CAND1
gene geneOn this page
Also known as TIP120ADKFZp434M1414KIAA0829TIP120
Summary
CAND1 (cullin associated and neddylation dissociated 1, HGNC:30688) is a protein-coding gene on chromosome 12q14.3-q15, encoding Cullin-associated NEDD8-dissociated protein 1 (Q86VP6). Key assembly factor of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes that promotes the exchange of the substrate-recognition F-box subunit in SCF complexes, thereby playing a key role in the cellular repertoire of SCF complexes. It is a selective cancer dependency (DepMap: 33.0% of cell lines).
This gene encodes an essential regulator of Cullin-RING ubiquitin ligases, which are in involved in ubiquitinylation of proteins degraded by the Ub proteasome system. The encoded protein binds to unneddylated cullin-RING box protein complexes and acts as an inhibitor of cullin neddylation and of Skp1, cullin, and F box ubiquitin ligase complex assembly and activity. In mammalian cell culture, this protein predominantly localizes to the cytoplasm. Knockdown of this gene in preadipocytes results in blocked adipogenesis. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 55832 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Clinical variants (ClinVar): 91 total — 1 pathogenic
- Regional missense constraint (gnomAD): 4 of 9 regions constrained (≈16% of expected missense variation)
- GTEx eGene: eQTL in 31 tissues, sQTL in 2 (q < 0.05)
- Cancer dependency (DepMap): dependent in 33.0% of screened cell lines
- Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.08 (highly constrained)
- MANE Select transcript:
NM_018448 - Interaction hub: 2,144 STRING partners (top 6% of genes corpus-wide)
- Notable: 91 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30688 |
| Approved symbol | CAND1 |
| Name | cullin associated and neddylation dissociated 1 |
| Location | 12q14.3-q15 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TIP120A, DKFZp434M1414, KIAA0829, TIP120 |
| Ensembl gene | ENSG00000111530 |
| Ensembl biotype | protein_coding |
| OMIM | 607727 |
| Entrez | 55832 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 8 nonsense_mediated_decay, 7 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
MANE Select: ENST00000545606
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 3, TSL 3: 2, TSL 4: 1
ENST00000545606, ENST00000535146, ENST00000539109, ENST00000539434, ENST00000540319, ENST00000540525, ENST00000541058, ENST00000544619, ENST00000909423, ENST00000974768, ENST00000974769, ENST00000974770, ENST00001037984, ENST00001037985, ENST00001037986, ENST00001090138, ENST00001095233, ENST00001107065, ENST00001135831
RefSeq mRNA: 4 — MANE Select: NM_018448
NM_001329674, NM_001329675, NM_001329676, NM_018448
CCDS: CCDS8977
Canonical transcript exons
ENST00000545606 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000920685 | 67297748 | 67297853 |
| ENSE00000920686 | 67298950 | 67299095 |
| ENSE00000920687 | 67302323 | 67302615 |
| ENSE00000920688 | 67304605 | 67304746 |
| ENSE00000920689 | 67305104 | 67306597 |
| ENSE00001100526 | 67292622 | 67292776 |
| ENSE00001100530 | 67295033 | 67295156 |
| ENSE00001244663 | 67269358 | 67269785 |
| ENSE00001801565 | 67311693 | 67311800 |
| ENSE00001805471 | 67310152 | 67310316 |
| ENSE00002212138 | 67312606 | 67319953 |
| ENSE00003468612 | 67307397 | 67307492 |
| ENSE00003495560 | 67297407 | 67297663 |
| ENSE00003608795 | 67309901 | 67310070 |
| ENSE00003677657 | 67281910 | 67282053 |
Expression profiles
Bgee: expression breadth ubiquitous, 290 present calls, max score 98.58.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 45.5414 / max 553.7314, expressed in 1821 samples.
Highest expression (Bgee): adrenal tissue, ventricular zone, ganglionic eminence, cortical plate, embryo.
Genetic regulation across tissues (GTEx eQTL / sQTL)
CAND1 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 31 tissues and its splicing (sQTL) in 2 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 33 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Nerve Tibial | eqtl | 2.9e-49 | +0.41 | 12:67348483:G:A |
| Skin Sun Exposed Lower leg | eqtl | 4.9e-37 | +0.24 | 12:67265906:G:T |
| Skin Not Sun Exposed Suprapubic | eqtl | 6.1e-35 | +0.27 | 12:67274102:T:G |
| Adipose Subcutaneous | eqtl | 1.6e-25 | +0.27 | 12:67311230:A:AGGTTTATGG |
| Breast Mammary Tissue | eqtl | 2.4e-21 | +0.31 | 12:67263701:A:C |
| Artery Tibial | eqtl | 5.0e-19 | +0.24 | 12:67246382:A:G |
| Cells Cultured fibroblasts | eqtl | 3.1e-16 | +0.15 | 12:67270198:T:G |
| Pancreas | eqtl | 3.6e-16 | +0.30 | 12:67289908:G:A |
| Adipose Visceral Omentum | eqtl | 5.2e-15 | +0.23 | 12:67308379:A:T |
| Lung | eqtl | 7.5e-15 | +0.22 | 12:67328232:G:A |
| Thyroid | eqtl | 4.3e-14 | +0.20 | 12:67328232:G:A |
| Colon Sigmoid | eqtl | 2.4e-13 | +0.20 | 12:67244924:T:C |
| Colon Transverse | eqtl | 4.0e-12 | +0.21 | 12:67274218:G:A |
| Stomach | eqtl | 1.1e-11 | +0.23 | 12:67328232:G:A |
| Prostate | eqtl | 1.7e-09 | +0.23 | 12:67328296:G:C |
| Muscle Skeletal | eqtl | 2.4e-09 | +0.19 | 12:67260224:A:G |
| Artery Aorta | eqtl | 1.2e-08 | +0.21 | 12:67244924:T:C |
| Esophagus Mucosa | eqtl | 2.1e-07 | +0.09 | 12:67376834:G:A |
| Brain Cerebellum | eqtl | 8.0e-07 | +0.14 | 12:67259837:T:C |
| Adrenal Gland | eqtl | 2.2e-06 | +0.21 | 12:67270198:T:G |
FANTOM5 promoters
8 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 126560 | 24.8255 | 1810 |
| 126564 | 15.0466 | 1773 |
| 126562 | 2.0716 | 1205 |
| 126561 | 1.8558 | 1126 |
| 126565 | 0.6962 | 418 |
| 126558 | 0.4203 | 209 |
| 126563 | 0.3705 | 141 |
| 126559 | 0.2549 | 126 |
Top tissues by expression
showing 100 of 293 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 98.58 | gold quality |
| ventricular zone | UBERON:0003053 | 98.54 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.21 | gold quality |
| cortical plate | UBERON:0005343 | 98.21 | gold quality |
| embryo | UBERON:0000922 | 97.36 | gold quality |
| stromal cell of endometrium | CL:0002255 | 97.13 | gold quality |
| calcaneal tendon | UBERON:0003701 | 96.27 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.46 | gold quality |
| endothelial cell | CL:0000115 | 95.35 | gold quality |
| vermiform appendix | UBERON:0001154 | 94.71 | gold quality |
| left ovary | UBERON:0002119 | 94.38 | gold quality |
| ovary | UBERON:0000992 | 94.35 | gold quality |
| right ovary | UBERON:0002118 | 94.13 | gold quality |
| endometrium | UBERON:0001295 | 94.08 | gold quality |
| parietal pleura | UBERON:0002400 | 94.03 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 93.84 | gold quality |
| tonsil | UBERON:0002372 | 93.84 | gold quality |
| body of pancreas | UBERON:0001150 | 93.78 | gold quality |
| rectum | UBERON:0001052 | 93.62 | gold quality |
| skin of abdomen | UBERON:0001416 | 93.60 | gold quality |
| caecum | UBERON:0001153 | 93.57 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.50 | gold quality |
| tibia | UBERON:0000979 | 93.45 | gold quality |
| right adrenal gland | UBERON:0001233 | 93.45 | gold quality |
| pancreas | UBERON:0001264 | 93.45 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.38 | gold quality |
| gall bladder | UBERON:0002110 | 93.31 | gold quality |
| adrenal gland | UBERON:0002369 | 93.26 | gold quality |
| mucosa of stomach | UBERON:0001199 | 93.17 | gold quality |
| colonic epithelium | UBERON:0000397 | 93.14 | gold quality |
| skin of leg | UBERON:0001511 | 93.08 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.07 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 93.06 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 93.04 | gold quality |
| penis | UBERON:0000989 | 93.04 | gold quality |
| zone of skin | UBERON:0000014 | 92.96 | gold quality |
| tibial nerve | UBERON:0001323 | 92.89 | gold quality |
| lymph node | UBERON:0000029 | 92.85 | gold quality |
| ectocervix | UBERON:0012249 | 92.85 | gold quality |
| body of uterus | UBERON:0009853 | 92.84 | gold quality |
| female reproductive system | UBERON:0000474 | 92.82 | gold quality |
| pleura | UBERON:0000977 | 92.75 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 92.75 | gold quality |
| endocervix | UBERON:0000458 | 92.74 | gold quality |
| cartilage tissue | UBERON:0002418 | 92.68 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 92.67 | gold quality |
| uterus | UBERON:0000995 | 92.65 | gold quality |
| right uterine tube | UBERON:0001302 | 92.61 | gold quality |
| esophagus mucosa | UBERON:0002469 | 92.58 | gold quality |
| corpus callosum | UBERON:0002336 | 92.57 | gold quality |
| vagina | UBERON:0000996 | 92.55 | gold quality |
| esophagus | UBERON:0001043 | 92.53 | gold quality |
| bone marrow cell | CL:0002092 | 92.52 | gold quality |
| adrenal cortex | UBERON:0001235 | 92.46 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 92.43 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 92.39 | gold quality |
| lower esophagus | UBERON:0013473 | 92.38 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 92.37 | gold quality |
| popliteal artery | UBERON:0002250 | 92.32 | gold quality |
| tibial artery | UBERON:0007610 | 92.31 | gold quality |
| right coronary artery | UBERON:0001625 | 92.27 | gold quality |
| urinary bladder | UBERON:0001255 | 92.22 | gold quality |
| minor salivary gland | UBERON:0001830 | 92.22 | gold quality |
| right testis | UBERON:0004534 | 92.14 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 92.06 | gold quality |
| aorta | UBERON:0000947 | 92.00 | gold quality |
| pons | UBERON:0000988 | 91.96 | gold quality |
| left uterine tube | UBERON:0001303 | 91.94 | gold quality |
| mouth mucosa | UBERON:0003729 | 91.93 | gold quality |
| left coronary artery | UBERON:0001626 | 91.83 | gold quality |
| thyroid gland | UBERON:0002046 | 91.83 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 91.81 | gold quality |
| corpus epididymis | UBERON:0004359 | 91.79 | gold quality |
| upper leg skin | UBERON:0004262 | 91.74 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 91.69 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 91.64 | gold quality |
| parietal lobe | UBERON:0001872 | 91.63 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 91.62 | gold quality |
| thoracic aorta | UBERON:0001515 | 91.61 | gold quality |
| frontal cortex | UBERON:0001870 | 91.61 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.60 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 91.59 | gold quality |
| testis | UBERON:0000473 | 91.57 | gold quality |
| hair follicle | UBERON:0002073 | 91.56 | gold quality |
| ascending aorta | UBERON:0001496 | 91.55 | gold quality |
| omental fat pad | UBERON:0010414 | 91.52 | gold quality |
| peritoneum | UBERON:0002358 | 91.51 | gold quality |
| postcentral gyrus | UBERON:0002581 | 91.49 | gold quality |
| coronary artery | UBERON:0001621 | 91.48 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 91.46 | gold quality |
| left testis | UBERON:0004533 | 91.44 | gold quality |
| placenta | UBERON:0001987 | 91.43 | gold quality |
| pituitary gland | UBERON:0000007 | 91.42 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 91.42 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 91.42 | gold quality |
| upper lobe of lung | UBERON:0008948 | 91.41 | gold quality |
| cerebellum | UBERON:0002037 | 91.40 | gold quality |
| right lung | UBERON:0002167 | 91.37 | gold quality |
| neocortex | UBERON:0001950 | 91.36 | gold quality |
| cerebellar cortex | UBERON:0002129 | 91.36 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.09 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 79 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Pons | tissue | 63.0 | |
| Thalamus | tissue | 60.8 | |
| Cerebral cortex | tissue | 59.4 | not detected |
| Somatosensory cortex | tissue | 59.4 | |
| Hippocampal formation | tissue | 56.1 | |
| Midbrain | tissue | 55.9 | |
| Superior colliculi | tissue | 55.8 | |
| Occipital cortex | tissue | 55.3 | |
| Medulla oblongata | tissue | 52.8 | |
| Motor cortex | tissue | 52.5 | |
| Spinal cord | tissue | 51.6 | |
| Locus coeruleus | tissue | 51.4 | |
| Retrosplenial and cingulate cortex | tissue | 51.2 | |
| Putamen | tissue | 50.7 | |
| Entorhinal cortex | tissue | 50.3 | |
| Prefrontal cortex | tissue | 49.7 | |
| Cerebellum | tissue | 49.7 | not detected |
| Septum | tissue | 49.2 | |
| Hypothalamus | tissue | 48.9 | |
| Substantia nigra | tissue | 48.6 | |
| Postcentral gyrus | tissue | 47.9 | |
| Retrosplenial cortex | tissue | 46.7 | |
| Temporal cortex | tissue | 46.6 | |
| Periaqueductal gray | tissue | 45.9 | |
| Nucleus accumbens | tissue | 45.7 | |
| Ventral forebrain | tissue | 45.1 | |
| Basal ganglia | tissue | 42.0 | not detected |
| Insular cortex | tissue | 40.5 | |
| Hippocampus | tissue | 40.3 | not detected |
| Corpus callosum | tissue | 40.0 | |
| Choroid plexus | tissue | 39.7 | |
| Olfactory bulb | tissue | 39.0 | |
| Amygdala | tissue | 38.6 | |
| Caudate putamen | tissue | 38.1 | |
| Thymus | tissue | 36.1 | |
| Frontal cortex | tissue | 35.8 | |
| Retina | tissue | 34.7 | |
| Tonsil | tissue | 28.9 | not detected |
| Skin 1 | tissue | 27.6 | not detected |
| Parathyroid gland | tissue | 26.6 | not detected |
| Epididymis | tissue | 26.2 | |
| Testis | tissue | 26.0 | low |
| Lymph node | tissue | 25.7 | not detected |
| Liver | tissue | 25.6 | low |
| Thyroid gland | tissue | 24.4 | medium |
| Breast | tissue | 24.3 | not detected |
| Ovary | tissue | 23.6 | low |
| Kidney | tissue | 22.7 | medium |
| Urinary bladder | tissue | 21.8 | low |
| Placenta | tissue | 21.8 | not detected |
| Adrenal gland | tissue | 21.8 | medium |
| Bone marrow | tissue | 21.4 | not detected |
| Esophagus | tissue | 21.0 | not detected |
| Prostate | tissue | 21.0 | not detected |
| Smooth muscle | tissue | 20.2 | low |
| Cervix | tissue | 20.1 | not detected |
| Endometrium 1 | tissue | 19.9 | medium |
| Rectum | tissue | 19.4 | not detected |
| Seminal vesicle | tissue | 18.8 | low |
| Appendix | tissue | 18.7 | not detected |
Brain sub-regions (HPA Brain Atlas): detected in 191; highest nTPM — Cerebellar cortex (58.8), Dorsal hippocampus (56.1), Vermis (51.9), Arcuate nucleus (51.7), Ventral spinal cord (51.6).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting CAND1 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 194 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
Functional genomics
gnomAD constraint: pLI 1, LOEUF 0.076, missense Z 4.82 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000545606 splits into 9 regions with different missense tolerance; 4 are missense-constrained (≈16% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 12:67,269,718–67,292,743 | 44 / 129.1 | 0.34 | yes (p 7.0e-14) |
| 12:67,292,744–67,306,379 | 697 / 942.0 | 0.74 | no |
| 12:67,306,380–67,310,066 | 106 / 182.0 | 0.58 | no |
| 12:67,310,067–67,310,223 | 6 / 33.3 | 0.18 | yes (p 2.3e-06) |
| 12:67,310,224–67,310,266 | 14 / 16.2 | 0.87 | no |
| 12:67,310,267–67,311,732 | 5 / 34.6 | 0.14 | yes (p 4.9e-07) |
| 12:67,311,733–67,311,789 | 22 / 24.4 | 0.90 | no |
| 12:67,311,790–67,312,691 | 8 / 35.9 | 0.22 | yes (p 3.2e-06) |
| 12:67,312,692–67,312,827 | 39 / 51.3 | 0.76 | no |
| DepMap (CRISPR cell-line fitness): dependent in 33.0% of screened cell lines. |
Most-dependent cell lines (DepMap gene-effect, lower = stronger; ≤ −0.5 shown): A388 (-1.256), HCC38 (-1.246), KMS-11 (-1.214), SK-LMS-1 (-1.21), VMRC-RCW (-1.168), HCC70 (-1.113), NCI-N87 (-1.108), PACADD-165 (-1.105), NCI-H2291 (-1.055), SK-N-FI (-1.043), BOKU (-1.033), BICR 10 (-1.03), MDST8 (-1.022), KP-N-SI9s (-1.01), HCC-827-GR5 (-1.006).
Literature-anchored findings (GeneRIF, showing 21)
- selectively binds to unneddylated CUL1 and is dissociated by CUL1 neddylation (PMID:12504025)
- binds to unneddylated CUL1 and regulates the formation of SCF ubiquitin E3 ligase complex (PMID:12504026)
- TIP120A functions as a negative regulator of SCF E3 ubiquitin ligases and may modulate other cullin ligases in a similar fashion. (PMID:12609982)
- CAND1 & COP9 signalosome (CSN), major deneddylase of cullins, bind to unneddylated CUL1 in mutually exclusive way. Suppression of CAND1 expression by siRNA enhanced interaction between CUL1 & CSN, suggesting that CAND1 inhibited binding of CSN to CUL1. (PMID:16036220)
- SCCRO recruits Ubc12 approximately NEDD8 to the CAND1-Cul1-ROC1 complex but that this is not sufficient to dissociate or overcome the inhibitory effects of CAND1 on cullin neddylation (PMID:18826954)
- miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression. (PMID:20820187)
- CAND1 does not function by sequestering cullins in vivo to prevent substrate receptor autoubiquitination and is likely to regulate cullin RING ligase activity via alternative mechanisms (PMID:21249194)
- COMMD1 (copper metabolism MURR1 domain-containing protein 1) regulates Cullin RING ligases by preventing CAND1 (Cullin-associated Nedd8-dissociated protein 1) binding. (PMID:21778237)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- The Epstein-Barr virus protein BPLF1, is targeted to cullin-RING ubiquitin ligases (CRLs) via the interaction of the conserved helix-2 with helix-23 of cullins, at a site involved in electrostatic interaction with CAND1. (PMID:22474075)
- CAND1 promotes PLK4-mediated centriole overduplication and is frequently disrupted in prostate cancer. (PMID:23019411)
- We demonstrate that the accumulation of p27 is associated with an increase of CAND1 and a decrease of Skp2 during adipogenesis of human LiSa-2 preadipocytes. CAND1 knockdown reduces p27 and blocks adipogenesis. (PMID:23328082)
- Study shows that Cand1 can unambiguously stimulate SCF activity in vitro by enabling an F box protein-Skp1 complex to access Cul1 that was previously occupied by a different F box protein-Skp1 complex, and that Cand1 promotes assembly in vivo of new F box proteins with pre-existing Cul1 molecules. (PMID:23453757)
- Data show that the differentiation of LiSa-2 preadipocytes is associated with an increase of cullin-associated and neddylation-dissociated 1 (CAND1), COP9 signalosome (CSN), neddylated cullin 3 (Cul3) and the BTB protein Keap1. (PMID:26219975)
- describe the identification of the structural determinants responsible for the CA IX/CAND1 interaction (PMID:28388044)
- miR-33a and CAND1 played an important role in lung cancer proliferation and cell migration (PMID:28871425)
- CAND1 regulates lunapark for the proper tubular network of the endoplasmic reticulum. (PMID:31511573)
- Cullin-associated and neddylation-dissociated 1 protein (CAND1) governs cardiac hypertrophy and heart failure partially through regulating calcineurin degradation. (PMID:35661710)
- Systemwide disassembly and assembly of SCF ubiquitin ligase complexes. (PMID:37028429)
- Structural and mechanistic insights into the CAND1-mediated SCF substrate receptor exchange. (PMID:37339624)
- ASCC3 promotes the immunosuppression and progression of non-small cell lung cancer by impairing the type I interferon response via CAND1-mediated ubiquitination inhibition of STAT3. (PMID:38148115)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cand1 | ENSDARG00000017841 |
| mus_musculus | Cand1 | ENSMUSG00000020114 |
| rattus_norvegicus | Cand1 | ENSRNOG00000007834 |
| drosophila_melanogaster | Cand1 | FBGN0027568 |
| caenorhabditis_elegans | WBGENE00013606 |
Paralogs (1): CAND2 (ENSG00000144712)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1261820) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 29 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal heart morphology | 1 |
| abnormal craniofacial morphology | 1 |
| enlarged liver | 1 |
| abnormal spleen morphology | 1 |
| enlarged spleen | 1 |
| enlarged lymph nodes | 1 |
| abnormal uterus morphology | 1 |
| abnormal ovary morphology | 1 |
| small testis | 1 |
| microphthalmia | 1 |
| abnormal blood vessel morphology | 1 |
| abnormal placenta morphology | 1 |
| edema | 1 |
| abnormal skin morphology | 1 |
| abnormal kidney morphology | 1 |
| small heart | 1 |
| abnormal lymph node morphology | 1 |
| decreased mean corpuscular volume | 1 |
| small kidney | 1 |
| embryonic growth retardation | 1 |
| increased response of heart to induced stress | 1 |
| decreased response of heart to induced stress | 1 |
| abnormal gallbladder morphology | 1 |
| decreased heart rate | 1 |
| enlarged gallbladder | 1 |
+4 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Bos taurus | A7MBJ5 | 100.0% | Diamond |
| Pongo abelii | Q5R6L5 | 98.5% | Diamond |
| Arabidopsis thaliana | Q8L5Y6 | 43.4% | Diamond |
| Dictyostelium discoideum | Q86KD1 | 41.1% | Diamond |
| Aspergillus nidulans FGSC A4 | Q5BAH2 | 31.2% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| LINC03240 | ncRNA | 124902957 |
| GRIP1 | protein-coding | 23426 |
Protein
Protein identifiers
Cullin-associated NEDD8-dissociated protein 1 — Q86VP6 (reviewed: Q86VP6)
Alternative names: Cullin-associated and neddylation-dissociated protein 1, TBP-interacting protein of 120 kDa A, p120 CAND1
All UniProt accessions (4): A0A0C4DGH5, F5H6I6, H0YH27, Q86VP6
UniProt curated annotations — full annotation on UniProt →
Function. Key assembly factor of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes that promotes the exchange of the substrate-recognition F-box subunit in SCF complexes, thereby playing a key role in the cellular repertoire of SCF complexes. Acts as a F-box protein exchange factor. The exchange activity of CAND1 is coupled with cycles of neddylation conjugation: in the deneddylated state, cullin-binding CAND1 binds CUL1-RBX1, increasing dissociation of the SCF complex and promoting exchange of the F-box protein. Probably plays a similar role in other cullin-RING E3 ubiquitin ligase complexes.
Subunit / interactions. Interacts with TBP. Part of a complex that contains CUL1 and RBX1. Interacts with unneddylated cullins: interacts with CUL1, CUL2, CUL3, CUL4A, CUL4B and CUL5. Does not bind neddylated CUL1. Interaction with cullins is abolished in presence of COMMD1, which antagonizes with CAND1 for interacting with cullins. Interacts with ERCC6. Interacts with DCUN1D1, DCUN1D2, DCUN1D3, DCUN1D4 and DCUN1D5; these interactions are bridged by cullins and strongly inhibits the neddylation of cullins.
Subcellular location. Cytoplasm. Nucleus.
Induction. Repressed by miR-148a.
Miscellaneous. A model has been proposed to explain the mechanisms of cullin-RING E3 ubiquitin ligase complexes assembly. According to this hypothesis, cullin-RING E3 ubiquitin ligase complexes exist in a ‘stable’ active state when saturated with substrate, occluding access to deneddylation by the COP9 signalosome (CSN) complex. The neddylation-conjugated cullin-RING E3 ubiquitin ligase complexes mediate ubiquitination of substrates and can recruit downstream factors involved in substrate degradation. Depletion of the substrate promotes the ability of CSN to bind the cullin-RING E3 ubiquitin ligase complex and mediate deneddylation. In this ‘intermediate’ deneddylated state, the complex can bind CAND1 and enter the ’exchange’ state, resulting in high increase in dissociation rate of the substrate-recognition subunit. The resulting CAND1-cullin-RING complex rapidly assembles with another available substrate-recognition subunit to form an unstable ternary intermediate and yield a new cullin-RING E3 ubiquitin ligase complex. Subsequent neddylation of the cullin, which is stabilized by substrate, completes the cycle.
Similarity. Belongs to the CAND family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86VP6-1 | 1 | yes |
| Q86VP6-2 | 2 | |
| Q86VP6-3 | 3 |
RefSeq proteins (4): NP_001316603, NP_001316604, NP_001316605, NP_060918* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR013932 | TATA-bd_TIP120 | Domain |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR039852 | CAND1/CAND2 | Family |
Pfam: PF08623, PF13513, PF25782
UniProt features (148 total): helix 77, repeat 27, strand 19, sequence conflict 6, turn 5, modified residue 5, splice variant 4, sequence variant 2, initiator methionine 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
14 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 7Z8R | CAND1-CUL1-RBX1 | ELECTRON MICROSCOPY | 2.7 |
| 7Z8V | CAND1-SCF-SKP2 (SKP1deldel) CAND1 engaged SCF rocked | ELECTRON MICROSCOPY | 2.7 |
| 8OR3 | CAND1-CUL1-RBX1-SKP1-SKP2-DCNL1 | ELECTRON MICROSCOPY | 2.9 |
| 7Z8T | CAND1-SCF-SKP2 CAND1 engaged SCF rocked | ELECTRON MICROSCOPY | 3 |
| 1U6G | Crystal Structure of The Cand1-Cul1-Roc1 Complex | X-RAY DIFFRACTION | 3.1 |
| 7ZBZ | CAND1 delhairpin-SCF-SKP2 CAND1 partly engaged SCF partly rocked | ELECTRON MICROSCOPY | 3.1 |
| 8OR0 | CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2 | ELECTRON MICROSCOPY | 3.1 |
| 8OR2 | CAND1-CUL1-RBX1-DCNL1 | ELECTRON MICROSCOPY | 3.2 |
| 8CDK | CAND1 b-hairpin++-SCF-SKP2 CAND1 partly engaged SCF partly rocked | ELECTRON MICROSCOPY | 3.32 |
| 8CDJ | CAND1 b-hairpin++-SCF-SKP2 CAND1 rolling SCF engaged | ELECTRON MICROSCOPY | 3.4 |
| 7ZBW | CAND1-SCF-SKP2 CAND1 rolling-2 SCF engaged | ELECTRON MICROSCOPY | 3.5 |
| 8H3Q | Cryo-EM Structure of the CAND1-Cul3-Rbx1 complex | ELECTRON MICROSCOPY | 3.76 |
| 4A0C | Structure of the CAND1-CUL4B-RBX1 complex | X-RAY DIFFRACTION | 3.8 |
| 8OR4 | Partially dissociated CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2 | ELECTRON MICROSCOPY | 3.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86VP6-F1 | 86.95 | 0.53 |
Human Protein Atlas
Protein class: Predicted intracellular proteins, Plasma proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): cytosol; golgi apparatus; nucleoplasm
Antibody reliability (HPA): IH approved · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5)
| Type | Positions |
|---|---|
| N-acetylalanine | 2 |
| N6-acetyllysine | 55, 971 |
| Phosphoserine | 335, 558 |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 8; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
8 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-168256 | Immune System | — |
| R-HSA-168249 | Innate Immune System | — |
| R-HSA-917937 | Iron uptake and transport | — |
| R-HSA-392499 | Metabolism of proteins | — |
| R-HSA-8951664 | Neddylation | — |
| R-HSA-6798695 | Neutrophil degranulation | — |
| R-HSA-597592 | Post-translational protein modification | — |
| R-HSA-382551 | Transport of small molecules | — |
MSigDB gene sets: 274 (showing top):
E2F_Q4, REACTOME_INNATE_IMMUNE_SYSTEM, E2F4DP1_01, GCM_GSPT1, MODULE_255, GOCC_SECRETORY_GRANULE, TTTGTAG_MIR520D, GOBP_POSITIVE_REGULATION_OF_DNA_TEMPLATED_TRANSCRIPTION_INITIATION, GCM_ZNF198, MODULE_317, TATTATA_MIR374, AP2_Q3, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, ATGTTAA_MIR302C, GOBP_REGULATION_OF_RNA_POLYMERASE_II_TRANSCRIPTION_PREINITIATION_COMPLEX_ASSEMBLY
GO Biological Process (6): SCF complex assembly (GO:0010265), protein ubiquitination (GO:0016567), cell differentiation (GO:0030154), negative regulation of catalytic activity (GO:0043086), positive regulation of RNA polymerase II transcription preinitiation complex assembly (GO:0045899), positive regulation of DNA-templated transcription (GO:0045893)
GO Molecular Function (2): TBP-class protein binding (GO:0017025), protein binding (GO:0005515)
GO Cellular Component (11): ubiquitin ligase complex (GO:0000151), extracellular region (GO:0005576), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), cullin-RING ubiquitin ligase complex (GO:0031461), secretory granule lumen (GO:0034774), extracellular exosome (GO:0070062), ficolin-1-rich granule lumen (GO:1904813)
Reactome top-level categories
5 top-level categories:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
| Post-translational protein modification | 1 |
| Transport of small molecules | 1 |
| Immune System | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
28 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| protein-containing complex assembly | 1 |
| protein modification by small protein conjugation | 1 |
| cellular developmental process | 1 |
| catalytic activity | 1 |
| negative regulation of molecular function | 1 |
| regulation of catalytic activity | 1 |
| positive regulation of protein-containing complex assembly | 1 |
| regulation of RNA polymerase II transcription preinitiation complex assembly | 1 |
| RNA polymerase II preinitiation complex assembly | 1 |
| positive regulation of transcription initiation by RNA polymerase II | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| general transcription initiation factor binding | 1 |
| binding | 1 |
| intracellular protein-containing complex | 1 |
| transferase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| ubiquitin ligase complex | 1 |
| secretory granule | 1 |
| cytoplasmic vesicle lumen | 1 |
| extracellular vesicle | 1 |
| intracellular organelle lumen | 1 |
| ficolin-1-rich granule | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 12 of 19 annotations. The rest are phylogenetic / computational / electronic (IEA).
12 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| SCF complex assembly | BP | direct assay |
| cell differentiation | BP | direct assay |
| negative regulation of catalytic activity | BP | direct assay |
| protein ubiquitination | BP | direct assay |
| cullin-RING ubiquitin ligase complex | CC | direct assay |
| cytoplasm | CC | direct assay |
| cytosol | CC | direct assay |
| extracellular exosome | CC | high-throughput assay |
| membrane | CC | high-throughput assay |
| nucleoplasm | CC | direct assay |
| nucleus | CC | direct assay |
| ubiquitin ligase complex | CC | direct assay |
Protein interactions and networks
STRING
showing 15 of 2,144 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CAND1 | NEDD8 | Q15843 | 907 |
| CAND1 | CUL1 | Q13616 | 888 |
| CAND1 | SKP1 | P34991 | 860 |
| CAND1 | RBX1 | P62877 | 841 |
| CAND1 | COPS5 | Q92905 | 779 |
| CAND1 | SKP2 | Q13309 | 729 |
| CAND1 | UBE2M | P61081 | 714 |
| CAND1 | CUL3 | Q13618 | 688 |
| CAND1 | PSMD14 | O00487 | 670 |
| CAND1 | NAE1 | Q13564 | 659 |
| CAND1 | CUL2 | Q13617 | 641 |
| CAND1 | CUL5 | Q93034 | 638 |
| CAND1 | UBE2F | Q969M7 | 633 |
| CAND1 | UBA3 | Q8TBC4 | 629 |
| CAND1 | RNF7 | Q9UBF6 | 624 |
IntAct
Human interaction partners of CAND1 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
15 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| CUL1 | physical association | 0.960 | 15 |
| CUL4B | direct interaction | 0.840 | 3 |
| CUL3 | physical association | 0.750 | 2 |
| CUL4A | physical association | 0.720 | 2 |
| RBX1 | physical association | 0.710 | 10 |
| CUL2 | physical association | 0.640 | 2 |
| RPL27A | physical association | 0.560 | 1 |
| NUP62 | direct interaction | 0.440 | 1 |
| SRPK2 | phosphorylation reaction | 0.440 | 1 |
| YWHAZ | physical association | 0.400 | 1 |
| MTNR1A | physical association | 0.370 | 1 |
| FBXO25 | association | 0.350 | 1 |
| GTPBP10 | association | 0.350 | 1 |
| HSPA13 | physical association | 0.000 | 1 |
| STXBP1 | physical association | 0.000 | 1 |
BioGRID (1,296 interactions; top human partners by supporting records in a sample of 600 records): CUL1 (Affinity Capture-Western; 37 records), CUL3 (Affinity Capture-Western; 18 records), CUL4A (Affinity Capture-Western; 13 records), DCUN1D1 (Reconstituted Complex; 13 records), CUL4B (Affinity Capture-MS; 12 records), CUL2 (Affinity Capture-Western; 9 records), CUL5 (Affinity Capture-MS; 9 records), RBX1 (Reconstituted Complex; 9 records), DCUN1D3 (Affinity Capture-Western; 6 records), KIAA1715 (Affinity Capture-Western; 6 records), DCUN1D2 (Affinity Capture-MS; 3 records), DCUN1D5 (Affinity Capture-MS; 3 records), ERCC6 (Affinity Capture-MS; 3 records), RPH3A (Affinity Capture-MS; 3 records), UBE2M (Affinity Capture-MS; 3 records)
Protein complexes (CORUM) (5)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
5 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| CAND1-CUL1-RBX1 complex | 3 | CAND1, CUL1, RBX1 |
| CAND1-CUL2-RBX1 complex | 3 | CAND1, CUL2, RBX1 |
| CAND1-CUL3-RBX1 complex | 3 | CAND1, CUL3, RBX1 |
| CAND1-CUL4A-RBX1 complex | 3 | CAND1, CUL4A, RBX1 |
| CAND1-CUL4B-RBX1 complex | 3 | CUL4B, RBX1, CAND1 |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 15 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Neddylation | 6 | 21.9× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| G1/S transition of mitotic cell cycle | 5 | 66.9× | 1e-06 |
| protein ubiquitination | 7 | 19.3× | 2e-06 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 5 | 17.4× | 2e-04 |
Disease & clinical
Genetic variants
Variant evidence for CAND1: 91 ClinVar records (1 pathogenic / likely pathogenic); 8 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
91 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 73 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
Showing all 1 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 1340105 | GRCh37/hg19 12q14.3-15(chr12:66045645-68872343)x1 | Pathogenic | no assertion criteria provided | 1 |
Per-variant reference — Sugi Variant
Explore CAND1’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 24 predictions of 1,427):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 12:67281904 | acceptor_gain | 1.0000 | |
| 12:67281908–67281909 | acceptor_loss | 1.0000 | 4 |
| 12:67281909 | acceptor_gain | 1.0000 | |
| 12:67281983 | donor_gain | 1.0000 | |
| 12:67282054–67282055 | donor_loss | 1.0000 | 5 |
| 12:67292620–67292621 | acceptor_loss | 1.0000 | 4 |
| 12:67292777–67292778 | donor_loss | 1.0000 | 5 |
| 12:67295028 | acceptor_gain | 1.0000 | |
| 12:67295032 | acceptor_loss | 1.0000 | |
| 12:67295157 | donor_loss | 1.0000 |
AlphaMissense
4,607 missense substitutions predicted likely pathogenic (of 8,074 scored), across 1,012 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M25 | 9 | 0.999 | 1.000 |
| M1068 | 9 | 0.996 | 1.000 |
| M15 | 9 | 0.988 | 1.000 |
| M1121 | 9 | 0.959 | 0.998 |
| M95 | 9 | 0.903 | 0.998 |
| M1126 | 9 | 0.837 | 0.998 |
| M52 | 9 | 0.831 | 0.978 |
| D21 | 8 | 1.000 | 1.000 |
| D344 | 8 | 1.000 | 1.000 |
| D582 | 8 | 1.000 | 1.000 |
| D19 | 8 | 0.999 | 1.000 |
| D29 | 8 | 0.999 | 1.000 |
| D59 | 8 | 0.999 | 1.000 |
| D308 | 8 | 0.999 | 1.000 |
| D341 | 8 | 0.999 | 1.000 |
| F1071 | 8 | 0.999 | 1.000 |
| D1076 | 8 | 0.999 | 1.000 |
| N621 | 8 | 0.998 | 1.000 |
| D1115 | 8 | 0.997 | 0.999 |
| D1118 | 8 | 0.997 | 1.000 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
4 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 5.34e-07 |
| Lung Adenocarcinoma (TCGA) | unfavorable | 5.54e-06 |
| Liver Hepatocellular Carcinoma (TCGA) | unfavorable | 0.000145 |
| Ovary Serous Cystadenocarcinoma (validation) | unfavorable | 0.000837 |
Disease associations
OMIM: gene MIM:607727 | disease phenotypes:
GWAS associations
8 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST006628_43 | Systolic blood pressure | 5e-10 |
| GCST010242_298 | HDL cholesterol levels | 7e-10 |
| GCST010244_289 | Triglyceride levels | 3e-9 |
| GCST004735_37 | Epstein-Barr virus copy number in lymphoblastoid cell lines | 5e-7 |
| GCST002611_4 | Expressive vocabulary in infants | 7e-7 |
| GCST004791_3 | Amyotrophic lateral sclerosis (C9orf72 mutation interaction) | 3e-6 |
| GCST000461_6 | Hippocampal atrophy | 5e-6 |
| GCST009391_680 | Metabolite levels | 7e-6 |
EFO canonical traits (from GWAS)
6 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0005039 | hippocampal atrophy |
| EFO:0006316 | infant expressive language ability |
| EFO:0006335 | systolic blood pressure |
| EFO:0010506 | kynurenic acid measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004530 | triglyceride measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067277 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
Binding affinities (BindingDB)
1 measured of 1 human assays (2 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL5653589 | KD | 1440 nM |
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.96 | Kd | 110.4 | nM | CHEMBL3752910 |
| 6.96 | ED50 | 110.4 | nM | CHEMBL3752910 |
| 5.76 | Kd | 1737 | nM | CHEMBL5653589 |
| 5.76 | ED50 | 1737 | nM | CHEMBL5653589 |
PubChem BioAssay actives
2 with measured affinity, of 4 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147987: Binding affinity to human CAND1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1104 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2147987: Binding affinity to human CAND1 incubated for 45 mins by Kinobead based pull down assay | kd | 1.7373 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression | 4 |
| bisphenol A | decreases expression, increases expression | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Caffeine | decreases expression, decreases phosphorylation | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| lead acetate | affects cotreatment, increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, decreases expression, affects localization | 1 |
| zinc protoporphyrin | affects cotreatment, increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| epigallocatechin gallate | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| LDN 193189 | increases expression, affects cotreatment | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Vehicle Emissions | increases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases mutagenesis | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651029 | Binding | Binding affinity to human CAND1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — *ChemMedChem* |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 300 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | Phase 4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | Phase 4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | Phase 4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | Phase 4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | Phase 4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | Phase 4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | Phase 4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | Phase 4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | Phase 4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | Phase 4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | Phase 4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | Phase 4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | Phase 4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | Phase 4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | Phase 4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | Phase 4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | Phase 4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | Phase 4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | Phase 4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | Phase 4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | Phase 4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | Phase 4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | Phase 4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | Phase 4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | Phase 4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | Phase 4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | Phase 4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | Phase 4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | Phase 4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | Phase 4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | Phase 4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | Phase 4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | Phase 4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | Phase 4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | Phase 4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | Phase 4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | Phase 4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | Phase 4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | Phase 4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | Phase 4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
| NCT01673984 | Phase 4 | TERMINATED | GP Extended Action Triptorelin |
| NCT01753297 | Phase 4 | COMPLETED | A Study of Immediate 9 Months Adjuvant Hormone Therapy With Triptorelin 11.25 mg Versus Active Surveillance After Radical Prostatectomy in High Risk Prostate Cancer Patients. |
| NCT01794793 | Phase 4 | COMPLETED | Study to Allow Access to Pasireotide for Patients Benefiting From Pasireotide Treatment in Novartis-sponsored Studies |
| NCT01950871 | Phase 4 | TERMINATED | Prostate Guided Biopsy Study Evaluating the Diagnostic Performance of Prostate HistoScanning |
| NCT01995513 | Phase 4 | COMPLETED | Safety Study of Continued Enzalutamide Treatment In Prostate Cancer Patients |
| NCT02102646 | Phase 4 | COMPLETED | MRI Substudy; Metabolic Changes Due to Iatrogenic Hypogonadism |
| NCT02116582 | Phase 4 | COMPLETED | A Study to Evaluate Enzalutamide After Abiraterone in Metastatic Castration-Resistant Prostate Cancer |
| NCT02149628 | Phase 4 | COMPLETED | The Effect of Propofol Based Total Intravenous Anesthesia on Oxidative Stress and Nitric Oxide |
| NCT02405858 | Phase 4 | COMPLETED | A Study of Abiraterone Acetate in Metastatic Castration-Resistant Prostate Cancer Participants Who Responded Poorly to the First-line Combined Androgen Blockade Therapy |
| NCT02441517 | Phase 4 | TERMINATED | A Study of Enzalutamide Re-treatment in Metastatic Castration-resistant Prostate Cancer After Docetaxel and/or Cabazitaxel Treatment |
| NCT02441894 | Phase 4 | COMPLETED | Combination of Cabazitaxel With Prednisolone With Primary Prophylaxis With PEG-G-CSF in Treatment of Patients With Prostate Cancer |
| NCT02475057 | Phase 4 | COMPLETED | Endothelial Function in Prostate Cancer Patients on Degarelix vs. Luteinizing Hormone-Releasing Hormone Agonists |
| NCT02511665 | Phase 4 | UNKNOWN | Metformin And Longevity |
| NCT02651948 | Phase 4 | COMPLETED | Transperineal, MRI-guided, Prostate Biopsy |
| NCT02721433 | Phase 4 | COMPLETED | 4-weekly Versus 12-weekly Administration of Bone-targeted Agents in Patients With Bone Metastases |
| NCT02726009 | Phase 4 | COMPLETED | A Trial to Evaluate Safety of Firmagon® (Degarelix) in Indian Patients Diagnosed With Advanced Hormone-dependent Prostate Cancer |
| NCT02749825 | Phase 4 | TERMINATED | Comparison of Trelstar Versus Lupron or Zoladex in Advanced Prostate Cancer |
| NCT02757365 | Phase 4 | UNKNOWN | Efficiency Study of Aspirin to Prevent the Occurrence of Prostate Cancer |
| NCT02773251 | Phase 4 | COMPLETED | The Effect of Guardix-solution for the Prevention of Postoperative Intestinal Adhesion and Intestinal Obstruction After Laparoscopic Pelvic Cavity Surgery |
| NCT02812186 | Phase 4 | COMPLETED | Deep Versus Moderate Neuromuscular Blockade During Laparoscopic Surgery |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for CAND1 across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Epstein-Barr virus infection