CAMK2B
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Also known as CAM2CAMK2CaMKIIβ
Summary
CAMK2B (calcium/calmodulin dependent protein kinase II beta, HGNC:1461) is a protein-coding gene on chromosome 7p13, encoding Calcium/calmodulin-dependent protein kinase type II subunit beta (Q13554). Calcium/calmodulin-dependent protein kinase that functions autonomously after Ca(2+)/calmodulin-binding and autophosphorylation, and is involved in dendritic spine and synapse formation, neuronal plasticity and regulation of sarcoplasmic reticulum Ca(2+) transport in skeletal mu….
The product of this gene belongs to the serine/threonine protein kinase family and to the Ca(2+)/calmodulin-dependent protein kinase subfamily. Calcium signaling is crucial for several aspects of plasticity at glutamatergic synapses. In mammalian cells, the enzyme is composed of four different chains: alpha, beta, gamma, and delta. The product of this gene is a beta chain. It is possible that distinct isoforms of this chain have different cellular localizations and interact differently with calmodulin. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 816 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability, autosomal dominant 40 (Definitive, GenCC) — +2 more curated relationships
- GWAS associations: 6
- Clinical variants (ClinVar): 944 total — 8 pathogenic, 8 likely-pathogenic
- Phenotypes (HPO): 64
- Druggable target: yes — 25 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001220
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1461 |
| Approved symbol | CAMK2B |
| Name | calcium/calmodulin dependent protein kinase II beta |
| Location | 7p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CAM2, CAMK2, CaMKIIβ |
| Ensembl gene | ENSG00000058404 |
| Ensembl biotype | protein_coding |
| OMIM | 607707 |
| Entrez | 816 |
Gene structure
Transcript identifiers
Ensembl transcripts: 127 — 105 protein_coding, 10 protein_coding_CDS_not_defined, 9 nonsense_mediated_decay, 3 retained_intron
ENST00000258682, ENST00000346990, ENST00000347193, ENST00000350811, ENST00000353185, ENST00000353625, ENST00000358707, ENST00000395747, ENST00000395749, ENST00000415369, ENST00000421607, ENST00000424197, ENST00000425809, ENST00000427209, ENST00000433930, ENST00000440254, ENST00000462128, ENST00000466584, ENST00000470984, ENST00000484972, ENST00000489429, ENST00000495819, ENST00000497127, ENST00000497584, ENST00000523845, ENST00000700233, ENST00000700234, ENST00000700235, ENST00000700236, ENST00000700237, ENST00000700238, ENST00000700239, ENST00000700240, ENST00000700241, ENST00000700242, ENST00000700243, ENST00000700244, ENST00000700245, ENST00000700246, ENST00000700283, ENST00000700284, ENST00000700285, ENST00000700286, ENST00000700287, ENST00000700288, ENST00000700289, ENST00000700290, ENST00000700291, ENST00000700292, ENST00000896817, ENST00000896818, ENST00000896819, ENST00000896820, ENST00000896821, ENST00000896822, ENST00000896823, ENST00000896824, ENST00000896825, ENST00000896826, ENST00000896827, ENST00000896828, ENST00000896829, ENST00000896830, ENST00000896831, ENST00000896832, ENST00000896833, ENST00000896834, ENST00000896835, ENST00000896836, ENST00000896837, ENST00000896838, ENST00000896839, ENST00000896840, ENST00000896841, ENST00000896842, ENST00000896843, ENST00000896844, ENST00000896845, ENST00000896846, ENST00000896847, ENST00000943311, ENST00000943312, ENST00000943313, ENST00000943314, ENST00000943315, ENST00000943316, ENST00000943317, ENST00000943318, ENST00000943319, ENST00000943320, ENST00000943321, ENST00000943322, ENST00000943323, ENST00000943324, ENST00000943325, ENST00000943326, ENST00000943327, ENST00000943328, ENST00000943329, ENST00000943330, ENST00000943331, ENST00000943332, ENST00000943333, ENST00000943334, ENST00000943335, ENST00000943336, ENST00000943337, ENST00000943338, ENST00000943339, ENST00000943340, ENST00000943341, ENST00000943342, ENST00000943343, ENST00000943344, ENST00000943345, ENST00000943346, ENST00000943347, ENST00000943348, ENST00000943349, ENST00000943350, ENST00000943351, ENST00000943352, ENST00000943353, ENST00000943354, ENST00000943355, ENST00000943356, ENST00000943357
RefSeq mRNA: 9 — MANE Select: NM_001220
NM_001220, NM_001293170, NM_172078, NM_172079, NM_172080, NM_172081, NM_172082, NM_172083, NM_172084
CCDS: CCDS43573, CCDS5483, CCDS5484, CCDS5485, CCDS5486, CCDS5487, CCDS5488, CCDS5489
Canonical transcript exons
ENST00000395749 — 24 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000522115 | 44229388 | 44229501 |
| ENSE00001522695 | 44217154 | 44219522 |
| ENSE00001522700 | 44325357 | 44325594 |
| ENSE00001617876 | 44228796 | 44228924 |
| ENSE00003459249 | 44243425 | 44243527 |
| ENSE00003467097 | 44220826 | 44220901 |
| ENSE00003493389 | 44254542 | 44254607 |
| ENSE00003497281 | 44220060 | 44220294 |
| ENSE00003503497 | 44234390 | 44234461 |
| ENSE00003517138 | 44263005 | 44263064 |
| ENSE00003519113 | 44232822 | 44232866 |
| ENSE00003523373 | 44247120 | 44247192 |
| ENSE00003530079 | 44239589 | 44239663 |
| ENSE00003588775 | 44243250 | 44243333 |
| ENSE00003611913 | 44242560 | 44242654 |
| ENSE00003616190 | 44231006 | 44231054 |
| ENSE00003618995 | 44220616 | 44220710 |
| ENSE00003638925 | 44241700 | 44241783 |
| ENSE00003639508 | 44258872 | 44258926 |
| ENSE00003653672 | 44234639 | 44234676 |
| ENSE00003673431 | 44240707 | 44240749 |
| ENSE00003689662 | 44226516 | 44226644 |
| ENSE00003979433 | 44242218 | 44242340 |
| ENSE00003979459 | 44284131 | 44284225 |
Expression profiles
Bgee: expression breadth ubiquitous, 233 present calls, max score 99.36.
FANTOM5 (CAGE): breadth broad, TPM avg 10.0089 / max 602.8518, expressed in 539 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 83867 | 7.6325 | 486 |
| 83868 | 1.2388 | 206 |
| 83857 | 0.3732 | 84 |
| 83858 | 0.2906 | 88 |
| 83861 | 0.2822 | 27 |
| 83863 | 0.0872 | 45 |
| 83862 | 0.0483 | 10 |
| 83869 | 0.0313 | 12 |
| 83865 | 0.0246 | 6 |
Top tissues by expression
296 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellar cortex | UBERON:0002129 | 99.36 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.36 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.30 | gold quality |
| cerebellum | UBERON:0002037 | 99.25 | gold quality |
| cerebellar vermis | UBERON:0004720 | 99.07 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 98.65 | gold quality |
| paraflocculus | UBERON:0005351 | 98.39 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.36 | gold quality |
| parietal lobe | UBERON:0001872 | 98.21 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 98.16 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 98.15 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.13 | gold quality |
| putamen | UBERON:0001874 | 98.12 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.11 | gold quality |
| caudate nucleus | UBERON:0001873 | 98.10 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 98.07 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 97.99 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.86 | gold quality |
| frontal cortex | UBERON:0001870 | 97.79 | gold quality |
| frontal lobe | UBERON:0016525 | 97.79 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 97.78 | gold quality |
| Ammon’s horn | UBERON:0001954 | 97.67 | gold quality |
| cingulate cortex | UBERON:0003027 | 97.58 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.55 | gold quality |
| pons | UBERON:0000988 | 97.52 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 97.30 | gold quality |
| frontal pole | UBERON:0002795 | 97.28 | gold quality |
| neocortex | UBERON:0001950 | 97.21 | gold quality |
| apex of heart | UBERON:0002098 | 97.21 | gold quality |
| telencephalon | UBERON:0001893 | 97.18 | gold quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-137537 | yes | 1510.19 |
| E-MTAB-7316 | yes | 1393.86 |
| E-HCAD-35 | yes | 39.75 |
| E-GEOD-84465 | yes | 7.40 |
| E-GEOD-83139 | yes | 3.74 |
| E-MTAB-6058 | no | 221.14 |
| E-ANND-3 | no | 3.53 |
| E-HCAD-5 | no | 2.30 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
62 targeting CAMK2B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-544A | 99.84 | 68.66 | 1965 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-651-5P | 99.64 | 68.49 | 1104 |
| HSA-MIR-488-3P | 99.61 | 68.79 | 1731 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-3136-3P | 99.57 | 66.59 | 781 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 25)
- mRNA levels are elevated in the frontal cortex in schizophrenia. (PMID:11042361)
- Four distinct isoforms of CAMKII were isolated. Two of them were characterized as CaMKII alpha and beta subunits.expression is developmentally regulated in both human fetal and adult brain to different degrees (PMID:11710563)
- role in cell communication (PMID:11889801)
- CaMK II regulates c-FLIP expression and phosphorylation, thus modulating Fas-mediated signaling in glioma cells (PMID:12496285)
- exercise increases the activity of CaMKII in skeletal muscle, suggesting that it may have a role in regulating skeletal muscle function and metabolism during exercise in humans (PMID:14565989)
- measured differences in CaMKII binding affinities for CaM play a minor role in the autophosphorylation of the enzyme, largely dictated by autophosphorylation rate for alpha, beta, gamma and delta isoforms (PMID:14722083)
- the function of CaMK II is essential for PAF-induced macrophage priming, while CaMK IV is not specific for priming by PAF and appears to have a direct link in TLR4-mediated events (PMID:15665723)
- presence of a CaMKIIbeta isoform that can target the SR presumably via its membrane anchor alphaKAP defines a previously unrecognized Ca2+/CaM regulatory system in myocardium (PMID:15792370)
- thrombomodulin induces Ca2+ signals and nitric oxide synthesis through EGFR and calmodulin kinase II (PMID:16126727)
- The expression of CaMKII beta was significantly elevated in schizophrenia and in depression. (PMID:16247765)
- expression significantly elevated in frontal cortex in schizophrenia & depression; because CaMKIIbeta influences expression of neuroreceptors & neural outgrowth & pruning, altered expression in schizophrenia or depression may contribute to these diseases (PMID:16247765)
- regulated degradation of liprinalpha1 is important for proper LAR receptor distribution, and could provide a mechanism for localized control of dendrite and synapse morphogenesis by activity and CaMKII. (PMID:17419996)
- These FLIM versions of Camui could be useful for elucidating the function of CaMKII both in vitro and in vivo. (PMID:18302935)
- The novel cGMP/PKG/ROS/calmodulin/CaMKII signaling pathway may regulate cardiomyocyte excitability by opening K(ATP) channels and contribute to cardiac protection against ischemia-reperfusion injury. (PMID:21479273)
- Characterization of a central Ca2+/calmodulin-dependent protein kinase IIalpha/beta binding domain in densin that selectively modulates glutamate receptor subunit phosphorylation. (PMID:21610080)
- Promoter methylations of CAMK2B and ARFGEF1 are novel epigenetic markers identified in breast cancer cell lines. (PMID:21871176)
- Study presents the crystal structure of an autoinhibited full-length human CaMKII holoenzyme, revealing an unexpected compact arrangement of kinase domains docked against a central hub, with the calmodulin-binding sites completely inaccessible. (PMID:21884935)
- beta-carotene reverses the IL-1beta-mediated reduction in paraoxonase-1 expression via induction of the CaMKKII pathway in human endothelial cells (PMID:22750393)
- Due to similarity of structure variations, we suggest that these compounds may have an effect on beta-CaMKII and that sengesterone may have a similar efficacy as the control. (PMID:25045698)
- TGFbeta elevated the expression of CamK IIbeta and CamK IIdelta, while siRNA silencing of those two subtypes significantly reduced TGFbeta-mediated expression of collagen A1 and fibronectin 1. (PMID:28130256)
- The importance of CAMK2A and CAMK2B and their auto-phosphorylation in human brain function. (PMID:29100089)
- CaMKII regulates KCNQ1 at S484 during sustained beta-AR stimulation to inhibit IKs. The ability of CaMKII to inhibit IKs may contribute to arrhythmogenicity during HF. (PMID:29410121)
- Flexible linkers in CaMKII control the balance between activating and inhibitory autophosphorylation. (PMID:32149607)
- CaMKIIbeta in Neuronal Development and Plasticity: An Emerging Candidate in Brain Diseases. (PMID:33019657)
- Understanding the pathogenetic mechanisms underlying altered neuronal function associated with CAMK2B mutations. (PMID:37391113)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | camk2b1 | ENSDARG00000011065 |
| danio_rerio | camk2b2 | ENSDARG00000100089 |
| mus_musculus | Camk2b | ENSMUSG00000057897 |
| rattus_norvegicus | Camk2b | ENSRNOG00000052080 |
Paralogs (22): CAMKK1 (ENSG00000004660), CAMK1G (ENSG00000008118), CAMK2A (ENSG00000070808), MYLK2 (ENSG00000101306), CAMKK2 (ENSG00000110931), STK11 (ENSG00000118046), STK33 (ENSG00000130413), PNCK (ENSG00000130822), DCLK1 (ENSG00000133083), CAMK1 (ENSG00000134072), MYLK3 (ENSG00000140795), CAMK2D (ENSG00000145349), MYLK4 (ENSG00000145949), PSKH2 (ENSG00000147613), CAMK2G (ENSG00000148660), PHKG2 (ENSG00000156873), PSKH1 (ENSG00000159792), DCLK3 (ENSG00000163673), CAMKV (ENSG00000164076), PHKG1 (ENSG00000164776), DCLK2 (ENSG00000170390), CAMK1D (ENSG00000183049)
Protein
Protein identifiers
Calcium/calmodulin-dependent protein kinase type II subunit beta — Q13554 (reviewed: Q13554)
All UniProt accessions (26): Q13554, A0A8V8TPG1, A0A8V8TPG6, A0A8V8TPH1, A0A8V8TPJ7, A0A8V8TPW6, A0A8V8TPX2, A0A8V8TPX9, A0A8V8TQ05, A0A8V8TQ06, A0A8V8TQ12, A0A8V8TQ13, A0A8V8TQ39, A0A8V8TQR5, A0A8V8TQS2, A0A8V8TQU0, A0A8V8TQU4, A0A8V8TR22, A0A8V8TR26, A0A8V8TR45, A4D2J9, E7EQE4, E7ERS6, E9PBE8, H7BXS4, H7BZC6
UniProt curated annotations — full annotation on UniProt →
Function. Calcium/calmodulin-dependent protein kinase that functions autonomously after Ca(2+)/calmodulin-binding and autophosphorylation, and is involved in dendritic spine and synapse formation, neuronal plasticity and regulation of sarcoplasmic reticulum Ca(2+) transport in skeletal muscle. In neurons, plays an essential structural role in the reorganization of the actin cytoskeleton during plasticity by binding and bundling actin filaments in a kinase-independent manner. This structural function is required for correct targeting of CaMK2A, which acts downstream of NMDAR to promote dendritic spine and synapse formation and maintain synaptic plasticity which enables long-term potentiation (LTP) and hippocampus-dependent learning. In developing hippocampal neurons, promotes arborization of the dendritic tree and in mature neurons, promotes dendritic remodeling. Also regulates the migration of developing neurons. Participates in the modulation of skeletal muscle function in response to exercise. In slow-twitch muscles, is involved in regulation of sarcoplasmic reticulum (SR) Ca(2+) transport and in fast-twitch muscle participates in the control of Ca(2+) release from the SR through phosphorylation of triadin, a ryanodine receptor-coupling factor, and phospholamban (PLN/PLB), an endogenous inhibitor of SERCA2A/ATP2A2. In response to interferon-gamma (IFN-gamma) stimulation, catalyzes phosphorylation of STAT1, stimulating the JAK-STAT signaling pathway. Phosphorylates reticulophagy regulator RETREG1 at ‘Ser-151’ under endoplasmic reticulum stress conditions which enhances RETREG1 oligomerization and its membrane scission and reticulophagy activity.
Subunit / interactions. CAMK2 is composed of 4 different chains: alpha (CAMK2A), beta (CAMK2B), gamma (CAMK2G), and delta (CAMK2D). The different isoforms assemble into homo- or heteromultimeric holoenzymes composed of 12 subunits with two hexameric rings stacked one on top of the other (PubMed:14722083, Ref.20). Interacts with SYNGAP1 and CAMK2N2. Interacts with MPDZ. Interacts with FOXO3. Interacts (when in a kinase inactive state not associated with calmodulin) with ARC; leading to target ARC to inactive synapses. Interacts with CAMK2N1; this interaction requires CAMK2B activation by Ca(2+).
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Sarcoplasmic reticulum membrane. Synapse.
Tissue specificity. Widely expressed. Expressed in adult and fetal brain. Expression is slightly lower in fetal brain. Expressed in skeletal muscle.
Post-translational modifications. Autophosphorylation of Thr-287 following activation by Ca(2+)/calmodulin. Phosphorylation of Thr-287 locks the kinase into an activated state.
Disease relevance. Intellectual developmental disorder, autosomal dominant 54 (MRD54) [MIM:617799] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Activated by Ca(2+)/calmodulin. Binding of calmodulin results in conformational change that relieves intrasteric autoinhibition and allows autophosphorylation of Thr-287 which turns the kinase in a constitutively active form and confers to the kinase a Ca(2+)-independent activity.
Domain organisation. The CAMK2 protein kinases contain a unique C-terminal subunit association domain responsible for oligomerization.
Induction. Activity is induced in skeletal muscle during exercise.
Similarity. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13554-1 | 4 | yes |
| Q13554-2 | 1, Beta | |
| Q13554-3 | 2, Beta1, Beta’E | |
| Q13554-4 | 3, Beta2 | |
| Q13554-5 | 5, Beta4, BetaE | |
| Q13554-6 | 6, Beta6 | |
| Q13554-7 | 7, Beta7 | |
| Q13554-8 | 8 |
RefSeq proteins (9): NP_001211, NP_001280099, NP_742075, NP_742076, NP_742077, NP_742078, NP_742079, NP_742080, NP_742081 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR013543 | Ca/CaM-dep_prot_kinase-assoc | Domain |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR032710 | NTF2-like_dom_sf | Homologous_superfamily |
Pfam: PF00069, PF08332
Enzyme classification (BRENDA):
- EC 2.7.11.17 — Ca2+/calmodulin-dependent protein kinase (BRENDA: 38 organisms, 300 substrates, 137 inhibitors, 35 Km, 17 kcat entries)
Substrate kinetics (BRENDA)
12 substrates with measured Km, best-characterized 12. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0071–178.29 | 13 |
| BIOTINYLATED THR-ARG-SER-ALA-ILE-ARG-ARG-ALA-SER | 0.0064–0.0158 | 4 |
| GST-TAGGED GLUN2A | 6.05–11.75 | 2 |
| GST-TAGGED GLUN2B | 0.35–5.93 | 2 |
| MAP2 | 0.0007–0.0008 | 2 |
| CALDESMON | 0.0049 | 1 |
| HISTONE IIIS | 0.0445 | 1 |
| LYS-LYS-ALA-LEU-ARG-ARG-GLN-GLU-ALA-VAL-ASP-ALA- | 0.063 | 1 |
| MICROTUBULE ASSOCIATED PROTEIN 2 | 0.0016 | 1 |
| SYNTIDE-2 | 0.02 | 1 |
| SYNTIDE-2 PEPTIDE | 0.0221 | 1 |
| MYELIN BASIC PROTEIN | — | 0 |
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (78 total): helix 18, strand 15, modified residue 9, splice variant 9, sequence variant 9, compositionally biased region 4, region of interest 3, sequence conflict 3, turn 3, binding site 2, chain 1, domain 1, active site 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3BHH | X-RAY DIFFRACTION | 2.4 |
| 7URY | X-RAY DIFFRACTION | 2.64 |
| 7URW | X-RAY DIFFRACTION | 3.11 |
| 7URZ | X-RAY DIFFRACTION | 3.45 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13554-F1 | 72.35 | 0.46 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 136 (proton acceptor)
Ligand- & substrate-binding residues (2): 20–28; 43
Post-translational modifications (9): 17, 287, 306, 307, 367, 394, 397, 400, 401
Function
Pathways and Gene Ontology
Reactome pathways
61 pathways
| ID | Pathway |
|---|---|
| R-HSA-111932 | CaMK IV-mediated phosphorylation of CREB |
| R-HSA-3371571 | HSF1-dependent transactivation |
| R-HSA-399719 | Trafficking of AMPA receptors |
| R-HSA-438066 | Unblocking of NMDA receptors, glutamate binding and activation |
| R-HSA-442729 | CREB1 phosphorylation through the activation of CaMKII/CaMKK/CaMKIV cascasde |
| R-HSA-442982 | Ras activation upon Ca2+ influx through NMDA receptor |
| R-HSA-5576892 | Phase 0 - rapid depolarisation |
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-5673000 | RAF activation |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6802946 | Signaling by moderate kinase activity BRAF mutants |
| R-HSA-6802952 | Signaling by BRAF and RAF1 fusions |
| R-HSA-6802955 | Paradoxical activation of RAF signaling by kinase inactive BRAF |
| R-HSA-877300 | Interferon gamma signaling |
| R-HSA-9022692 | Regulation of MECP2 expression and activity |
| R-HSA-936837 | Ion transport by P-type ATPases |
| R-HSA-9609736 | Assembly and cell surface presentation of NMDA receptors |
| R-HSA-9617324 | Negative regulation of NMDA receptor-mediated neuronal transmission |
| R-HSA-9620244 | Long-term potentiation |
| R-HSA-9649948 | Signaling downstream of RAS mutants |
| R-HSA-9656223 | Signaling by RAF1 mutants |
| R-HSA-9918481 | Dengue Virus-Host Interactions |
| R-HSA-111885 | Opioid Signalling |
| R-HSA-111933 | Calmodulin induced events |
| R-HSA-111996 | Ca-dependent events |
| R-HSA-111997 | CaM pathway |
| R-HSA-112040 | G-protein mediated events |
| R-HSA-112043 | PLC beta mediated events |
| R-HSA-112314 | Neurotransmitter receptors and postsynaptic signal transmission |
| R-HSA-112315 | Transmission across Chemical Synapses |
MSigDB gene sets: 485 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, MORF_RAGE, GOBP_DENDRITE_DEVELOPMENT, BENPORATH_ES_WITH_H3K27ME3, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, REACTOME_CREB1_PHOSPHORYLATION_THROUGH_THE_ACTIVATION_OF_CAMKII_CAMKK_CAMKIV_CASCASDE, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, RORA1_01, GOBP_REGULATION_OF_NEURONAL_SYNAPTIC_PLASTICITY, GOBP_SKELETAL_MUSCLE_ADAPTATION, GOBP_REGULATION_OF_DENDRITE_MORPHOGENESIS, GOBP_DENDRITIC_SPINE_DEVELOPMENT, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOBP_NEUROGENESIS
GO Biological Process (17): protein phosphorylation (GO:0006468), signal transduction (GO:0007165), nervous system development (GO:0007399), positive regulation of neuron projection development (GO:0010976), regulation of skeletal muscle adaptation (GO:0014733), cell differentiation (GO:0030154), protein autophosphorylation (GO:0046777), regulation of neuronal synaptic plasticity (GO:0048168), regulation of long-term neuronal synaptic plasticity (GO:0048169), regulation of synapse structural plasticity (GO:0051823), regulation of calcium ion transport (GO:0051924), long-term synaptic potentiation (GO:0060291), regulation of dendritic spine development (GO:0060998), positive regulation of dendritic spine morphogenesis (GO:0061003), positive regulation of synapse maturation (GO:0090129), regulation of protein localization to plasma membrane (GO:1903076), regulation of neuron migration (GO:2001222)
GO Molecular Function (13): actin binding (GO:0003779), calcium/calmodulin-dependent protein kinase activity (GO:0004683), calmodulin binding (GO:0005516), ATP binding (GO:0005524), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (13): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), centrosome (GO:0005813), cytosol (GO:0005829), calcium- and calmodulin-dependent protein kinase complex (GO:0005954), postsynaptic density (GO:0014069), endocytic vesicle membrane (GO:0030666), sarcoplasmic reticulum membrane (GO:0033017), neuron projection (GO:0043005), cytoskeleton (GO:0005856), membrane (GO:0016020), sarcoplasmic reticulum (GO:0016529), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-14 pathways:
| Category | Pathways |
|---|---|
| Activation of NMDA receptors and postsynaptic events | 3 |
| Oncogenic MAPK signaling | 3 |
| Post NMDA receptor activation events | 2 |
| Cardiac conduction | 2 |
| Calmodulin induced events | 1 |
| Cellular response to heat stress | 1 |
| Glutamate binding, activation of AMPA receptors and synaptic plasticity | 1 |
| CREB1 phosphorylation through NMDA receptor-mediated activation of RAS signaling | 1 |
| RAF/MAP kinase cascade | 1 |
| MAPK1/MAPK3 signaling | 1 |
| Interferon Signaling | 1 |
| Transcriptional Regulation by MECP2 | 1 |
| Ion channel transport | 1 |
| Signaling by RAS mutants | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| regulation of synaptic plasticity | 2 |
| protein binding | 2 |
| protein kinase activity | 2 |
| bounding membrane of organelle | 2 |
| phosphorylation | 1 |
| protein modification process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| system development | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| positive regulation of cell projection organization | 1 |
| skeletal muscle adaptation | 1 |
| regulation of muscle adaptation | 1 |
| cellular developmental process | 1 |
| protein phosphorylation | 1 |
| regulation of neuronal synaptic plasticity | 1 |
| regulation of synapse organization | 1 |
| calcium ion transport | 1 |
| regulation of metal ion transport | 1 |
| positive regulation of synaptic transmission | 1 |
| regulation of developmental process | 1 |
| dendritic spine development | 1 |
| positive regulation of neuron projection development | 1 |
| positive regulation of dendrite morphogenesis | 1 |
| dendritic spine morphogenesis | 1 |
| positive regulation of dendritic spine development | 1 |
| regulation of dendritic spine morphogenesis | 1 |
| positive regulation of developmental process | 1 |
| positive regulation of cellular component organization | 1 |
| synapse maturation | 1 |
| regulation of synapse maturation | 1 |
| protein localization to plasma membrane | 1 |
| regulation of protein localization to cell periphery | 1 |
| regulation of protein localization to membrane | 1 |
| neuron migration | 1 |
Protein interactions and networks
STRING
2298 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CAMK2B | CAMK2A | Q9UQM7 | 901 |
| CAMK2B | CALM1 | P02593 | 817 |
| CAMK2B | CAMK2N2 | Q96S95 | 816 |
| CAMK2B | CALML5 | Q9NZT1 | 806 |
| CAMK2B | CALML3 | P27482 | 805 |
| CAMK2B | CALML4 | Q96GE6 | 796 |
| CAMK2B | CALML6 | Q8TD86 | 792 |
| CAMK2B | GRIN2B | Q13224 | 770 |
| CAMK2B | ARC | Q7LC44 | 738 |
| CAMK2B | DLG4 | P78352 | 682 |
| CAMK2B | GRIA3 | P42263 | 645 |
| CAMK2B | LRRC7 | Q96NW7 | 637 |
| CAMK2B | SYNGAP1 | Q96PV0 | 582 |
| CAMK2B | GRIA1 | P42261 | 526 |
| CAMK2B | SYT1 | P21579 | 496 |
IntAct
178 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CAMK2B | CAMK2A | psi-mi:“MI:0915”(physical association) | 0.850 |
| MCM5 | MCM3 | psi-mi:“MI:0914”(association) | 0.850 |
| CAMK2B | CAMK2D | psi-mi:“MI:0407”(direct interaction) | 0.820 |
| CAMK2B | CAMK2D | psi-mi:“MI:0915”(physical association) | 0.820 |
| PKN3 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.680 |
| AP5B1 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.670 |
| CAMK2B | AP5B1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNF397 | ZNF24 | psi-mi:“MI:0914”(association) | 0.640 |
| PRKAG2 | PRKAA2 | psi-mi:“MI:0914”(association) | 0.640 |
| CALM | SOX9 | psi-mi:“MI:0407”(direct interaction) | 0.610 |
| CAMK2B | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.590 |
| CAMK2B | CAMK2B | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| CAMK2B | CALM1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 | |
| CAMK2B | ACOT7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | RBFOX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | KRTAP10-11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | RAP2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | RPL11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | KRTAP19-5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP19-7 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPRYD7 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| FAM171A2 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| TTC5 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| RBPMS | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| PHKB | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
| CAMK2B | POP5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MED18 | CAMK2B | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (203): CAMK2B (Two-hybrid), PHKB (Two-hybrid), RAP2B (Two-hybrid), RPL11 (Two-hybrid), MAD2L2 (Two-hybrid), MORF4L1 (Two-hybrid), RBPMS (Two-hybrid), ACOT7 (Two-hybrid), RBFOX2 (Two-hybrid), POP5 (Two-hybrid), MED18 (Two-hybrid), SPRYD7 (Two-hybrid), SEMA4G (Two-hybrid), MRPL11 (Two-hybrid), AP5B1 (Two-hybrid)
ESM2 similar proteins: A2RSY6, A2YNY4, A2YXJ7, A4QNR3, A5D7S3, A7P514, A8KBY2, A9UL13, A9UL14, B1ABR6, B1ABS0, B4R4H1, B5DUH6, B9GLX8, B9SVG9, D3ZYB7, F1R3W0, F7BLM1, O75460, O80443, O82677, P0CG38, P97358, Q08995, Q13554, Q29S07, Q2ABE5, Q32N22, Q3E7X8, Q3LXA7, Q3UAW9, Q496Z9, Q4JF75, Q4R318, Q4V8D6, Q66IW8, Q66WV0, Q6DDH2, Q84QM3, Q8C5W4
Diamond homologs: A0A509AFG4, A0A509AQE6, A0A5K1K8H0, A2ZVI7, A5A7I7, A5A7I8, B9FKW9, O15865, O49717, O80673, P08413, P15791, P28582, P28583, P28652, P49101, P53681, P53682, P53683, P53684, P62345, P93759, Q06850, Q0D715, Q0DYK7, Q10KY3, Q13554, Q13557, Q14012, Q1PE17, Q1PFH8, Q2HJF7, Q2QQR2, Q2QVG8, Q2QX45, Q2QY37, Q2RAV0, Q38868, Q38869, Q38870
SIGNOR signaling
27 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CAMK2B | up-regulates | PRKAA1 | phosphorylation |
| CAMK2B | up-regulates | STAT1 | phosphorylation |
| CAMK2B | down-regulates | GSK3A | phosphorylation |
| CAMK2B | down-regulates | CTNNB1 | phosphorylation |
| CAMK2B | up-regulates | AMPK | phosphorylation |
| CAMK2B | “up-regulates activity” | CYLD | phosphorylation |
| CAMK2B | up-regulates | CYLD | phosphorylation |
| CAMK2B | “up-regulates activity” | SCN5A | phosphorylation |
| CAMK2B | “up-regulates activity” | SCN8A | phosphorylation |
| CAMK2B | “down-regulates quantity by destabilization” | GABBR1 | phosphorylation |
| CAMK2B | down-regulates | STMN1 | phosphorylation |
| CAMK2B | “up-regulates activity” | CAMK2B | phosphorylation |
| CAMK2B | “down-regulates activity” | ETS1 | phosphorylation |
| CAMK2B | “up-regulates activity” | GRIN2B | phosphorylation |
| CAMK2B | unknown | PLCB3 | phosphorylation |
| CAMK2B | “up-regulates activity” | RETREG1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 161 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| HSF1-dependent transactivation | 6 | 18.5× | 4e-04 |
| Phase 0 - rapid depolarisation | 5 | 16.8× | 1e-03 |
| Transcriptional Regulation by MECP2 | 5 | 15.4× | 2e-03 |
| Post NMDA receptor activation events | 6 | 11.9× | 1e-03 |
| Activation of NMDA receptors and postsynaptic events | 6 | 10.7× | 2e-03 |
| Signaling by BRAF and RAF1 fusions | 5 | 8.3× | 8e-03 |
| Transmission across Chemical Synapses | 7 | 5.2× | 9e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion | 5 | 23.9× | 5e-04 |
| regulation of cytokinesis | 5 | 14.9× | 2e-03 |
| G2/M transition of mitotic cell cycle | 6 | 13.3× | 9e-04 |
| long-term synaptic potentiation | 6 | 11.9× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
944 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 8 |
| Uncertain significance | 342 |
| Likely benign | 477 |
| Benign | 42 |
Top pathogenic / likely-pathogenic (16)
| Variant ID | HGVS | Classification |
|---|---|---|
| 430920 | NM_001220.5(CAMK2B):c.85C>T (p.Arg29Ter) | Pathogenic |
| 430921 | NM_001220.5(CAMK2B):c.328G>A (p.Glu110Lys) | Pathogenic |
| 430923 | NM_001220.5(CAMK2B):c.709G>A (p.Glu237Lys) | Pathogenic |
| 430924 | NM_001220.5(CAMK2B):c.820-1G>A | Pathogenic |
| 430926 | NM_001220.5(CAMK2B):c.903+1G>A | Pathogenic |
| 4795448 | NM_001220.5(CAMK2B):c.778C>G (p.Arg260Gly) | Pathogenic |
| 560179 | NM_001220.5(CAMK2B):c.638C>T (p.Pro213Leu) | Pathogenic |
| 560180 | NM_001220.5(CAMK2B):c.852A>T (p.Arg284Ser) | Pathogenic |
| 1275799 | NM_001220.5(CAMK2B):c.903+2T>C | Likely pathogenic |
| 2023959 | NM_001220.5(CAMK2B):c.441G>C (p.Lys147Asn) | Likely pathogenic |
| 2499040 | NM_001220.5(CAMK2B):c.1059+2T>C | Likely pathogenic |
| 2506486 | NM_001220.5(CAMK2B):c.601+1G>A | Likely pathogenic |
| 3769908 | NM_001220.5(CAMK2B):c.895A>G (p.Lys299Glu) | Likely pathogenic |
| 4819025 | NM_001220.5(CAMK2B):c.1834G>T (p.Glu612Ter) | Likely pathogenic |
| 4849224 | NM_001220.5(CAMK2B):c.596C>T (p.Ala199Val) | Likely pathogenic |
| 981290 | NM_001220.5(CAMK2B):c.885_902dup (p.Asn295_Leu300dup) | Likely pathogenic |
SpliceAI
6114 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:44211021:A:AG | acceptor_gain | 1.0000 |
| 7:44211022:G:GG | acceptor_gain | 1.0000 |
| 7:44211022:GCAC:G | acceptor_gain | 1.0000 |
| 7:44211125:G:GG | donor_gain | 1.0000 |
| 7:44212245:A:G | acceptor_gain | 1.0000 |
| 7:44220055:CTCA:C | donor_loss | 1.0000 |
| 7:44220056:TCA:T | donor_loss | 1.0000 |
| 7:44220057:CAC:C | donor_loss | 1.0000 |
| 7:44220058:A:AC | donor_gain | 1.0000 |
| 7:44220058:A:AT | donor_loss | 1.0000 |
| 7:44220058:ACCTT:A | donor_gain | 1.0000 |
| 7:44220059:C:CC | donor_gain | 1.0000 |
| 7:44220059:C:G | donor_loss | 1.0000 |
| 7:44220059:CCTT:C | donor_gain | 1.0000 |
| 7:44220059:CCTTC:C | donor_gain | 1.0000 |
| 7:44220290:CAGCA:C | acceptor_gain | 1.0000 |
| 7:44220291:AGCA:A | acceptor_gain | 1.0000 |
| 7:44220292:GCA:G | acceptor_gain | 1.0000 |
| 7:44220293:CA:C | acceptor_gain | 1.0000 |
| 7:44220293:CAC:C | acceptor_gain | 1.0000 |
| 7:44220294:ACTGT:A | acceptor_loss | 1.0000 |
| 7:44220295:C:CC | acceptor_gain | 1.0000 |
| 7:44220303:A:T | acceptor_gain | 1.0000 |
| 7:44220305:C:CT | acceptor_gain | 1.0000 |
| 7:44220306:A:T | acceptor_gain | 1.0000 |
| 7:44220605:T:TA | donor_gain | 1.0000 |
| 7:44220610:A:AC | donor_gain | 1.0000 |
| 7:44220611:C:CC | donor_gain | 1.0000 |
| 7:44220611:CTCA:C | donor_gain | 1.0000 |
| 7:44220614:A:AC | donor_gain | 1.0000 |
AlphaMissense
4331 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:44220113:C:A | W650C | 1.000 |
| 7:44220113:C:G | W650C | 1.000 |
| 7:44220115:A:G | W650R | 1.000 |
| 7:44220115:A:T | W650R | 1.000 |
| 7:44220134:C:A | W643C | 1.000 |
| 7:44220134:C:G | W643C | 1.000 |
| 7:44220136:A:G | W643R | 1.000 |
| 7:44220136:A:T | W643R | 1.000 |
| 7:44220141:C:G | R641P | 1.000 |
| 7:44220198:A:G | L622P | 1.000 |
| 7:44220201:C:G | R621P | 1.000 |
| 7:44220210:G:T | A618D | 1.000 |
| 7:44220215:G:C | C616W | 1.000 |
| 7:44220217:A:G | C616R | 1.000 |
| 7:44220255:A:G | L603P | 1.000 |
| 7:44220258:A:T | I602N | 1.000 |
| 7:44220657:A:G | L576P | 1.000 |
| 7:44220857:C:G | A548P | 1.000 |
| 7:44220865:A:G | L545P | 1.000 |
| 7:44240727:A:G | L309P | 1.000 |
| 7:44240739:A:G | L305P | 1.000 |
| 7:44240749:C:G | G302R | 1.000 |
| 7:44240749:C:T | G302R | 1.000 |
| 7:44241704:A:G | L300P | 1.000 |
| 7:44241709:T:A | R298S | 1.000 |
| 7:44241709:T:G | R298S | 1.000 |
| 7:44241710:C:A | R298I | 1.000 |
| 7:44241710:C:G | R298T | 1.000 |
| 7:44241721:G:C | F294L | 1.000 |
| 7:44241721:G:T | F294L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000005743 (7:44325623 C>T), RS1000050549 (7:44246435 CCACA>C,CCA), RS1000097920 (7:44219208 C>T), RS1000100361 (7:44272760 C>G), RS1000129323 (7:44283501 G>A), RS1000129901 (7:44272491 G>A), RS1000161524 (7:44287092 C>T), RS1000161942 (7:44283232 T>A,C), RS1000208433 (7:44290885 G>A,C), RS1000229640 (7:44240887 A>C,G), RS1000244638 (7:44256259 G>A), RS1000281510 (7:44316070 T>C), RS1000328461 (7:44267875 G>A), RS1000341681 (7:44245504 T>C), RS1000350905 (7:44288552 A>G)
Disease associations
OMIM: gene MIM:607707 | disease phenotypes: MIM:617799, MIM:619681, MIM:616579
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability, autosomal dominant 40 | Definitive | Autosomal dominant |
| intellectual disability, autosomal dominant 54 | Strong | Autosomal dominant |
| autosomal dominant non-syndromic intellectual disability | Supportive | Autosomal dominant |
Mondo (11): intellectual disability, autosomal dominant 54 (MONDO:0030920), intellectual disability (MONDO:0001071), hereditary ataxia (MONDO:0100309), neurodevelopmental disorder (MONDO:0700092), dystonia, early-onset, and/or spastic paraplegia (MONDO:0859215), intellectual disability, autosomal dominant 40 (MONDO:0014699), autism spectrum disorder (MONDO:0005258), microcephaly (MONDO:0001149), congenital nervous system disorder (MONDO:0002320), dystonic disorder (MONDO:0003441), autosomal dominant non-syndromic intellectual disability (MONDO:0015802)
Orphanet (4): Hereditary ataxia (Orphanet:183518), CHAMP1-related intellectual disability-facial dysmorphism-behavioral abnormalities syndrome (Orphanet:692193), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658), NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
64 total (30 of 64 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000016 | Urinary retention |
| HP:0000252 | Microcephaly |
| HP:0000331 | Short chin |
| HP:0000340 | Sloping forehead |
| HP:0000341 | Narrow forehead |
| HP:0000483 | Astigmatism |
| HP:0000486 | Strabismus |
| HP:0000490 | Deeply set eye |
| HP:0000505 | Visual impairment |
| HP:0000565 | Esotropia |
| HP:0000639 | Nystagmus |
| HP:0000678 | Dental crowding |
| HP:0000680 | Delayed eruption of primary teeth |
| HP:0000687 | Widely spaced teeth |
| HP:0000718 | Aggressive behavior |
| HP:0000729 | Autistic behavior |
| HP:0000737 | Irritability |
| HP:0000750 | Delayed speech and language development |
| HP:0000817 | Reduced eye contact |
| HP:0000958 | Dry skin |
| HP:0000964 | Eczematoid dermatitis |
| HP:0000970 | Anhidrosis |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001344 | Absent speech |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001436_15 | Metabolic syndrome | 9.000000e-11 |
| GCST002155_1 | Osteoarthritis (hip) | 8.000000e-10 |
| GCST005576_13 | Intracranial aneurysm | 1.000000e-06 |
| GCST006998_3 | Cerebrospinal fluid p-tau levels in mild cognitive impairment | 4.000000e-07 |
| GCST007267_321 | Systolic blood pressure | 4.000000e-08 |
| GCST010244_338 | Triglyceride levels | 8.000000e-14 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0000195 | metabolic syndrome |
| EFO:0004760 | t-tau measurement |
| EFO:0006335 | systolic blood pressure |
| EFO:0004530 | triglyceride measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020821 | Dystonic Disorders | C10.228.662.300 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| C531684 | Hereditary spinal ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2097164 (PROTEIN FAMILY), CHEMBL4121 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
25 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 330,238 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1336 | SORAFENIB | 4 | 86,060 |
| CHEMBL1789941 | RUXOLITINIB | 4 | 11,547 |
| CHEMBL189963 | PALBOCICLIB | 4 | 13,102 |
| CHEMBL3301610 | ABEMACICLIB | 4 | 7,045 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL300138 | ENZASTAURIN | 3 | 3,209 |
| CHEMBL223360 | LINIFANIB | 3 | 3,925 |
| CHEMBL428690 | ALVOCIDIB | 3 | 27,781 |
| CHEMBL491473 | CEDIRANIB | 3 | 9,098 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL103667 | DORAMAPIMOD | 2 | 1,681 |
| CHEMBL1721885 | SU-014813 | 2 | 363 |
| CHEMBL1967878 | CENISERTIB | 2 | 358 |
| CHEMBL1980297 | ILORASERTIB | 2 | 581 |
| CHEMBL362558 | LY-2090314 | 2 | 108 |
| CHEMBL384304 | RG-547 | 2 | 93 |
| CHEMBL513909 | BI-2536 | 2 | 895 |
| CHEMBL565612 | SOTRASTAURIN | 2 | |
| CHEMBL1908394 | GSK-461364 | 1 | |
| CHEMBL4439321 | ATUVECICLIB | 1 | |
| CHEMBL482767 | SNS-314 | 1 | |
| CHEMBL482967 | CYC-116 | 1 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — CAMK2 family
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| staurosporine | Inhibition | 10.0 | pIC50 |
Binding affinities (BindingDB)
4 measured of 6 human assays (6 total across all organisms); most potent 4 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Staurosporine | KD | 1.7 nM |
| PKC-412 | KD | 190 nM |
| 5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamide | KD | 2600 nM |
| N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | KD | 3500 nM |
ChEMBL bioactivities
294 potent at pChembl≥5 of 306 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.22 | IC50 | 0.0599 | nM | STAUROSPORINE |
| 10.19 | IC50 | 0.0642 | nM | STAUROSPORINE |
| 10.15 | IC50 | 0.07 | nM | STAUROSPORINE |
| 10.02 | IC50 | 0.0945 | nM | STAUROSPORINE |
| 9.05 | Kd | 0.882 | nM | CHEMBL5653589 |
| 8.89 | Kd | 1.3 | nM | STAUROSPORINE |
| 8.70 | IC50 | 2 | nM | STAUROSPORINE |
| 8.52 | Kd | 3 | nM | STAUROSPORINE |
| 8.46 | IC50 | 3.5 | nM | ABEMACICLIB |
| 8.40 | IC50 | 4 | nM | STAUROSPORINE |
| 8.23 | ED50 | 5.896 | nM | CHEMBL5653589 |
| 8.22 | IC50 | 6 | nM | STAUROSPORINE |
| 7.92 | Kd | 12 | nM | CHEMBL4576489 |
| 7.72 | Kd | 19 | nM | CHEMBL4465866 |
| 7.60 | IC50 | 25 | nM | CHEMBL312292 |
| 7.60 | IC50 | 25 | nM | STAUROSPORINE AGLYCON |
| 7.50 | IC50 | 32 | nM | CHEMBL2369378 |
| 7.44 | IC50 | 36 | nM | CHEMBL385035 |
| 7.34 | IC50 | 46 | nM | CHEMBL75368 |
| 7.31 | IC50 | 49 | nM | CHEMBL73764 |
| 7.24 | IC50 | 58 | nM | CHEMBL59785 |
| 7.23 | Kd | 59 | nM | LESTAURTINIB |
| 7.21 | IC50 | 62 | nM | CHEMBL307630 |
| 7.16 | IC50 | 70 | nM | CHEMBL1231206 |
| 7.10 | Ki | 79.43 | nM | CHEMBL1966628 |
| 7.09 | IC50 | 82 | nM | CHEMBL292021 |
| 7.09 | IC50 | 81 | nM | CHEMBL72808 |
| 7.08 | IC50 | 83 | nM | CHEMBL1945559 |
| 7.05 | IC50 | 90 | nM | CHEMBL308979 |
| 7.04 | IC50 | 92 | nM | CHEMBL293157 |
| 7.02 | IC50 | 95 | nM | CHEMBL76326 |
| 7.00 | Ki | 100 | nM | CHEMBL1986943 |
| 7.00 | Ki | 100 | nM | CHEMBL1974870 |
| 7.00 | Ki | 100 | nM | CHEMBL1998159 |
| 7.00 | Ki | 100 | nM | CHEMBL1970903 |
| 6.76 | IC50 | 174 | nM | CHEMBL293898 |
| 6.76 | IC50 | 174 | nM | CHEMBL72076 |
| 6.75 | IC50 | 177 | nM | CHEMBL306047 |
| 6.74 | IC50 | 184 | nM | STAUROSPORINONE |
| 6.70 | Ki | 199.5 | nM | CHEMBL1988537 |
| 6.68 | Kd | 210 | nM | MIDOSTAURIN |
| 6.67 | IC50 | 216 | nM | CHEMBL307152 |
| 6.63 | IC50 | 236 | nM | CHEMBL64742 |
| 6.60 | Ki | 251.2 | nM | CHEMBL1973540 |
| 6.60 | Ki | 251.2 | nM | CHEMBL2001751 |
| 6.60 | Ki | 251.2 | nM | CHEMBL1991063 |
| 6.58 | IC50 | 266 | nM | CHEMBL76337 |
| 6.52 | IC50 | 301 | nM | CHEMBL430606 |
| 6.51 | Kd | 310 | nM | RUXOLITINIB |
| 6.50 | Ki | 316.2 | nM | CHEMBL1995813 |
PubChem BioAssay actives
88 with measured affinity, of 1652 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1350959: Inhibition of CAMK2b (unknown origin) | ic50 | 0.0001 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147983: Binding affinity to human CAMK2B incubated for 45 mins by Kinobead based pull down assay | kd | 0.0009 | uM |
| Abemaciclib | 2199001: Inhibition of human CAMK2beta preincubated with compound for 20 mins followed by [33P]ATP addition and measured after 2 hrs by filter binding method | ic50 | 0.0035 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-methylamino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526288: Binding affinity to recombinant human full length N-terminal GST-tagged CAMK2B expressed in baculovirus expression system using GS peptide as substrate incubated for 1 hr in presence of calmodulin by TR-FRET assay | kd | 0.0120 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]amino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526288: Binding affinity to recombinant human full length N-terminal GST-tagged CAMK2B expressed in baculovirus expression system using GS peptide as substrate incubated for 1 hr in presence of calmodulin by TR-FRET assay | kd | 0.0190 | uM |
| 3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4,6,8,10,15,17,19,21-nonaene-12,14-dione | 45962: Inhibition of Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0250 | uM |
| 1-[2-(18-methyl-12,14-dioxo-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaen-5-yl)ethyl]piperidine-4-carboxamide | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0250 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-5-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-amino-6-[(2-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]-6-[(2-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]propanoyl]amino]-4-methylpentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-oxopentanoyl]amino]-4-carboxybutanoyl]amino]propanoyl]amino]-3-methylbutanoyl]amino]-3-carboxypropanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 220482: Inhibitory activity of compound against CaMKII | ic50 | 0.0320 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-5-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[[(2S)-6-amino-2-[(2-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]hexanoyl]amino]propanoyl]amino]-4-methylpentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-oxopentanoyl]amino]-4-carboxybutanoyl]amino]-3-methylbutanoyl]amino]-3-carboxypropanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 220482: Inhibitory activity of compound against CaMKII | ic50 | 0.0360 | uM |
| 5-[2-(4-hydroxypiperidin-1-yl)ethyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0460 | uM |
| 5-[2-[(4-hydroxycyclohexyl)amino]ethyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0490 | uM |
| 8-bromo-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.0580 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 507856: Binding affinity to CAMK2B | kd | 0.0590 | uM |
| 18-methyl-5-(2-piperidin-1-ylethyl)-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0620 | uM |
| methyl 1-[2-(18-methyl-12,14-dioxo-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaen-5-yl)ethyl]piperidine-4-carboxylate | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0810 | uM |
| 6-methyl-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.0820 | uM |
| 7,8-dichloro-9-methyl-1-oxospiro[2,4-dihydropyrido[3,4-b]indole-3,4’-piperidine]-4-carbonitrile | 643791: Inhibition of CaMK2 using ATP as substrate | ic50 | 0.0830 | uM |
| 5-[2-[(2S)-2-(hydroxymethyl)pyrrolidin-1-yl]ethyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0900 | uM |
| 6-fluoro-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.0920 | uM |
| 5-[2-(2-hydroxyethylamino)ethyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.0950 | uM |
| 20-bromo-3-methyl-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4,6,8,10,15,17(22),18,20-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.1740 | uM |
| 5-[3-(diethylamino)propyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.1740 | uM |
| 18-methyl-5-(2-morpholin-4-ylethyl)-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.1770 | uM |
| 3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4,6,8,10,15,17,19,21-nonaen-12-one | 45962: Inhibition of Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.1840 | uM |
| Midostaurin | 435394: Binding constant for CAMK2B kinase domain | kd | 0.2100 | uM |
| 5-[3-[(4-hydroxycyclohexyl)amino]propyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.2160 | uM |
| 6-methoxy-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.2360 | uM |
| 5-[3-(2-hydroxyethylamino)propyl]-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.2660 | uM |
| 18-methyl-5-(2-piperazin-1-ylethyl)-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.3010 | uM |
| Ruxolitinib | 624827: Binding constant for CAMK2B kinase domain | kd | 0.3100 | uM |
| 18-methyl-5-[3-(4-methylpiperazin-1-yl)propyl]-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.3820 | uM |
| 18-methyl-5-(2-thiomorpholin-4-ylethyl)-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.4030 | uM |
| 18-methyl-5-(3-morpholin-4-ylpropyl)-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4,6,8,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.5160 | uM |
| 3-[2-(2-hydroxyethylamino)ethyl]-6-methoxy-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4(9),5,7,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.5270 | uM |
| 3-[3-(2-hydroxyethylamino)propyl]-6-methoxy-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4(9),5,7,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.7320 | uM |
| 20-ethyl-17,23-dioxa-4,14,20,26-tetrazahexacyclo[24.6.1.17,14.02,6.08,13.027,32]tetratriaconta-1(33),2(6),7(34),8,10,12,27,29,31-nonaene-3,5-dione | 45969: Inhibition of Calcium/calmodulin-dependent protein kinase type II | ic50 | 0.7800 | uM |
| [4-amino-2-[(1-methylsulfonylpiperidin-4-yl)amino]pyrimidin-5-yl]-(2,3-difluoro-6-methoxyphenyl)methanone | 624827: Binding constant for CAMK2B kinase domain | kd | 0.8900 | uM |
| 6-chloro-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 0.9140 | uM |
| (2S)-1-[[5-(3-methyl-2H-indazol-5-yl)-3-pyridinyl]oxy]-3-phenylpropan-2-amine | 624827: Binding constant for CAMK2B kinase domain | kd | 0.9700 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-5-amino-2-[[(2S)-5-(diaminomethylideneamino)-2-[[(2S)-5-(diaminomethylideneamino)-2-[[(2S)-4-methyl-2-[[(2S)-2-(phenylmethoxycarbonylamino)propanoyl]amino]pentanoyl]amino]pentanoyl]amino]pentanoyl]amino]-5-oxopentanoyl]amino]-4-carboxybutanoyl]amino]propanoyl]amino]-3-methylbutanoyl]amino]-3-carboxypropanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 220482: Inhibitory activity of compound against CaMKII | ic50 | 1.0000 | uM |
| 3-[2-[(4-hydroxycyclohexyl)amino]ethyl]-6-methoxy-18-methyl-3,13,18-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,21]tricosa-1(16),2(10),4(9),5,7,11(15),17(21),19,22-nonaene-12,14-dione | 45968: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II | ic50 | 1.1700 | uM |
| (2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-5-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-6-amino-2-[(2-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]-6-[(2-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]propanoyl]amino]-4-methylpentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-oxopentanoyl]amino]-4-carboxybutanoyl]amino]-3-methylbutanoyl]amino]-3-carboxypropanoyl]amino]propanoyl]amino]-4-methylpentanoic acid | 220482: Inhibitory activity of compound against CaMKII | ic50 | 1.2000 | uM |
| 7-bromo-3,13,23-triazahexacyclo[14.7.0.02,10.04,9.011,15.017,22]tricosa-1,4(9),5,7,10,15,17,19,21-nonaene-12,14-dione | 45967: Inhibitory activity against Calcium/calmodulin-dependent protein kinase type II using autocamtide as substrate | ic50 | 1.2500 | uM |
| Sunitinib | 435394: Binding constant for CAMK2B kinase domain | kd | 1.4000 | uM |
| Palbociclib | 2199001: Inhibition of human CAMK2beta preincubated with compound for 20 mins followed by [33P]ATP addition and measured after 2 hrs by filter binding method | ic50 | 1.6000 | uM |
| 5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine | 624827: Binding constant for CAMK2B kinase domain | kd | 1.9000 | uM |
| 3-(1-methylindol-3-yl)-4-(1-piperidin-4-ylindol-3-yl)pyrrole-2,5-dione | 45084: Inhibition of purified mammalian brain [Ca(2+)]/Calmodulin dependent kinase | ic50 | 2.0000 | uM |
| 3-(1-methylindol-3-yl)-4-[1-(1-methylpiperidin-4-yl)indol-3-yl]pyrrole-2,5-dione | 45084: Inhibition of purified mammalian brain [Ca(2+)]/Calmodulin dependent kinase | ic50 | 2.0000 | uM |
| 5-[(Z)-(5-fluoro-2-oxo-1H-indol-3-ylidene)methyl]-N-[(2S)-2-hydroxy-3-morpholin-4-ylpropyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | 435394: Binding constant for CAMK2B kinase domain | kd | 2.3000 | uM |
| 3-(4-imidazo[1,2-a]pyridin-3-yl-2,5-dioxopyrrol-3-yl)-N,N-dimethyl-1,10-diazatricyclo[6.4.1.04,13]trideca-2,4,6,8(13)-tetraene-10-carboxamide | 241780: Inhibition of human Calcium/calmodulin-dependent protein kinase type II | ic50 | 2.5000 | uM |
CTD chemical–gene interactions
65 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Particulate Matter | affects cotreatment, increases expression, decreases expression, increases abundance | 4 |
| Benzo(a)pyrene | affects methylation, increases methylation, increases mutagenesis | 3 |
| Aflatoxin B1 | decreases expression, decreases methylation | 2 |
| aminomethylphosphonic acid (AMPA) | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| quercitrin | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| cypermethrin | increases expression | 1 |
| sodium arsenite | affects expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| ferrous chloride | decreases expression | 1 |
| aflatoxin B2 | affects methylation | 1 |
| cupric chloride | decreases expression | 1 |
| 4-(2-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-naphthalenyl)-1-propenyl)benzoic acid | affects cotreatment, increases expression | 1 |
| cyfluthrin | increases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| deguelin | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| Chir 99021 | affects cotreatment, increases expression | 1 |
| pyrimidifen | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| thifluzamide | decreases expression | 1 |
| pyrachlostrobin | decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| 3-(4-pyridyl)-1H-indole | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Glyphosate | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
ChEMBL screening assays
314 unique, capped per target: 313 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2422678 | Binding | Inhibition of CaMK2alpha/CaMK2beta/CaMK2delta/CaMK2gamma in human PC3 cell lysates at 10 uM using desthiobiotin-tagged ATP probe AX9989 followed by trypsinization by LC/MS analysis | Hit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors. — Bioorg Med Chem Lett |
| CHEMBL1963787 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: CAMK2B | PubChem BioAssay data set |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9AU | Ubigene HEK293 CAMK2B KO | Transformed cell line | Female |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT00202397 | PHASE2 | COMPLETED | Effect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
Related Atlas pages
- Associated diseases: intellectual disability, autosomal dominant 40, intellectual disability, autosomal dominant 54, autosomal dominant non-syndromic intellectual disability
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant non-syndromic intellectual disability, brain aneurysm, congenital nervous system disorder, dystonia, early-onset, and/or spastic paraplegia, dystonic disorder, hereditary ataxia, intellectual disability, autosomal dominant 40, intellectual disability, autosomal dominant 54, osteoarthritis