CAMTA1-IT1

Summary

CAMTA1-IT1 (CAMTA1 intronic transcript 1, HGNC:41446) is a long non-coding RNA gene on chromosome 1p36.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41446
Approved symbol	CAMTA1-IT1
Name	CAMTA1 intronic transcript 1
Location	1p36.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237402
Ensembl biotype	lncRNA
Entrez	124900385
RNAcentral	URS0002A4785B — lncRNA, 423 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000427317, ENST00000849779, ENST00000849780, ENST00000849781

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427317 — 2 exons

Exon	Start	End
ENSE00001641297	7368942	7369116
ENSE00001690699	7370081	7370270

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 86.11.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.11	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.07	gold quality
ganglionic eminence	UBERON:0004023	69.30	gold quality
skeletal muscle tissue	UBERON:0001134	69.19	silver quality
hindlimb stylopod muscle	UBERON:0004252	68.77	gold quality
placenta	UBERON:0001987	65.28	gold quality
monocyte	CL:0000576	64.97	gold quality
corpus callosum	UBERON:0002336	64.17	gold quality
prefrontal cortex	UBERON:0000451	61.08	gold quality
muscle of leg	UBERON:0001383	59.65	gold quality
stromal cell of endometrium	CL:0002255	59.51	gold quality
gastrocnemius	UBERON:0001388	59.13	gold quality
bone marrow	UBERON:0002371	58.73	gold quality
lower esophagus mucosa	UBERON:0035834	58.11	gold quality
right testis	UBERON:0004534	58.10	gold quality
left testis	UBERON:0004533	56.84	gold quality
testis	UBERON:0000473	56.81	gold quality
tonsil	UBERON:0002372	56.18	gold quality
primary visual cortex	UBERON:0002436	56.09	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.98	gold quality
islet of Langerhans	UBERON:0000006	55.73	gold quality
lymph node	UBERON:0000029	55.28	gold quality
superior frontal gyrus	UBERON:0002661	54.93	gold quality
kidney	UBERON:0002113	54.32	gold quality
blood	UBERON:0000178	54.27	gold quality
right adrenal gland	UBERON:0001233	54.02	gold quality
right adrenal gland cortex	UBERON:0035827	53.39	gold quality
liver	UBERON:0002107	52.97	gold quality
frontal cortex	UBERON:0001870	52.85	gold quality
adrenal tissue	UBERON:0018303	52.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.