CALML3
gene geneOn this page
Also known as CLP
Summary
CALML3 (calmodulin like 3, HGNC:1452) is a protein-coding gene on chromosome 10p15.1, encoding Calmodulin-like protein 3 (P27482). May function as a specific light chain of unconventional myosin-10 (MYO10), also enhances MYO10 translation, possibly by acting as a chaperone for the emerging MYO10 heavy chain protein.
Predicted to enable calcium ion binding activity. Located in extracellular exosome.
Source: NCBI Gene 810 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 27 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_005185
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1452 |
| Approved symbol | CALML3 |
| Name | calmodulin like 3 |
| Location | 10p15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CLP |
| Ensembl gene | ENSG00000178363 |
| Ensembl biotype | protein_coding |
| OMIM | 114184 |
| Entrez | 810 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000315238
RefSeq mRNA: 1 — MANE Select: NM_005185
NM_005185
CCDS: CCDS7069
Canonical transcript exons
ENST00000315238 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001234570 | 5524961 | 5526771 |
Expression profiles
Bgee: expression breadth ubiquitous, 177 present calls, max score 99.33.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 6.5547 / max 1765.8783, expressed in 100 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 103644 | 6.5547 | 100 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.33 | gold quality |
| gingiva | UBERON:0001828 | 99.27 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.20 | gold quality |
| mammalian vulva | UBERON:0000997 | 99.00 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 98.73 | gold quality |
| esophagus mucosa | UBERON:0002469 | 98.64 | gold quality |
| upper arm skin | UBERON:0004263 | 98.47 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 98.21 | gold quality |
| oral cavity | UBERON:0000167 | 97.68 | gold quality |
| skin of leg | UBERON:0001511 | 96.92 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.60 | gold quality |
| cervix epithelium | UBERON:0004801 | 96.29 | gold quality |
| zone of skin | UBERON:0000014 | 96.17 | gold quality |
| hair follicle | UBERON:0002073 | 96.11 | gold quality |
| squamous epithelium | UBERON:0006914 | 96.09 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 96.01 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 96.00 | gold quality |
| penis | UBERON:0000989 | 94.04 | gold quality |
| body of tongue | UBERON:0011876 | 93.61 | gold quality |
| nipple | UBERON:0002030 | 93.28 | gold quality |
| upper leg skin | UBERON:0004262 | 93.24 | gold quality |
| mouth mucosa | UBERON:0003729 | 92.42 | gold quality |
| buccal mucosa cell | CL:0002336 | 91.97 | gold quality |
| minor salivary gland | UBERON:0001830 | 91.39 | gold quality |
| tongue | UBERON:0001723 | 91.28 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 90.31 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 90.08 | gold quality |
| vagina | UBERON:0000996 | 89.88 | gold quality |
| tonsil | UBERON:0002372 | 86.85 | gold quality |
| thymus | UBERON:0002370 | 86.13 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-1 | yes | 1897.61 |
| E-MTAB-10855 | yes | 1548.79 |
| E-CURD-79 | yes | 1430.64 |
| E-CURD-114 | yes | 143.48 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
17 targeting CALML3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-504-3P | 99.30 | 67.18 | 1745 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-4656 | 98.79 | 66.22 | 1306 |
| HSA-MIR-6801-3P | 98.04 | 64.64 | 805 |
| HSA-MIR-6810-3P | 97.96 | 64.57 | 1023 |
| HSA-MIR-4669 | 97.94 | 62.71 | 224 |
| HSA-MIR-665 | 97.60 | 65.64 | 1781 |
| HSA-MIR-6894-3P | 96.73 | 65.64 | 798 |
| HSA-MIR-423-3P | 95.99 | 67.75 | 62 |
| HSA-MIR-6741-5P | 93.86 | 63.06 | 437 |
| HSA-MIR-4730 | 90.12 | 69.65 | 64 |
Literature-anchored findings (GeneRIF, showing 8)
- CLP may be required during terminal differentiation to increase myosin-10 function as cells migrate toward the upper layers and establish new adhesive contacts. (PMID:17130134)
- increased CLP expression and CLP-mediated Myo10 function are important for skin differentiation and wound reepithelialization (PMID:18818677)
- expression was readily detected in areas of normal oral mucosa, while a notable downregulation of expression occurred in areas of malignant transformation (PMID:19166543)
- Increased CALML3 expression in suprabasal layers is characteristic for differentiating keratinocytes in normal epidermis, and nuclear expression of CALML3 inversely correlates with expression of the proliferation marker Ki-67. (PMID:23638045)
- We identified calmodulin-like protein 3 (CALML3) as a key sensor of this SNP and a coregulator of ERalpha, which contributes to differential gene transcription regulation in an estrogen and SERM-dependent fashion. Furthermore, using CRISPR/Cas9-engineered ZR75-1 breast cancer cells with different ZNF423 SNP genotypes, striking differences in cellular responses to SERMs and PARP inhibitors, alone or in combination (PMID:28821270)
- UVB irradiation induced increase in apoptosis, Reactive Oxygen Species production and Ca2+ concentration of human lens epithelial cells , in part, by downregulating the expression of CALML3 and involved oxidative stress, Ca2+, JNK1/2 and ERK1/2 signaling pathways, suggesting that investigating CALML3 may useful for developing cataract treatment. (PMID:29436594)
- Loss of CALML3 predicts shorter overall and relapse-free survival in postoperative hepatocellular carcinoma (HCC) patients, thus providing a prognostic biomarker and therapy target in HCC. (PMID:29445139)
- Metformin suppresses gastric cancer through stimulating Calml3 secretion from TAFs. (PMID:30320344)
Cross-species orthologs
12 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | calm1a | ENSDARG00000021811 |
| danio_rerio | calm1b | ENSDARG00000034187 |
| mus_musculus | Calml3 | ENSMUSG00000063130 |
| rattus_norvegicus | Calml3 | ENSRNOG00000031955 |
| drosophila_melanogaster | TpnC4 | FBGN0033027 |
| caenorhabditis_elegans | WBGENE00000285 | |
| caenorhabditis_elegans | WBGENE00000287 | |
| caenorhabditis_elegans | pat-10 | WBGENE00003934 |
| caenorhabditis_elegans | WBGENE00006583 | |
| caenorhabditis_elegans | WBGENE00008453 | |
| caenorhabditis_elegans | F35C12.3 | WBGENE00009408 |
| caenorhabditis_elegans | WBGENE00015264 |
Paralogs (20): CABP7 (ENSG00000100314), CABP5 (ENSG00000105507), CALML4 (ENSG00000129007), CALM2 (ENSG00000143933), CETN2 (ENSG00000147400), CETN3 (ENSG00000153140), CABP1 (ENSG00000157782), CALM3 (ENSG00000160014), CABP2 (ENSG00000167791), CALML6 (ENSG00000169885), EFCAB3 (ENSG00000172421), EFCAB12 (ENSG00000172771), CABP4 (ENSG00000175544), CETN1 (ENSG00000177143), CALML5 (ENSG00000178372), CALN1 (ENSG00000183166), CALM1 (ENSG00000198668), EFCAB2 (ENSG00000203666), EFCAB7 (ENSG00000203965), EFCAB9 (ENSG00000214360)
Protein
Protein identifiers
Calmodulin-like protein 3 — P27482 (reviewed: P27482)
Alternative names: CaM-like protein, Calmodulin-related protein NB-1
All UniProt accessions (1): P27482
UniProt curated annotations — full annotation on UniProt →
Function. May function as a specific light chain of unconventional myosin-10 (MYO10), also enhances MYO10 translation, possibly by acting as a chaperone for the emerging MYO10 heavy chain protein. May compete with calmodulin by binding, with different affinities, to cellular substrates.
Subunit / interactions. Interacts with MYO10, the interaction is calcium-dependent and essential for MYO10 function in filopodial extension.
Tissue specificity. Expressed in normal mammary, prostate, cervical, and epidermal tissues. It is greatly reduced or undetectable in transformed cells.
Induction. By TGFB1.
Miscellaneous. Binds four calcium ions.
Similarity. Belongs to the calmodulin family.
RefSeq proteins (1): NP_005176* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002048 | EF_hand_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR050230 | CALM/Myosin/TropC-like | Family |
Pfam: PF13499
UniProt features (35 total): binding site 19, helix 7, domain 4, strand 4, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1GGZ | X-RAY DIFFRACTION | 1.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P27482-F1 | 83.17 | 0.16 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (19): 57; 59; 61; 63; 68; 94; 96; 98; 105; 130; 132; 134 …
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 117 (showing top):
JAEGER_METASTASIS_DN, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, CREBP1_Q2, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_RESPONSE_TO_METAL_ION, SMITH_TERT_TARGETS_DN, GOBP_REGULATION_OF_CALCIUM_ION_TRANSMEMBRANE_TRANSPORT, GOBP_MAINTENANCE_OF_LOCATION, GOCC_CENTROSOME, GOBP_SARCOPLASMIC_RETICULUM_CALCIUM_ION_TRANSPORT, KEGG_OLFACTORY_TRANSDUCTION, GOBP_DETECTION_OF_STIMULUS, GOBP_MONOATOMIC_ION_HOMEOSTASIS, GOBP_REGULATION_OF_RELEASE_OF_SEQUESTERED_CALCIUM_ION_INTO_CYTOSOL
GO Biological Process (3): detection of calcium ion (GO:0005513), regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (GO:0010880), calcineurin-mediated signaling (GO:0097720)
GO Molecular Function (3): calcium ion binding (GO:0005509), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (5): cytoplasm (GO:0005737), centrosome (GO:0005813), synaptic vesicle membrane (GO:0030672), myelin sheath (GO:0043209), extracellular exosome (GO:0070062)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| detection of chemical stimulus | 1 |
| response to calcium ion | 1 |
| release of sequestered calcium ion into cytosol by sarcoplasmic reticulum | 1 |
| regulation of release of sequestered calcium ion into cytosol | 1 |
| calcium-mediated signaling | 1 |
| metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| centriole | 1 |
| microtubule organizing center | 1 |
| synaptic vesicle | 1 |
| exocytic vesicle membrane | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
7352 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CALML3 | NOS3 | P29474 | 996 |
| CALML3 | CALD1 | Q05682 | 996 |
| CALML3 | NOS1 | P29475 | 995 |
| CALML3 | MARCKS | P29966 | 995 |
| CALML3 | IQGAP1 | P46940 | 994 |
| CALML3 | MYLK2 | Q9H1R3 | 994 |
| CALML3 | CAMK2A | Q9UQM7 | 994 |
| CALML3 | MYLK | Q15746 | 993 |
| CALML3 | RYR2 | Q92736 | 993 |
| CALML3 | NRGN | Q92686 | 992 |
| CALML3 | CACNA1C | Q13936 | 991 |
| CALML3 | RYR1 | P21817 | 990 |
| CALML3 | TRPV1 | Q8NER1 | 990 |
| CALML3 | CAMK4 | Q16566 | 987 |
| CALML3 | MBP | P02686 | 987 |
| CALML3 | GAP43 | P17677 | 987 |
IntAct
194 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| POC5 | CETN3 | psi-mi:“MI:0914”(association) | 0.920 |
| POC5 | CETN3 | psi-mi:“MI:0914”(association) | 0.770 |
| EIF4E2 | GIGYF1 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CALML3 | MYO10 | psi-mi:“MI:0915”(physical association) | 0.680 |
| CALML3 | MYO10 | psi-mi:“MI:0407”(direct interaction) | 0.680 |
| MYO10 | CALML3 | psi-mi:“MI:0407”(direct interaction) | 0.680 |
| CALML3 | IQCN | psi-mi:“MI:0915”(physical association) | 0.670 |
| IQCN | CALML3 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ANXA9 | PPL | psi-mi:“MI:0914”(association) | 0.660 |
| SINHCAF | TNRC18 | psi-mi:“MI:0914”(association) | 0.640 |
| RAB11B | SH3BP5 | psi-mi:“MI:0914”(association) | 0.640 |
| CAPZA2 | CNOT1 | psi-mi:“MI:0914”(association) | 0.640 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| CALML3 | KIAA1683 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFI | CALML3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALML3 | MFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| IQCB1 | CALML3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALML3 | IQCB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZSCAN12 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (264): KIAA1683 (Two-hybrid), C11orf65 (Two-hybrid), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS), CALML3 (Affinity Capture-MS)
ESM2 similar proteins: A0A125YHX7, A0A125YZN2, J9W034, O15182, O23184, O35648, O74435, O82659, P02597, P02599, P04352, P05434, P05933, P06704, P27163, P27164, P27482, P41041, P41208, P41209, P41210, P43645, P43646, P49258, P53440, P53441, P54213, P60204, P60205, P60206, P61859, P61860, P61861, Q06827, Q12798, Q24956, Q27177, Q27178, Q27179, Q2TBN3
Diamond homologs: A4IF97, B7SNI3, F1SSF9, O14950, O23320, O93409, O96081, O97341, P02597, P02608, P02609, P02610, P02611, P02612, P02613, P04112, P04113, P04464, P04466, P05419, P05932, P05933, P05944, P05963, P07461, P08051, P08052, P08733, P10916, P11118, P11121, P13543, P13832, P13833, P14533, P18061, P18432, P18666, P19105, P19625
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
27 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 26 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
55 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:5525525:TGTCC:T | donor_gain | 0.8700 |
| 10:5525149:AAG:A | acceptor_gain | 0.8100 |
| 10:5525148:CA:C | acceptor_gain | 0.7200 |
| 10:5525149:AA:A | acceptor_gain | 0.7200 |
| 10:5525145:TGACA:T | acceptor_gain | 0.6600 |
| 10:5525070:C:CA | acceptor_gain | 0.6300 |
| 10:5525497:A:AG | donor_gain | 0.5900 |
| 10:5525498:A:G | donor_gain | 0.5900 |
| 10:5525495:TG:T | donor_gain | 0.5800 |
| 10:5525526:GTCCA:G | donor_gain | 0.5700 |
| 10:5525706:A:AG | acceptor_gain | 0.5700 |
| 10:5525082:T:TA | acceptor_gain | 0.4700 |
| 10:5525150:A:G | acceptor_gain | 0.4600 |
| 10:5525149:A:AG | acceptor_gain | 0.4500 |
| 10:5525496:G:A | donor_gain | 0.4400 |
| 10:5525145:T:TA | acceptor_gain | 0.4300 |
| 10:5525690:C:A | acceptor_gain | 0.4100 |
| 10:5525505:G:GT | donor_gain | 0.3900 |
| 10:5525531:A:G | donor_gain | 0.3700 |
| 10:5525679:ATCCC:A | acceptor_gain | 0.3600 |
| 10:5525683:C:A | acceptor_gain | 0.3400 |
| 10:5525124:C:CT | acceptor_gain | 0.3200 |
| 10:5525703:T:A | acceptor_gain | 0.3200 |
| 10:5525086:AT:A | acceptor_gain | 0.3100 |
| 10:5525707:C:G | acceptor_gain | 0.3100 |
| 10:5525532:G:GG | donor_gain | 0.3000 |
| 10:5525581:C:T | donor_gain | 0.3000 |
| 10:5525070:C:G | acceptor_gain | 0.2900 |
| 10:5525714:C:A | acceptor_gain | 0.2800 |
| 10:5525739:T:G | acceptor_gain | 0.2700 |
AlphaMissense
1000 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:5525134:T:C | F17L | 0.993 |
| 10:5525136:C:A | F17L | 0.993 |
| 10:5525136:C:G | F17L | 0.993 |
| 10:5525290:T:C | F69L | 0.991 |
| 10:5525292:C:A | F69L | 0.991 |
| 10:5525292:C:G | F69L | 0.991 |
| 10:5525168:T:A | I28N | 0.988 |
| 10:5525353:T:C | F90L | 0.988 |
| 10:5525355:C:A | F90L | 0.988 |
| 10:5525355:C:G | F90L | 0.988 |
| 10:5525387:T:A | V101D | 0.988 |
| 10:5525231:T:C | L49P | 0.985 |
| 10:5525291:T:C | F69S | 0.985 |
| 10:5525198:G:C | R38P | 0.984 |
| 10:5525402:T:C | L106P | 0.983 |
| 10:5525200:T:C | S39P | 0.982 |
| 10:5525168:T:C | I28T | 0.981 |
| 10:5525362:T:C | F93L | 0.980 |
| 10:5525364:C:A | F93L | 0.980 |
| 10:5525364:C:G | F93L | 0.980 |
| 10:5525143:T:C | F20L | 0.979 |
| 10:5525145:T:A | F20L | 0.979 |
| 10:5525145:T:G | F20L | 0.979 |
| 10:5525192:T:A | V36D | 0.979 |
| 10:5525509:T:C | F142L | 0.979 |
| 10:5525511:T:A | F142L | 0.979 |
| 10:5525511:T:G | F142L | 0.979 |
| 10:5525168:T:G | I28S | 0.978 |
| 10:5525354:T:C | F90S | 0.978 |
| 10:5525291:T:G | F69C | 0.976 |
dbSNP variants (sampled 300 via entrez): RS1000009372 (10:5523959 G>A,C,T), RS1001699674 (10:5527125 G>A), RS1002170992 (10:5526905 TGG>T), RS1002503067 (10:5525777 C>CCTCCCCA), RS1002555584 (10:5525999 T>C), RS1002749925 (10:5526008 G>A), RS1003107383 (10:5525783 C>A,G,T), RS1003683207 (10:5524719 G>A), RS1004143521 (10:5524913 G>A,C,T), RS1004460541 (10:5523066 A>G), RS1005148926 (10:5527250 T>C), RS1005262012 (10:5527083 C>A), RS1006113818 (10:5523917 G>A), RS1006547061 (10:5526542 T>G), RS1006597448 (10:5526387 C>T)
Disease associations
OMIM: gene MIM:114184 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST012046_5 | Fasting insulin | 3.000000e-07 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5169127 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 27,339 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL126 | LINEZOLID | 4 | 27,339 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 5 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.30 | IC50 | 500 | nM | CHEMBL5183837 |
| 5.89 | IC50 | 1300 | nM | CHEMBL5202730 |
| 5.70 | IC50 | 2000 | nM | CHEMBL5189056 |
| 5.03 | IC50 | 9300 | nM | LINEZOLID |
PubChem BioAssay actives
4 with measured affinity, of 5 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (5R)-3-[3-fluoro-4-[4-(1-methylpyridin-1-ium-4-yl)phenyl]phenyl]-5-(hydroxymethyl)-1,3-oxazolidin-2-one chloride | 1852696: Inhibition of CALML3 (unknown origin) assessed as apparent protein translation inhibition constant incubated for 5 hrs by SDS gel electrophoresis | ic50 | 0.5000 | uM |
| (5R)-3-(3-fluoro-4-pyridin-4-ylphenyl)-5-(hydroxymethyl)-1,3-oxazolidin-2-one | 1852696: Inhibition of CALML3 (unknown origin) assessed as apparent protein translation inhibition constant incubated for 5 hrs by SDS gel electrophoresis | ic50 | 1.3000 | uM |
| (5R)-3-[3-fluoro-4-[3-(hydroxymethyl)phenyl]phenyl]-5-(hydroxymethyl)-1,3-oxazolidin-2-one | 1852696: Inhibition of CALML3 (unknown origin) assessed as apparent protein translation inhibition constant incubated for 5 hrs by SDS gel electrophoresis | ic50 | 2.0000 | uM |
| Linezolid | 1852696: Inhibition of CALML3 (unknown origin) assessed as apparent protein translation inhibition constant incubated for 5 hrs by SDS gel electrophoresis | ic50 | 9.3000 | uM |
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | increases abundance, increases expression, decreases expression | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation, affects methylation | 2 |
| Tobacco Smoke Pollution | increases expression, affects expression, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| hydroquinone | decreases expression | 1 |
| seocalcitol | increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Cadmium | increases abundance, decreases expression | 1 |
| Calcitriol | increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Smoke | increases expression, increases abundance | 1 |
| Valproic Acid | increases methylation | 1 |
| Isotretinoin | decreases expression | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
| Simvastatin | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5107418 | Binding | Inhibition of CALML3 (unknown origin) assessed as apparent protein translation inhibition constant incubated for 5 hrs by SDS gel electrophoresis | Structure-Uptake Relationship Studies of Oxazolidinones in Gram-Negative ESKAPE Pathogens. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.