CALCB
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Also known as FLJ30166CGRP-II
Summary
CALCB (calcitonin related polypeptide beta, HGNC:1438) is a protein-coding gene on chromosome 11p15.2, encoding Calcitonin gene-related peptide 2 (P10092). CALCB/CGRP2 is a peptide hormone that induces vasodilation mediated by the CALCRL-RAMP1 receptor complex.
Enables hormone activity. Involved in calcitonin gene-related peptide receptor signaling pathway. Is active in extracellular space.
Source: NCBI Gene 797 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 35 total
- Druggable target: yes
- MANE Select transcript:
NM_000728
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1438 |
| Approved symbol | CALCB |
| Name | calcitonin related polypeptide beta |
| Location | 11p15.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ30166, CGRP-II |
| Ensembl gene | ENSG00000175868 |
| Ensembl biotype | protein_coding |
| OMIM | 114160 |
| Entrez | 797 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 9 protein_coding
ENST00000324229, ENST00000523376, ENST00000533448, ENST00000887807, ENST00000887808, ENST00000918239, ENST00000918240, ENST00000918241, ENST00000918242
RefSeq mRNA: 1 — MANE Select: NM_000728
NM_000728
CCDS: CCDS7820
Canonical transcript exons
ENST00000324229 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001004431 | 15075061 | 15075198 |
| ENSE00001300426 | 15077286 | 15077470 |
| ENSE00001426742 | 15078083 | 15078637 |
| ENSE00003509258 | 15074710 | 15074804 |
| ENSE00003846628 | 15073593 | 15073663 |
Expression profiles
Bgee: expression breadth ubiquitous, 122 present calls, max score 97.24.
FANTOM5 (CAGE): breadth broad, TPM avg 1.2917 / max 444.7326, expressed in 198 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 113230 | 1.2030 | 152 |
| 113229 | 0.0888 | 43 |
Top tissues by expression
259 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| dorsal root ganglion | UBERON:0000044 | 97.24 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 89.15 | gold quality |
| islet of Langerhans | UBERON:0000006 | 77.00 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 76.52 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 72.34 | gold quality |
| hypothalamus | UBERON:0001898 | 68.34 | gold quality |
| pancreas | UBERON:0001264 | 65.91 | gold quality |
| adenohypophysis | UBERON:0002196 | 64.42 | gold quality |
| body of pancreas | UBERON:0001150 | 61.89 | gold quality |
| periodontal ligament | UBERON:0008266 | 61.24 | gold quality |
| pituitary gland | UBERON:0000007 | 60.24 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 58.68 | gold quality |
| decidua | UBERON:0002450 | 56.55 | gold quality |
| pancreatic ductal cell | CL:0002079 | 56.43 | silver quality |
| hair follicle | UBERON:0002073 | 56.10 | gold quality |
| sigmoid colon | UBERON:0001159 | 55.30 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 55.11 | gold quality |
| spinal cord | UBERON:0002240 | 54.76 | gold quality |
| prefrontal cortex | UBERON:0000451 | 54.66 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 54.62 | gold quality |
| endometrium epithelium | UBERON:0004811 | 54.47 | gold quality |
| cerebellar cortex | UBERON:0002129 | 53.56 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 53.53 | gold quality |
| cerebellum | UBERON:0002037 | 52.70 | gold quality |
| vena cava | UBERON:0004087 | 52.29 | gold quality |
| cortex of kidney | UBERON:0001225 | 51.89 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 51.79 | silver quality |
| right hemisphere of cerebellum | UBERON:0014890 | 51.66 | gold quality |
| metanephros | UBERON:0000081 | 51.43 | gold quality |
| metanephros cortex | UBERON:0010533 | 51.36 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-4850 | no | 7.41 |
| E-ANND-3 | no | 4.19 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, JUN, NFKB
miRNA regulators (miRDB)
60 targeting CALCB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-1229-3P | 99.97 | 66.49 | 906 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-34B-5P | 99.78 | 67.56 | 1175 |
| HSA-MIR-449C-5P | 99.78 | 67.63 | 1168 |
| HSA-MIR-8076 | 99.78 | 68.52 | 1170 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-556-3P | 99.74 | 68.75 | 1203 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
Literature-anchored findings (GeneRIF, showing 5)
- CGRP and ADM are two differentially regulated novel adipose tissue secretion factors exerting autocrine/paracrine roles. (PMID:15761041)
- Calcitonin gene-related peptide stimulates proliferation of alveolar epithelial cells. (PMID:19192276)
- Keratinocyte-derived CGRPbeta may modulate epidermal homeostasis through autocrine/paracrine signaling and may contribute to chronic pain under pathological conditions. (PMID:21641113)
- The results suggest that C12orf39, CSTA, and CALCB are novel ATF4 target genes, and that C12orf39 promoter activity is activated by ATF4 through amino acid response element. (PMID:26967115)
- CALCB rs3829222 T/T Genotype and Low Expression of CALCB Are High-Risk Factors for Adenoid Cystic Carcinoma of Salivary Gland. (PMID:34234876)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | calca | ENSDARG00000056590 |
| mus_musculus | Calcb | ENSMUSG00000030666 |
| rattus_norvegicus | Calcb | ENSRNOG00000011074 |
Paralogs (2): CALCA (ENSG00000110680), IAPP (ENSG00000121351)
Protein
Protein identifiers
Calcitonin gene-related peptide 2 — P10092 (reviewed: P10092)
Alternative names: Beta-type CGRP, Calcitonin gene-related peptide II
All UniProt accessions (2): E7ESF5, P10092
UniProt curated annotations — full annotation on UniProt →
Function. CALCB/CGRP2 is a peptide hormone that induces vasodilation mediated by the CALCRL-RAMP1 receptor complex. Dilates a variety of vessels including the coronary, cerebral and systemic vasculature. Its abundance in the CNS also points toward a neurotransmitter or neuromodulator role.
Subcellular location. Secreted.
Tissue specificity. Expressed in spinal cord, pituitary and thalamus.
Similarity. Belongs to the calcitonin family.
RefSeq proteins (1): NP_000719* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001693 | Calcitonin_peptide-like | Domain |
| IPR015476 | Calcitonin_gene-rel_peptide | Family |
| IPR018360 | Calcitonin_CS | Conserved_site |
| IPR021116 | Calcitonin/adrenomedullin | Family |
| IPR021117 | Calcitonin-like | Family |
Pfam: PF00214
UniProt features (7 total): propeptide 2, signal peptide 1, peptide 1, modified residue 1, disulfide bond 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P10092-F1 | 71.15 | 0.13 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 118
Disulfide bonds (1): 83–88
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-418555 | G alpha (s) signalling events |
| R-HSA-419812 | Calcitonin-like ligand receptors |
| R-HSA-162582 | Signal Transduction |
| R-HSA-372790 | Signaling by GPCR |
| R-HSA-373080 | Class B/2 (Secretin family receptors) |
| R-HSA-388396 | GPCR downstream signalling |
| R-HSA-500792 | GPCR ligand binding |
MSigDB gene sets: 96 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_UP, GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, TGACCTY_ERR1_Q2, GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, SCHAEFFER_PROSTATE_DEVELOPMENT_12HR_DN, JEON_SMAD6_TARGETS_DN, YAMASHITA_METHYLATED_IN_PROSTATE_CANCER, GOBP_REGULATION_OF_CYTOSOLIC_CALCIUM_ION_CONCENTRATION, GOBP_MONOATOMIC_ION_HOMEOSTASIS, GOMF_G_PROTEIN_COUPLED_RECEPTOR_BINDING, GOMF_SIGNALING_RECEPTOR_BINDING, RIGGI_EWING_SARCOMA_PROGENITOR_UP, GOBP_HOMEOSTATIC_PROCESS, GOBP_CHEMICAL_HOMEOSTASIS, GOBP_ADENYLATE_CYCLASE_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY
GO Biological Process (6): intracellular calcium ion homeostasis (GO:0006874), signal transduction (GO:0007165), adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189), regulation of cytosolic calcium ion concentration (GO:0051480), calcitonin gene-related peptide receptor signaling pathway (GO:1990408), calcitonin family receptor signaling pathway (GO:0097646)
GO Molecular Function (5): hormone activity (GO:0005179), neuropeptide hormone activity (GO:0005184), calcitonin receptor binding (GO:0031716), protein binding (GO:0005515), receptor ligand activity (GO:0048018)
GO Cellular Component (2): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Signaling by GPCR | 2 |
| GPCR downstream signalling | 1 |
| Class B/2 (Secretin family receptors) | 1 |
| Signal Transduction | 1 |
| GPCR ligand binding | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| adenylate cyclase-modulating G protein-coupled receptor signaling pathway | 1 |
| adenylate cyclase activator activity | 1 |
| intracellular calcium ion homeostasis | 1 |
| calcitonin family receptor signaling pathway | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| receptor ligand activity | 1 |
| hormone activity | 1 |
| neuropeptide activity | 1 |
| G protein-coupled receptor binding | 1 |
| binding | 1 |
| signaling receptor binding | 1 |
| signal transduction | 1 |
| signaling receptor activator activity | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
524 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CALCB | RAMP1 | O60894 | 965 |
| CALCB | CALCRL | Q16602 | 957 |
| CALCB | IAPP | P10997 | 949 |
| CALCB | RAMP3 | O60896 | 933 |
| CALCB | ADM | P35318 | 918 |
| CALCB | RAMP2 | O60895 | 907 |
| CALCB | CALCR | P30988 | 879 |
| CALCB | MICU1 | Q9BPX6 | 711 |
| CALCB | ADM2 | Q7Z4H4 | 667 |
| CALCB | TAC1 | P20366 | 614 |
| CALCB | TRPV1 | Q8NER1 | 525 |
| CALCB | GAL | P22466 | 454 |
| CALCB | TACR1 | P25103 | 447 |
| CALCB | CRCP | O75575 | 445 |
| CALCB | VIP | P01282 | 439 |
IntAct
12 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CALCB | CIB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IGFBP6 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF212 | CALCB | psi-mi:“MI:0915”(physical association) | 0.400 |
| GINM1 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| GINM1 | FAM234B | psi-mi:“MI:0914”(association) | 0.350 |
| GIP | GNPAT | psi-mi:“MI:0914”(association) | 0.350 |
| ACTA2 | GSN | psi-mi:“MI:0914”(association) | 0.350 |
| ANKEF1 | CALCB | psi-mi:“MI:0914”(association) | 0.350 |
| ATG14 | CALCB | psi-mi:“MI:0914”(association) | 0.350 |
| CALCB | CIB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (12): CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-RNA), CIB1 (Two-hybrid), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-MS), CALCB (Affinity Capture-RNA)
ESM2 similar proteins: A0A1L2F565, B3IWF8, O09163, O57312, O73812, O93464, P01189, P01193, P01194, P01256, P01355, P01356, P04089, P06307, P06881, P07660, P09240, P10092, P10093, P10286, P12760, P23362, P37042, P41520, P45656, P48645, P55247, P81564, P81872, P87352, Q28588, Q75V93, Q75V94, Q766Y6, Q766Y7, Q805D3, Q862B1, Q90Y63, Q91082, Q99JA0
Diamond homologs: B3IWF7, B3IWF8, B3IWF9, P01256, P01257, P01258, P01261, P06881, P07660, P10092, P10093, P10286, P12966, P12967, P12969, P17716, P22889, P30880, P30881, P31888, P41547, P70160, Q28207, Q75V93, Q75V94, Q75V95, Q766Y6, Q766Y7, Q862B1, Q99JA0, Q99MP3, Q9MYV1, Q9N0T2, Q9N0T3, Q9N0V5, P01263, P81564, P10997, P12968, P19890
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
35 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 30 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1107 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:14967863:CAGGA:C | acceptor_gain | 1.0000 |
| 11:14967864:A:T | acceptor_gain | 1.0000 |
| 11:14967867:A:AC | acceptor_gain | 1.0000 |
| 11:14967867:A:C | acceptor_gain | 1.0000 |
| 11:14970071:CAGAC:C | acceptor_gain | 1.0000 |
| 11:14970072:AGAC:A | acceptor_gain | 1.0000 |
| 11:14970073:GAC:G | acceptor_gain | 1.0000 |
| 11:14970073:GACC:G | acceptor_loss | 1.0000 |
| 11:14970074:AC:A | acceptor_gain | 1.0000 |
| 11:14970074:ACCT:A | acceptor_loss | 1.0000 |
| 11:14970075:CC:C | acceptor_gain | 1.0000 |
| 11:14970075:CCTG:C | acceptor_loss | 1.0000 |
| 11:14970076:C:CC | acceptor_gain | 1.0000 |
| 11:15074709:GA:G | acceptor_gain | 1.0000 |
| 11:15075194:TCCAG:T | donor_loss | 1.0000 |
| 11:15075195:CCAG:C | donor_loss | 1.0000 |
| 11:15075197:AGG:A | donor_loss | 1.0000 |
| 11:15075198:GGTGA:G | donor_loss | 1.0000 |
| 11:15075199:G:GC | donor_loss | 1.0000 |
| 11:15075200:T:G | donor_loss | 1.0000 |
| 11:15077272:A:AG | acceptor_gain | 1.0000 |
| 11:15077272:ATCTT:A | acceptor_gain | 1.0000 |
| 11:15077273:T:G | acceptor_gain | 1.0000 |
| 11:15077276:T:A | acceptor_gain | 1.0000 |
| 11:15077279:A:AG | acceptor_gain | 1.0000 |
| 11:15077280:A:G | acceptor_gain | 1.0000 |
| 11:15077282:TCA:T | acceptor_loss | 1.0000 |
| 11:15077284:A:AG | acceptor_gain | 1.0000 |
| 11:15077285:G:GA | acceptor_gain | 1.0000 |
| 11:15077285:GC:G | acceptor_gain | 1.0000 |
AlphaMissense
822 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:15077413:T:C | F118L | 0.979 |
| 11:15077415:T:A | F118L | 0.979 |
| 11:15077415:T:G | F118L | 0.979 |
| 11:15077309:G:A | C83Y | 0.935 |
| 11:15077323:T:C | C88R | 0.934 |
| 11:15077310:C:G | C83W | 0.932 |
| 11:15077325:T:G | C88W | 0.929 |
| 11:15074755:A:C | S13R | 0.925 |
| 11:15074757:T:A | S13R | 0.925 |
| 11:15074757:T:G | S13R | 0.925 |
| 11:15077308:T:C | C83R | 0.925 |
| 11:15077339:T:C | L93P | 0.924 |
| 11:15077336:G:C | R92P | 0.923 |
| 11:15077323:T:A | C88S | 0.920 |
| 11:15077324:G:C | C88S | 0.920 |
| 11:15077383:T:C | F108L | 0.915 |
| 11:15077385:C:A | F108L | 0.915 |
| 11:15077385:C:G | F108L | 0.915 |
| 11:15077417:G:A | G119D | 0.915 |
| 11:15077324:G:A | C88Y | 0.911 |
| 11:15077309:G:T | C83F | 0.905 |
| 11:15077393:C:T | T111I | 0.902 |
| 11:15077341:G:C | A94P | 0.901 |
| 11:15077339:T:A | L93Q | 0.900 |
| 11:15077351:T:A | L97Q | 0.900 |
| 11:15077308:T:A | C83S | 0.897 |
| 11:15077309:G:C | C83S | 0.897 |
| 11:15077324:G:T | C88F | 0.896 |
| 11:15077351:T:C | L97P | 0.892 |
| 11:15077414:T:G | F118C | 0.887 |
dbSNP variants (sampled 300 via entrez): RS1000390208 (11:15071645 C>A,T), RS1000828768 (11:15075828 G>T), RS1000932244 (11:15076110 G>C), RS1001162151 (11:15074384 A>C,G), RS1001276587 (11:15074692 G>A,C), RS1001363140 (11:15075801 G>A), RS1002148091 (11:15076894 CTTCT>C), RS1002832346 (11:15073079 A>G), RS1002948744 (11:15073225 C>A), RS1003030638 (11:15078685 T>A), RS1003164272 (11:15071981 C>G), RS1003280599 (11:15072210 G>A,C), RS1003729420 (11:15078119 T>A), RS1005046817 (11:15079117 C>T), RS1005401459 (11:15078014 C>T)
Disease associations
OMIM: gene MIM:114160 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008256_1 | Diverticulitis | 4.000000e-07 |
| GCST90020028_1979 | Hip circumference adjusted for BMI | 2.000000e-12 |
| GCST90020028_1980 | Hip circumference adjusted for BMI | 5.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3713541 (SINGLE PROTEIN), CHEMBL3832947 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
24 potent at pChembl≥5 of 24 total, top 24 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.20 | IC50 | 0.631 | nM | CHEMBL4873687 |
| 9.00 | IC50 | 1 | nM | CHEMBL4851152 |
| 8.90 | IC50 | 1.259 | nM | CHEMBL4850259 |
| 8.70 | IC50 | 1.995 | nM | CHEMBL4877585 |
| 8.60 | IC50 | 2.512 | nM | CHEMBL4879142 |
| 8.50 | IC50 | 3.162 | nM | CHEMBL4850583 |
| 8.40 | IC50 | 3.981 | nM | CHEMBL4871934 |
| 8.40 | IC50 | 3.981 | nM | CHEMBL4857810 |
| 8.30 | IC50 | 5.012 | nM | CHEMBL4866915 |
| 8.30 | IC50 | 5.012 | nM | CHEMBL4852669 |
| 8.30 | IC50 | 5.012 | nM | CHEMBL4861626 |
| 8.10 | IC50 | 7.943 | nM | CHEMBL4866548 |
| 8.10 | IC50 | 7.943 | nM | CHEMBL4874651 |
| 7.60 | IC50 | 25.12 | nM | CHEMBL4862324 |
| 7.30 | IC50 | 50.12 | nM | CHEMBL4876643 |
| 7.00 | IC50 | 100 | nM | CHEMBL4851106 |
| 7.00 | IC50 | 100 | nM | CHEMBL4870543 |
| 7.00 | IC50 | 100 | nM | CHEMBL4878394 |
| 6.90 | IC50 | 125.9 | nM | CHEMBL4856402 |
| 6.70 | IC50 | 199.5 | nM | CHEMBL4853766 |
| 6.40 | IC50 | 398.1 | nM | CHEMBL4874859 |
| 6.30 | IC50 | 501.2 | nM | CHEMBL4865654 |
| 6.10 | IC50 | 794.3 | nM | CHEMBL4846989 |
| 5.50 | IC50 | 3162 | nM | CHEMBL4876213 |
PubChem BioAssay actives
24 with measured affinity, of 24 total; 24 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[[2-[(diaminomethylideneamino)methyl]phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0006 | uM |
| N-[[2-[(cyclopropylamino)methyl]phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0010 | uM |
| N-[[2-(1-aminoethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0013 | uM |
| N-[[2-(azetidin-1-ylmethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0020 | uM |
| N-[[2-(2-aminoethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0025 | uM |
| N-[[2-(imidazol-1-ylmethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0032 | uM |
| N-[(2-aminophenyl)methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0040 | uM |
| 2,2-dimethyl-N-[[2-(methylaminomethyl)phenyl]methyl]-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0040 | uM |
| N-[[2-(aminomethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0050 | uM |
| N-[[2-(hydroxymethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0050 | uM |
| N-(1H-indazol-4-ylmethyl)-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0050 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-[(2-pyrrolidin-3-ylphenyl)methyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0079 | uM |
| 2,2-dimethyl-N-[[2-(morpholin-4-ylmethyl)phenyl]methyl]-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0079 | uM |
| N-[(2-cyanophenyl)methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0251 | uM |
| 2-[[2,2-dimethylpropanoyl-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]amino]methyl]benzamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.0501 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-(pyridin-2-ylmethyl)propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.1000 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-[(2-phenylpyrazol-3-yl)methyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.1000 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-(1,3-thiazol-2-ylmethyl)propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.1000 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-(1,2,3,4-tetrahydroisoquinolin-8-ylmethyl)propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.1259 | uM |
| N-[1-[2-(aminomethyl)phenyl]ethyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.1995 | uM |
| 2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]-N-[(2-pyridin-3-ylphenyl)methyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.3981 | uM |
| N-[[3-(aminomethyl)-2-pyridinyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.5012 | uM |
| N-[[3-(aminomethyl)phenyl]methyl]-2,2-dimethyl-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 0.7943 | uM |
| 2,2-dimethyl-N-[(1-methylpiperidin-3-yl)methyl]-N-[2-oxo-2-[(2’-oxospiro[1,3-dihydroindene-2,3’-1H-pyrrolo[2,3-b]pyridine]-5-yl)amino]ethyl]propanamide | 1761961: Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 mins by TR-FRET assay | ic50 | 3.1623 | uM |
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, increases methylation | 8 |
| Capsaicin | increases secretion, decreases reaction, decreases activity, increases expression | 3 |
| Cisplatin | affects response to substance, affects cotreatment, decreases expression | 2 |
| Tunicamycin | increases expression | 2 |
| tungsten carbide | affects cotreatment, increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| tobacco tar | decreases reaction, increases expression | 1 |
| diallyl disulfide | decreases reaction, increases expression | 1 |
| hydroquinone | increases expression | 1 |
| capsazepine | decreases reaction, increases expression | 1 |
| fipronil | affects cotreatment, increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Vorinostat | affects cotreatment, increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation, increases methylation | 1 |
| Cobalt | affects cotreatment, increases expression | 1 |
| Copper | decreases expression, affects binding | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| DEET | affects cotreatment, increases expression | 1 |
| Diethylnitrosamine | increases expression | 1 |
| Disulfiram | affects binding, decreases expression | 1 |
| Tretinoin | affects expression | 1 |
| Thapsigargin | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4820959 | Binding | Antagonist activity at human CGRP-2 (8 to 37 residues) expressed in 1321N1 cells assessed as inhibition of forskolin-induced cAMP accumulation preincubated for 30 mins followed by forskolin addition in presence of IBMX and measured after 15 | Discovery of a First-In-Class Small Molecule Antagonist against the Adrenomedullin-2 Receptor: Structure-Activity Relationships and Optimization. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): diverticulitis