CAMTA1-DT

Summary

CAMTA1-DT (CAMTA1 divergent transcript, HGNC:53020) is a long non-coding RNA gene on chromosome 1p36.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53020
Approved symbol	CAMTA1-DT
Name	CAMTA1 divergent transcript
Location	1p36.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncCAMTA1
Ensembl gene	ENSG00000237436
Ensembl biotype	lncRNA
Entrez	110841581
RNAcentral	URS0000BC442D — lncRNA, 563 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000442889, ENST00000783080, ENST00000783081

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000442889 — 3 exons

Exon	Start	End
ENSE00001611862	6784658	6784843
ENSE00001655449	6783892	6784045
ENSE00001738622	6784149	6784223

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 93.17.

FANTOM5 (CAGE): breadth broad, TPM avg 1.1672 / max 81.5612, expressed in 579 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
10069	1.0803	570
10068	0.0869	18

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.17	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.66	gold quality
mucosa of transverse colon	UBERON:0004991	71.85	gold quality
apex of heart	UBERON:0002098	71.27	gold quality
muscle of leg	UBERON:0001383	71.22	gold quality
gastrocnemius	UBERON:0001388	70.98	gold quality
cortical plate	UBERON:0005343	70.46	gold quality
right lobe of thyroid gland	UBERON:0001119	70.24	gold quality
ganglionic eminence	UBERON:0004023	69.29	gold quality
tonsil	UBERON:0002372	69.24	gold quality
skeletal muscle tissue	UBERON:0001134	69.23	gold quality
ventricular zone	UBERON:0003053	69.23	gold quality
thyroid gland	UBERON:0002046	69.22	gold quality
right uterine tube	UBERON:0001302	69.07	gold quality
left lobe of thyroid gland	UBERON:0001120	68.73	gold quality
substantia nigra	UBERON:0002038	68.37	gold quality
muscle tissue	UBERON:0002385	68.32	gold quality
hypothalamus	UBERON:0001898	68.21	gold quality
metanephros cortex	UBERON:0010533	68.15	gold quality
pituitary gland	UBERON:0000007	67.92	gold quality
adenohypophysis	UBERON:0002196	67.82	gold quality
monocyte	CL:0000576	67.54	gold quality
amygdala	UBERON:0001876	67.39	gold quality
mucosa of stomach	UBERON:0001199	67.28	gold quality
putamen	UBERON:0001874	67.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.10	gold quality
granulocyte	CL:0000094	67.04	gold quality
Ammon’s horn	UBERON:0001954	66.21	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.96	gold quality
spleen	UBERON:0002106	65.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.