CALHM6-AS1

Summary

CALHM6-AS1 (CALHM6 antisense RNA 1, HGNC:40971) is a long non-coding RNA gene on chromosome 6q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40971
Approved symbol	CALHM6-AS1
Name	CALHM6 antisense RNA 1
Location	6q22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP1-93H18.6
Ensembl gene	ENSG00000244158
Ensembl biotype	lncRNA
Entrez	116435295
RNAcentral	URS00025E343F — lncRNA, 803 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000476099

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000476099 — 2 exons

Exon	Start	End
ENSE00001897595	116463619	116463692
ENSE00001955550	116460739	116461194

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 90.19.

Top tissues by expression

224 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.19	gold quality
buccal mucosa cell	CL:0002336	87.75	gold quality
epithelium of nasopharynx	UBERON:0001951	66.45	silver quality
blood	UBERON:0000178	65.89	gold quality
bone marrow	UBERON:0002371	64.47	gold quality
ileal mucosa	UBERON:0000331	64.09	gold quality
duodenum	UBERON:0002114	64.03	silver quality
oviduct epithelium	UBERON:0004804	62.26	gold quality
lymph node	UBERON:0000029	62.08	gold quality
tibialis anterior	UBERON:0001385	60.85	silver quality
monocyte	CL:0000576	60.80	gold quality
pancreatic ductal cell	CL:0002079	59.71	silver quality
stromal cell of endometrium	CL:0002255	55.97	gold quality
lower lobe of lung	UBERON:0008949	55.70	silver quality
decidua	UBERON:0002450	55.15	gold quality
superficial temporal artery	UBERON:0001614	55.10	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
fallopian tube	UBERON:0003889	53.64	gold quality
islet of Langerhans	UBERON:0000006	53.52	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
granulocyte	CL:0000094	53.32	gold quality
palpebral conjunctiva	UBERON:0001812	52.99	gold quality
deltoid	UBERON:0001476	52.95	silver quality
epithelium of mammary gland	UBERON:0003244	52.92	gold quality
pancreas	UBERON:0001264	52.90	gold quality
mammary duct	UBERON:0001765	52.88	gold quality
calcaneal tendon	UBERON:0003701	52.79	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.