CAPN1-AS1

Summary

CAPN1-AS1 (CAPN1 antisense RNA 1, HGNC:56068) is a long non-coding RNA gene on chromosome 11q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56068
Approved symbol	CAPN1-AS1
Name	CAPN1 antisense RNA 1
Location	11q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254614
Ensembl biotype	lncRNA
Entrez	728975
RNAcentral	URS0000ABD8A5 — lncRNA, 1812 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000526623, ENST00000528551

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000526623 — 2 exons

Exon	Start	End
ENSE00002156901	65181225	65181834
ENSE00002201777	65180021	65181072

Expression profiles

Bgee: expression breadth ubiquitous, 136 present calls, max score 92.88.

Top tissues by expression

137 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	92.88	gold quality
leukocyte	CL:0000738	91.99	gold quality
gastrocnemius	UBERON:0001388	83.34	gold quality
muscle of leg	UBERON:0001383	83.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	80.88	gold quality
skeletal muscle tissue	UBERON:0001134	80.33	gold quality
granulocyte	CL:0000094	79.23	gold quality
blood	UBERON:0000178	79.02	gold quality
mucosa of transverse colon	UBERON:0004991	78.48	gold quality
muscle tissue	UBERON:0002385	77.67	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.54	gold quality
heart left ventricle	UBERON:0002084	75.10	gold quality
rectum	UBERON:0001052	73.83	gold quality
duodenum	UBERON:0002114	73.64	gold quality
metanephros cortex	UBERON:0010533	73.55	gold quality
body of pancreas	UBERON:0001150	73.20	gold quality
esophagus mucosa	UBERON:0002469	72.47	gold quality
right lung	UBERON:0002167	72.27	gold quality
heart	UBERON:0000948	72.11	gold quality
transverse colon	UBERON:0001157	72.04	gold quality
cortical plate	UBERON:0005343	71.85	gold quality
stromal cell of endometrium	CL:0002255	71.63	gold quality
pancreas	UBERON:0001264	71.42	gold quality
tonsil	UBERON:0002372	71.05	gold quality
right atrium auricular region	UBERON:0006631	70.96	gold quality
colonic epithelium	UBERON:0000397	70.87	silver quality
adult mammalian kidney	UBERON:0000082	70.55	gold quality
liver	UBERON:0002107	70.53	gold quality
right lobe of liver	UBERON:0001114	70.44	gold quality
descending thoracic aorta	UBERON:0002345	70.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.