CABP1-DT

Summary

CABP1-DT (CABP1 divergent transcript, HGNC:55491) is a long non-coding RNA gene on chromosome 12q24.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55491
Approved symbol	CABP1-DT
Name	CABP1 divergent transcript
Location	12q24.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC125616.1
Ensembl gene	ENSG00000256008
Ensembl biotype	lncRNA
Entrez	101928300
RNAcentral	URS00026A1FD5 — lncRNA, 1359 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000540369, ENST00000544339, ENST00000667391, ENST00000795289, ENST00000795290, ENST00000795291, ENST00000795292

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000540369 — 2 exons

Exon	Start	End
ENSE00002278200	120629611	120630496
ENSE00004179840	120641463	120641922

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 84.82.

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primary visual cortex	UBERON:0002436	84.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.60	gold quality
prefrontal cortex	UBERON:0000451	82.00	gold quality
frontal cortex	UBERON:0001870	81.51	gold quality
right frontal lobe	UBERON:0002810	80.89	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	80.45	gold quality
superior frontal gyrus	UBERON:0002661	80.15	gold quality
Brodmann (1909) area 9	UBERON:0013540	79.43	gold quality
cerebellar hemisphere	UBERON:0002245	78.83	gold quality
cerebellar cortex	UBERON:0002129	78.77	gold quality
cerebellum	UBERON:0002037	78.74	gold quality
cerebral cortex	UBERON:0000956	78.46	gold quality
right hemisphere of cerebellum	UBERON:0014890	78.24	gold quality
anterior cingulate cortex	UBERON:0009835	77.66	gold quality
cerebellar vermis	UBERON:0004720	69.95	gold quality
brain	UBERON:0000955	69.49	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.72	gold quality
Ammon’s horn	UBERON:0001954	67.42	gold quality
cortical plate	UBERON:0005343	67.05	gold quality
temporal lobe	UBERON:0001871	66.93	gold quality
amygdala	UBERON:0001876	66.86	gold quality
ganglionic eminence	UBERON:0004023	66.30	gold quality
quadriceps femoris	UBERON:0001377	65.13	gold quality
right testis	UBERON:0004534	61.42	gold quality
testis	UBERON:0000473	61.32	gold quality
left testis	UBERON:0004533	61.27	gold quality
hypothalamus	UBERON:0001898	61.22	gold quality
sural nerve	UBERON:0015488	60.94	silver quality
substantia nigra	UBERON:0002038	60.74	gold quality
thymus	UBERON:0002370	60.17	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.