk Cardiovascular Patients With Chronic Kidney Disease
NCT01315366PHASE3COMPLETEDHypovitaminosis D : A Link Between Bone/Mineral and Fat/Fuel Metabolism
NCT01689779PHASE3COMPLETEDHigh Dose Preoperative Cholecalciferol Supplementation and Perioperative Vitamin D Status
NCT01896544PHASE3COMPLETEDCholecalciferol Supplementation for Sepsis in the ICU
NCT02328404PHASE3COMPLETEDThe Effect of Vitamin D Supplementation Among Overweight Jordanian Women With Polycystic Ovary Syndrome (PCOS)
NCT02434380PHASE3COMPLETEDEffect of Vitamin D Replacement on Maternal and Neonatal Outcomes
NCT03272126PHASE3COMPLETEDImportance of Dosing Regimen for the Effect of Vitamin D Supplementation
NCT05306704PHASE3COMPLETEDHigh-Dose Vitamin D3 Supplementation in the Treatment of Human Immune Deficiency Virus Patients Trial
NCT05425914PHASE3COMPLETEDImpact of Vitamin D3 Supplementation in Non-Sjogren Dry Eye Patients With Low Serum Vitamin D Level
NCT00913796PHASE2COMPLETEDMetabolic Acidosis in Renal Transplant Patients
NCT02303548PHASE2COMPLETEDBicarbonate in Patients With Out-of-hospital Cardiac Arrest
NCT04984226PHASE2RECRUITINGSodium Bicarbonate and Mitochondrial Energetics in Persons With CKD
NCT05147051PHASE2COMPLETEDMeglimine Sodium Succinate for Correction of Metabolic Acidosis in Critically Ill Patients
NCT00001151PHASE2TERMINATEDStudies With 1,25-Dihydroxycholecalciferol
NCT00992797PHASE2UNKNOWNDiabetes Intervention Trial With Vitamin D in Subjects of Nordic and Sub-Indian Ethnicity
NCT01656070PHASE2COMPLETEDVitamin D Supplementation in HIV-infected Youth
NCT02452762PHASE2COMPLETEDRapid Normalization of Vitamin D in Critically Ill Children: A Phase II Dose Evaluation Randomized Controlled Trial
NCT01777178PHASE1COMPLETEDComparison of Standard Versus Low Bicarbonate Hemodialysis
NCT01894594PHASE1TERMINATEDEfficacy, Safety Study and Benefit of Alkali Therapy in Sickle Cell Disease
NCT01452412PHASE2/PHASE3COMPLETEDAlkali Therapy in Chronic Kidney Disease
NCT06366230PHASE1/PHASE2RECRUITINGAdding Urea to the Final Dialysis Fluid