CAPN10-DT

Summary

CAPN10-DT (CAPN10 divergent transcript, HGNC:48839) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48839
Approved symbol	CAPN10-DT
Name	CAPN10 divergent transcript
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	locus959
Ensembl gene	ENSG00000260942
Ensembl biotype	lncRNA
Entrez	101752400
RNAcentral	URS0000759CED — lncRNA, 3567 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000567819, ENST00000791519, ENST00000791520, ENST00000791521, ENST00000791522

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000567819 — 1 exons

Exon	Start	End
ENSE00002584797	240582700	240586699

Expression profiles

Bgee: expression breadth ubiquitous, 162 present calls, max score 80.61.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0748 / max 10.3419, expressed in 35 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34837	0.0748	35

Top tissues by expression

244 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.61	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.38	gold quality
kidney epithelium	UBERON:0004819	77.77	gold quality
pancreatic ductal cell	CL:0002079	76.60	silver quality
left ventricle myocardium	UBERON:0006566	75.36	gold quality
cardiac muscle of right atrium	UBERON:0003379	74.87	gold quality
cerebellar hemisphere	UBERON:0002245	70.43	gold quality
right hemisphere of cerebellum	UBERON:0014890	70.36	gold quality
cerebellar cortex	UBERON:0002129	70.28	gold quality
lower esophagus mucosa	UBERON:0035834	69.68	gold quality
cerebellum	UBERON:0002037	68.93	gold quality
bone marrow cell	CL:0002092	68.31	silver quality
apex of heart	UBERON:0002098	67.31	gold quality
body of uterus	UBERON:0009853	67.25	gold quality
right lobe of thyroid gland	UBERON:0001119	67.06	gold quality
right uterine tube	UBERON:0001302	66.89	gold quality
right coronary artery	UBERON:0001625	66.65	gold quality
left lobe of thyroid gland	UBERON:0001120	66.61	gold quality
metanephros cortex	UBERON:0010533	66.55	gold quality
stromal cell of endometrium	CL:0002255	66.45	gold quality
left ovary	UBERON:0002119	66.35	gold quality
thyroid gland	UBERON:0002046	65.93	gold quality
right ovary	UBERON:0002118	65.78	gold quality
pituitary gland	UBERON:0000007	65.66	gold quality
granulocyte	CL:0000094	65.24	gold quality
adenohypophysis	UBERON:0002196	65.14	gold quality
endocervix	UBERON:0000458	64.91	gold quality
cortical plate	UBERON:0005343	64.91	gold quality
mucosa of transverse colon	UBERON:0004991	64.78	gold quality
lower esophagus muscularis layer	UBERON:0035833	64.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.