CACNB1
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Summary
CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1, HGNC:1401) is a protein-coding gene on chromosome 17q12, encoding Voltage-dependent L-type calcium channel subunit beta-1 (Q02641). Regulatory subunit of L-type calcium channels.
The protein encoded by this gene belongs to the calcium channel beta subunit family. It plays an important role in the calcium channel by modulating G protein inhibition, increasing peak calcium current, controlling the alpha-1 subunit membrane targeting and shifting the voltage dependence of activation and inactivation. Alternative splicing occurs at this locus and three transcript variants encoding three distinct isoforms have been identified.
Source: NCBI Gene 782 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 89 total — 2 pathogenic
- Druggable target: yes — 3 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_000723
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1401 |
| Approved symbol | CACNB1 |
| Name | calcium voltage-gated channel auxiliary subunit beta 1 |
| Location | 17q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000067191 |
| Ensembl biotype | protein_coding |
| OMIM | 114207 |
| Entrez | 782 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 10 protein_coding, 4 protein_coding_CDS_not_defined, 4 retained_intron
ENST00000344140, ENST00000394303, ENST00000394310, ENST00000492737, ENST00000536613, ENST00000539338, ENST00000577582, ENST00000577926, ENST00000582414, ENST00000582544, ENST00000582877, ENST00000910732, ENST00000910733, ENST00000910734, ENST00000920599, ENST00000963641, ENST00000963642, ENST00000963643
RefSeq mRNA: 3 — MANE Select: NM_000723
NM_000723, NM_199247, NM_199248
CCDS: CCDS11334, CCDS42311, CCDS45665
Canonical transcript exons
ENST00000394303 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002276694 | 39173453 | 39175657 |
| ENSE00003469678 | 39185131 | 39185150 |
| ENSE00003471711 | 39184784 | 39184864 |
| ENSE00003572679 | 39177984 | 39178079 |
| ENSE00003585711 | 39184031 | 39184140 |
| ENSE00003602413 | 39183713 | 39183864 |
| ENSE00003619258 | 39194884 | 39194970 |
| ENSE00003621642 | 39177350 | 39177535 |
| ENSE00003623926 | 39186496 | 39186572 |
| ENSE00003632542 | 39184325 | 39184383 |
| ENSE00003659313 | 39191474 | 39191593 |
| ENSE00003661080 | 39187479 | 39187601 |
| ENSE00003671280 | 39186793 | 39186929 |
| ENSE00003846352 | 39197412 | 39197669 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 98.78.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.6977 / max 151.3608, expressed in 1477 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 165585 | 3.0770 | 1287 |
| 165586 | 1.8104 | 728 |
| 165587 | 0.3165 | 135 |
| 165582 | 0.2397 | 24 |
| 165588 | 0.0757 | 35 |
| 165584 | 0.0701 | 44 |
| 208167 | 0.0561 | 23 |
| 165583 | 0.0521 | 15 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gastrocnemius | UBERON:0001388 | 98.78 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.51 | gold quality |
| triceps brachii | UBERON:0001509 | 98.27 | gold quality |
| muscle of leg | UBERON:0001383 | 97.99 | gold quality |
| muscle organ | UBERON:0001630 | 97.75 | gold quality |
| gluteal muscle | UBERON:0002000 | 97.62 | gold quality |
| vastus lateralis | UBERON:0001379 | 97.39 | gold quality |
| quadriceps femoris | UBERON:0001377 | 97.34 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 97.01 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 96.99 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 96.76 | gold quality |
| diaphragm | UBERON:0001103 | 96.66 | gold quality |
| biceps brachii | UBERON:0001507 | 96.38 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 95.82 | gold quality |
| deltoid | UBERON:0001476 | 95.60 | gold quality |
| tibialis anterior | UBERON:0001385 | 94.73 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.09 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.78 | gold quality |
| muscle tissue | UBERON:0002385 | 92.69 | gold quality |
| cingulate cortex | UBERON:0003027 | 92.56 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.56 | gold quality |
| frontal cortex | UBERON:0001870 | 92.50 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 92.38 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.06 | gold quality |
| neocortex | UBERON:0001950 | 92.02 | gold quality |
| cortical plate | UBERON:0005343 | 91.82 | gold quality |
| body of tongue | UBERON:0011876 | 91.40 | gold quality |
| popliteal artery | UBERON:0002250 | 91.25 | gold quality |
| tibial artery | UBERON:0007610 | 91.24 | gold quality |
| nucleus accumbens | UBERON:0001882 | 90.38 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.19 |
| E-GEOD-75367 | no | 180.13 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
92 targeting CACNB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-1271-5P | 99.91 | 71.99 | 1972 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-659-3P | 99.85 | 70.69 | 1620 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-132-3P | 99.73 | 70.56 | 1424 |
| HSA-MIR-212-3P | 99.73 | 70.65 | 1424 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
Literature-anchored findings (GeneRIF, showing 4)
- Data show that the length-dependent mechanism of modulating inactivation kinetics of beta(2) calcium channel subunits can be confirmed and extended to the beta(1) calcium channel subunit. (PMID:19821165)
- CACNB1, encoding cardiac L-type calcium channel beta 1 subunit, is a potential target for microRNA-328 in transgenic mice. (PMID:21098446)
- These results provide new insights into the role of muscle-specific proteins on the structural arrangement of alpha1S intracellular loops and point to a new conformational effect of the beta1a subunit in supporting skeletal muscle excitation-contraction coupling. (PMID:27129199)
- Data show that mutant variant V156A results in instability of protein subdomains of beta1a subunit leading to a phenotype of Ca(2+) dysregulation that partly resembles that of other malignant hypertension-linked mutations of DHPR alpha1S subunit. (PMID:29212769)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cacnb1 | ENSDARG00000002167 |
| mus_musculus | Cacnb1 | ENSMUSG00000020882 |
| rattus_norvegicus | Cacnb1 | ENSRNOG00000004518 |
| drosophila_melanogaster | Ca-beta | FBGN0287724 |
| caenorhabditis_elegans | ccb-1 | WBGENE00000368 |
| caenorhabditis_elegans | ccb-2 | WBGENE00021125 |
Paralogs (3): CACNB2 (ENSG00000165995), CACNB3 (ENSG00000167535), CACNB4 (ENSG00000182389)
Protein
Protein identifiers
Voltage-dependent L-type calcium channel subunit beta-1 — Q02641 (reviewed: Q02641)
Alternative names: Calcium channel voltage-dependent subunit beta 1
All UniProt accessions (1): Q02641
UniProt curated annotations — full annotation on UniProt →
Function. Regulatory subunit of L-type calcium channels. Regulates the activity of L-type calcium channels that contain CACNA1A as pore-forming subunit. Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit and increases the presence of the channel complex at the cell membrane. Required for functional expression L-type calcium channels that contain CACNA1D as pore-forming subunit. Regulates the activity of L-type calcium channels that contain CACNA1B as pore-forming subunit.
Subunit / interactions. Regulatory subunit of L-type calcium channels that consist of a pore-forming alpha subunit and auxiliary beta, gamma and delta subunits. Interacts with CACNA1A, CACNA1B, CACNA1C and CACNA1S. Component of a calcium channel complex consisting of a pore-forming alpha subunit (CACNA1S) and the ancillary subunits CACNB1 or CACNB2, CACNG1 and CACNA2D1. Identified in a complex with CACNA1C. Identified in a complex with the L-type calcium channel subunits CACNA1C, CACNA2D1, CACNB1 and one of the gamma subunits (CACNG4, CACNG6, CACNG7, or CACNG8). Part of a L-type calcium channel complex that contains CACNA1D, CACNA2D1 and CACNB1. Part of a L-type calcium channel complex that contains CACNA1B, CACNA2D1 and CACNB1. Interacts with JSRP1. Interacts with RYR1. Interacts with CBARP.
Subcellular location. Cell membrane. Sarcolemma.
Tissue specificity. Detected in heart ventricle (at protein level). Isoform 1 and isoform 3 are expressed in brain, heart, spleen, central nervous system and neuroblastoma cells. Isoform 2 is expressed in skeletal muscle.
Similarity. Belongs to the calcium channel beta subunit family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q02641-1 | 1, Beta-1b2, BetaA, Beta-1B, Beta1-2 | yes |
| Q02641-2 | 2, Beta-1M, BetaC, Beta-1a | |
| Q02641-3 | 3, Beta-1b1, BetaB, Beta-1c, Beta1-3 |
RefSeq proteins (3): NP_000714, NP_954855, NP_954856 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000584 | VDCC_L_bsu | Family |
| IPR001452 | SH3_domain | Domain |
| IPR005443 | VDCC_L_b1su | Family |
| IPR008145 | GK/Ca_channel_bsu | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR046937 | CAB1-4_N_A-dom | Domain |
Pfam: PF00625, PF12052
UniProt features (64 total): sequence conflict 25, helix 9, modified residue 7, strand 6, compositionally biased region 5, region of interest 4, splice variant 3, turn 2, chain 1, domain 1, sequence variant 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7VFS | ELECTRON MICROSCOPY | 2.8 |
| 7VFU | ELECTRON MICROSCOPY | 3 |
| 7VFV | ELECTRON MICROSCOPY | 3 |
| 7YG5 | ELECTRON MICROSCOPY | 3 |
| 7XLQ | ELECTRON MICROSCOPY | 3.1 |
| 7VFW | ELECTRON MICROSCOPY | 3.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q02641-F1 | 69.79 | 0.44 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 44, 47, 73, 186, 193, 499, 547
Function
Pathways and Gene Ontology
Reactome pathways
15 pathways
| ID | Pathway |
|---|---|
| R-HSA-112308 | Presynaptic depolarization and calcium channel opening |
| R-HSA-419037 | NCAM1 interactions |
| R-HSA-5576892 | Phase 0 - rapid depolarisation |
| R-HSA-5576893 | Phase 2 - plateau phase |
| R-HSA-9856532 | Mechanical load activates signaling by PIEZO1 and integrins in osteocytes |
| R-HSA-112315 | Transmission across Chemical Synapses |
| R-HSA-112316 | Neuronal System |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-375165 | NCAM signaling for neurite out-growth |
| R-HSA-397014 | Muscle contraction |
| R-HSA-422475 | Axon guidance |
| R-HSA-5576891 | Cardiac conduction |
| R-HSA-8953897 | Cellular responses to stimuli |
| R-HSA-9675108 | Nervous system development |
| R-HSA-9855142 | Cellular responses to mechanical stimuli |
MSigDB gene sets: 212 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, MYOGENIN_Q6, MORF_MSH3, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, TGCACTT_MIR519C_MIR519B_MIR519A, LFA1_Q6, KEGG_MAPK_SIGNALING_PATHWAY, GCANCTGNY_MYOD_Q6, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH, GGGTGGRR_PAX4_03, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, CAGCTG_AP4_Q5, MORF_RAD51L3, CEBPB_01
GO Biological Process (8): calcium ion transport (GO:0006816), chemical synaptic transmission (GO:0007268), positive regulation of muscle contraction (GO:0045933), calcium ion transmembrane transport (GO:0070588), regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (GO:1902514), cellular response to amyloid-beta (GO:1904646), monoatomic ion transport (GO:0006811), monoatomic ion transmembrane transport (GO:0034220)
GO Molecular Function (5): voltage-gated calcium channel activity (GO:0005245), calcium channel regulator activity (GO:0005246), high voltage-gated calcium channel activity (GO:0008331), calcium channel activity (GO:0005262), protein binding (GO:0005515)
GO Cellular Component (8): plasma membrane (GO:0005886), voltage-gated calcium channel complex (GO:0005891), T-tubule (GO:0030315), synapse (GO:0045202), L-type voltage-gated calcium channel complex (GO:1990454), membrane (GO:0016020), monoatomic ion channel complex (GO:0034702), sarcolemma (GO:0042383)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Cardiac conduction | 2 |
| Transmission across Chemical Synapses | 1 |
| NCAM signaling for neurite out-growth | 1 |
| Cellular responses to mechanical stimuli | 1 |
| Neuronal System | 1 |
| Axon guidance | 1 |
| Nervous system development | 1 |
| Muscle contraction | 1 |
| Developmental Biology | 1 |
| Cellular responses to stimuli | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| calcium channel activity | 2 |
| cellular anatomical structure | 2 |
| metal ion transport | 1 |
| anterograde trans-synaptic signaling | 1 |
| muscle contraction | 1 |
| regulation of muscle contraction | 1 |
| positive regulation of multicellular organismal process | 1 |
| calcium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| calcium ion transmembrane transport via high voltage-gated calcium channel | 1 |
| regulation of calcium ion transmembrane transport | 1 |
| cellular response to nitrogen compound | 1 |
| cellular response to oxygen-containing compound | 1 |
| response to amyloid-beta | 1 |
| transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| voltage-gated monoatomic cation channel activity | 1 |
| ion channel regulator activity | 1 |
| voltage-gated calcium channel activity | 1 |
| monoatomic cation channel activity | 1 |
| calcium ion transmembrane transporter activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| calcium channel complex | 1 |
| plasma membrane protein complex | 1 |
| sarcolemma | 1 |
| cell junction | 1 |
| voltage-gated calcium channel complex | 1 |
| T-tubule | 1 |
| transmembrane transporter complex | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
1082 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CACNB1 | CACNA2D1 | P54289 | 978 |
| CACNB1 | CACNG1 | Q06432 | 971 |
| CACNB1 | CACNA1D | Q01668 | 924 |
| CACNB1 | CACNA1C | Q13936 | 865 |
| CACNB1 | CACNA1S | Q13698 | 858 |
| CACNB1 | CACNG4 | Q9UBN1 | 851 |
| CACNB1 | CACNA2D2 | Q9NY47 | 817 |
| CACNB1 | CACNG5 | Q9UF02 | 809 |
| CACNB1 | CACNG3 | O60359 | 808 |
| CACNB1 | CACNA2D4 | Q7Z3S7 | 795 |
| CACNB1 | CACNG8 | Q8WXS5 | 791 |
| CACNB1 | CACNA2D3 | Q8IZS8 | 778 |
| CACNB1 | CACNA1A | P78510 | 765 |
| CACNB1 | CACNG7 | P62955 | 751 |
| CACNB1 | CACNG2 | Q9Y698 | 677 |
IntAct
25 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CACNB1 | CACNB3 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHL15 | CACNB1 | psi-mi:“MI:0914”(association) | 0.640 |
| GEM | CACNB1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| CACNB1 | GEM | psi-mi:“MI:0915”(physical association) | 0.590 |
| CTBP2 | CACNB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EYA1 | PTPN9 | psi-mi:“MI:0914”(association) | 0.530 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | SYT5 | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | CACNB4 | psi-mi:“MI:0914”(association) | 0.350 |
| CACNA1C | DISP2 | psi-mi:“MI:0914”(association) | 0.350 |
| HCN1 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL15 | PPIA | psi-mi:“MI:0914”(association) | 0.350 |
| CACNB1 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| GAN | CACNB1 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL15 | DNAJB5 | psi-mi:“MI:0914”(association) | 0.350 |
| PCYT1A | GNL1 | psi-mi:“MI:0914”(association) | 0.350 |
| ATN1 | CACNB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CACNB1 | ATN1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (21): CACNB2 (Affinity Capture-MS), CACNB3 (Affinity Capture-MS), C19orf26 (Affinity Capture-MS), CACNB1 (Affinity Capture-MS), WDR75 (Affinity Capture-MS), CTBP2 (Two-hybrid), CACNB1 (Affinity Capture-MS), CACNB1 (Affinity Capture-MS), C19orf26 (Affinity Capture-MS), CACNB2 (Affinity Capture-MS), CACNB3 (Affinity Capture-MS), CACNB1 (Affinity Capture-MS), WDR75 (Affinity Capture-MS), CCZ1 (Affinity Capture-MS), CACNB1 (Reconstituted Complex)
ESM2 similar proteins: A6QL72, A7E300, B1WAV2, B9VTT2, E9Q5G3, F1MF74, O00763, O42611, O43815, O55106, O60447, O94776, O94851, P10687, P10894, P48380, P48381, P51400, P54283, P70483, P97366, Q02641, Q0V9K5, Q32NR3, Q4R3I8, Q5EAP5, Q5JSJ4, Q62769, Q63744, Q6DCD0, Q6GL57, Q6PCM2, Q7SYD9, Q811S7, Q8BPM2, Q8CC27, Q8R3Z5, Q8VGC3, Q90828, Q90ZY6
Diamond homologs: D4A055, O00305, P19517, P54283, P54284, P54285, P54286, P54287, P54288, Q02641, Q08289, Q8CC27, Q8R0S4, Q8R3Z5, Q8VGC3, Q9MZL3, Q9MZL5, Q9MZL7
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ERK1/2 | “up-regulates activity” | CACNB1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
89 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 68 |
| Likely benign | 6 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4073416 | NM_000723.5(CACNB1):c.124_133del (p.Asp42fs) | Pathogenic |
| 4073709 | NM_000723.5(CACNB1):c.85-1G>A | Pathogenic |
SpliceAI
2466 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:39175684:C:CT | acceptor_gain | 1.0000 |
| 17:39175685:A:AC | acceptor_gain | 1.0000 |
| 17:39175693:C:CT | acceptor_gain | 1.0000 |
| 17:39175697:C:CT | acceptor_gain | 1.0000 |
| 17:39175698:A:T | acceptor_gain | 1.0000 |
| 17:39175702:G:C | acceptor_gain | 1.0000 |
| 17:39175702:G:GC | acceptor_gain | 1.0000 |
| 17:39177344:CTGTA:C | donor_loss | 1.0000 |
| 17:39177345:TGTA:T | donor_loss | 1.0000 |
| 17:39177347:TA:T | donor_loss | 1.0000 |
| 17:39177532:TTTC:T | acceptor_gain | 1.0000 |
| 17:39177533:TTC:T | acceptor_gain | 1.0000 |
| 17:39177533:TTCCT:T | acceptor_loss | 1.0000 |
| 17:39177536:C:CC | acceptor_gain | 1.0000 |
| 17:39177982:A:AC | donor_gain | 1.0000 |
| 17:39177983:C:CC | donor_gain | 1.0000 |
| 17:39177983:CAG:C | donor_gain | 1.0000 |
| 17:39182913:AAAC:A | donor_gain | 1.0000 |
| 17:39183708:CCCA:C | donor_loss | 1.0000 |
| 17:39183709:CCA:C | donor_loss | 1.0000 |
| 17:39183710:CA:C | donor_loss | 1.0000 |
| 17:39183711:A:AT | donor_loss | 1.0000 |
| 17:39183712:C:CA | donor_loss | 1.0000 |
| 17:39183860:CTCAG:C | acceptor_gain | 1.0000 |
| 17:39183862:CAG:C | acceptor_gain | 1.0000 |
| 17:39183863:AG:A | acceptor_gain | 1.0000 |
| 17:39183865:C:CC | acceptor_gain | 1.0000 |
| 17:39183872:C:CT | acceptor_gain | 1.0000 |
| 17:39183873:A:AC | acceptor_gain | 1.0000 |
| 17:39183873:A:C | acceptor_gain | 1.0000 |
AlphaMissense
3873 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:39177445:G:C | H413D | 1.000 |
| 17:39177480:A:G | L401P | 1.000 |
| 17:39177488:G:C | C398W | 1.000 |
| 17:39177489:C:T | C398Y | 1.000 |
| 17:39177492:G:T | A397D | 1.000 |
| 17:39177501:A:G | L394S | 1.000 |
| 17:39177506:G:C | N392K | 1.000 |
| 17:39177506:G:T | N392K | 1.000 |
| 17:39177516:A:C | L389R | 1.000 |
| 17:39177516:A:G | L389P | 1.000 |
| 17:39177516:A:T | L389Q | 1.000 |
| 17:39177525:T:A | D386V | 1.000 |
| 17:39177527:A:C | F385L | 1.000 |
| 17:39177527:A:T | F385L | 1.000 |
| 17:39177529:A:G | F385L | 1.000 |
| 17:39178000:A:G | L377P | 1.000 |
| 17:39178012:G:T | A373D | 1.000 |
| 17:39178020:T:A | Q370H | 1.000 |
| 17:39178020:T:G | Q370H | 1.000 |
| 17:39178054:C:G | R359P | 1.000 |
| 17:39178058:A:G | S358P | 1.000 |
| 17:39178059:C:A | K357N | 1.000 |
| 17:39178059:C:G | K357N | 1.000 |
| 17:39178061:T:C | K357E | 1.000 |
| 17:39178066:A:G | L355P | 1.000 |
| 17:39178066:A:T | L355H | 1.000 |
| 17:39178068:C:A | R354S | 1.000 |
| 17:39178068:C:G | R354S | 1.000 |
| 17:39178069:C:A | R354M | 1.000 |
| 17:39178069:C:G | R354T | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000112331 (17:39198512 C>T), RS1000150433 (17:39187935 C>T), RS1000198737 (17:39176956 T>C,G), RS1000237945 (17:39187389 C>G,T), RS1000349304 (17:39181003 C>A), RS1000614208 (17:39193960 C>T), RS1000651654 (17:39198207 C>G), RS1000805453 (17:39180669 A>AT), RS1000867162 (17:39181472 A>G), RS1000883654 (17:39177160 A>G), RS1001075094 (17:39192857 G>A), RS1001127863 (17:39188420 C>T), RS1001207630 (17:39188981 T>C), RS1001242348 (17:39188744 AAATAAT>A,AAAT), RS1001411770 (17:39175821 C>T)
Disease associations
OMIM: gene MIM:114207 | disease phenotypes: MIM:615249
GenCC curated gene-disease
Mondo (1): muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12 (MONDO:0014101)
Orphanet (1): Walker-Warburg syndrome (Orphanet:899)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008876_27 | Non-lobar intracerebral hemorrhage (MTAG) | 3.000000e-06 |
| GCST008916_86 | Asthma | 2.000000e-14 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010178 | non-lobar intracerebral hemorrhage |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (4): CHEMBL2363032 (PROTEIN COMPLEX GROUP), CHEMBL3988638 (PROTEIN COMPLEX), CHEMBL3988640 (PROTEIN COMPLEX), CHEMBL4106160 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
3 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 68,018 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1428 | NIMODIPINE | 4 | 32,587 |
| CHEMBL95 | TACRINE | 4 | 35,360 |
| CHEMBL604710 | Z160 | 2 | 71 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
141 potent at pChembl≥5 of 166 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
PubChem BioAssay actives
90 with measured affinity, of 209 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 1-[4-[(3-chlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0400 | uM |
| 1-[4-[(4-chlorophenyl)-(1-methylpiperidin-4-yl)methyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0400 | uM |
| 2-[4-[(2-chlorophenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0500 | uM |
| 1-[4-[(R)-(4-chlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0500 | uM |
| 3,3-diphenyl-1-[4-[phenyl(piperidin-4-yl)methyl]piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0600 | uM |
| 3,3-diphenyl-1-[4-[phenyl-[4-(trifluoromethyl)phenyl]methyl]piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0700 | uM |
| 1-[4-[(2-chlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.0900 | uM |
| 1-[4-[(4-fluorophenyl)-(1-methylpiperidin-4-yl)methyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1000 | uM |
| 1-[4-[(4-chlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1100 | uM |
| 2-[4-[(4-chlorophenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1100 | uM |
| 1-(4-benzhydrylpiperazin-1-yl)-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1100 | uM |
| 3,3-diphenyl-1-[4-[phenyl-[3-(trifluoromethyl)phenyl]methyl]piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1100 | uM |
| 1-[4-[(2,3-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1400 | uM |
| 1-[4-[(S)-(4-chlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1400 | uM |
| N,4-dibenzhydrylpiperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1500 | uM |
| 1-[4-[(3,5-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1700 | uM |
| N-benzhydryl-4-[(2-chlorophenyl)-phenylmethyl]piperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.1800 | uM |
| N-benzhydryl-4-[(2,3-dichlorophenyl)-phenylmethyl]piperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2000 | uM |
| 1-[4-[(2,6-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2100 | uM |
| 1-[4-[(3,5-dimethoxyphenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2100 | uM |
| 1-[4-[(2,3-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2200 | uM |
| 1-[4-[(2,4-dimethylphenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2300 | uM |
| 1-[4-[bis(4-methoxyphenyl)methyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2400 | uM |
| 2-[4-[(2,3-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2400 | uM |
| 1-[4-[(4-methoxyphenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2500 | uM |
| 1-[4-[(2,4-dimethylphenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2600 | uM |
| 2-(4-benzhydrylpiperazin-1-yl)-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2600 | uM |
| 1-[4-[(1-methylpiperidin-3-yl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2700 | uM |
| N-benzhydryl-4-[(4-chlorophenyl)-phenylmethyl]piperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2800 | uM |
| 1-[4-[(3-chlorophenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.2800 | uM |
| 3,3-diphenyl-1-[4-[phenyl-[2-(trifluoromethyl)phenyl]methyl]piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3000 | uM |
| 1-[4-[(4-methylphenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3100 | uM |
| 2-[4-[(3-chlorophenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3200 | uM |
| 1-[4-[(2-chlorophenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3200 | uM |
| N-benzhydryl-4-[(3-chlorophenyl)-phenylmethyl]piperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3400 | uM |
| 1-[4-[(4-fluorophenyl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.3800 | uM |
| 1-[4-[(2,4-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.4600 | uM |
| 1-[4-[(4-chlorophenyl)-phenylmethyl]piperazin-1-yl]-2-(N-phenylanilino)ethanone | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.5000 | uM |
| 3,3-diphenyl-1-[4-[phenyl-(3,4,5-trimethoxyphenyl)methyl]piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.5100 | uM |
| 2-[4-[(2,4-dichlorophenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.5100 | uM |
| 1-[4-[(1-methylpiperidin-4-yl)-phenylmethyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 0.6900 | uM |
| N-tert-butyl-8-[[[(1S,2S)-2-(3-methyl-1,2,4-oxadiazol-5-yl)cyclopropanecarbonyl]amino]methyl]-5-[3-(trifluoromethoxy)phenyl]-3,4-dihydro-1H-isoquinoline-2-carboxamide | 1262825: Inhibition of voltage-gated calcium channel (unknown origin) | ic50 | 0.8000 | uM |
| N-benzhydryl-4-[(2,4-dichlorophenyl)-phenylmethyl]piperazine-1-carboxamide | 459233: Inhibition of L type calcium channel alpha-1c/alpha-2-delta-1/beta-1b expressed in HEK293 cells in presence of -100 mV holding potential by whole-cell patch clamp method | ic50 | 1.0300 | uM |
| 2-[4-[(2,4-dimethylphenyl)-phenylmethyl]piperazin-1-yl]-N,N-diphenylacetamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 1.2500 | uM |
| 5-methyl-1-[(2-nitrophenyl)methyl]-3-(piperidin-1-ylmethyl)indole | 1392176: Inhibition of KCl-induced cytosolic voltage gated calcium channel opening in human SH-SY5Y cells by Fluo-4 AM dye based fluorescence assay | ic50 | 1.8000 | uM |
| 1-[(3-chlorophenyl)methyl]-5-methyl-3-(piperidin-1-ylmethyl)indole | 1392176: Inhibition of KCl-induced cytosolic voltage gated calcium channel opening in human SH-SY5Y cells by Fluo-4 AM dye based fluorescence assay | ic50 | 2.2000 | uM |
| 1-[4-[(1-methylpiperidin-4-yl)methyl]piperazin-1-yl]-3,3-diphenylpropan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 2.4000 | uM |
| 3,3-diphenyl-1-[4-(piperidin-4-ylmethyl)piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 2.5000 | uM |
| 3,3-diphenyl-1-[4-(piperidin-2-ylmethyl)piperazin-1-yl]propan-1-one | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 2.7000 | uM |
| N-benzhydryl-4-[(2,4-dimethylphenyl)-phenylmethyl]piperazine-1-carboxamide | 459232: Inhibition of N type calcium channel alpha-1b/alpha-2-delta-1/beta-1b expressed in HEK293 cells at holding potential of -100 mV by whole-cell patch clamp method | ic50 | 2.7100 | uM |
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 2 |
| Tretinoin | decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| sulforaphane | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| potassium chromate(VI) | affects cotreatment, increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Chelating Agents | affects binding, increases expression | 1 |
| Copper | increases expression, affects binding | 1 |
| Doxorubicin | decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Menthol | decreases expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Silicon Dioxide | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Vanadium | decreases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Sodium Selenite | increases expression | 1 |
| Coal Ash | decreases expression | 1 |
ChEMBL screening assays
19 unique, capped per target: 19 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3737861 | Binding | Inhibition of voltage-gated calcium channel (unknown origin) | Discovery and Pharmacology of a Novel Class of Diacylglycerol Acyltransferase 2 Inhibitors. — J Med Chem |
Cellosaurus cell lines
4 cell lines: 2 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D7LC | Ubigene A-549 CACNB1 KO | Cancer cell line | Male |
| CVCL_D9AM | Ubigene HEK293 CACNB1 KO | Transformed cell line | Female |
| CVCL_SG49 | HAP1 CACNB1 (-) | Cancer cell line | Male |
| CVCL_YA25 | IDG-HEK293T-CACNB1-V5-OE | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12