CAPN12
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Summary
CAPN12 (calpain 12, HGNC:13249) is a protein-coding gene on chromosome 19q13.2, encoding Calpain-12 (Q6ZSI9). Calcium-regulated non-lysosomal thiol-protease.
The calpains, calcium-activated neutral proteases, are nonlysosomal, intracellular cysteine proteases. The mammalian calpains include ubiquitous, stomach-specific, and muscle-specific proteins. The ubiquitous enzymes consist of heterodimers with distinct large, catalytic subunits associated with a common small, regulatory subunit. This gene encodes a member of the calpain large subunit family.
Source: NCBI Gene 147968 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability (Disputed Evidence, GenCC)
- GWAS associations: 5
- Clinical variants (ClinVar): 266 total
- MANE Select transcript:
NM_144691
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13249 |
| Approved symbol | CAPN12 |
| Name | calpain 12 |
| Location | 19q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000182472 |
| Ensembl biotype | protein_coding |
| OMIM | 608839 |
| Entrez | 147968 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 5 protein_coding, 5 retained_intron, 2 nonsense_mediated_decay
ENST00000328867, ENST00000593700, ENST00000594497, ENST00000594552, ENST00000595177, ENST00000597354, ENST00000597716, ENST00000597740, ENST00000597987, ENST00000598684, ENST00000601685, ENST00000601953
RefSeq mRNA: 1 — MANE Select: NM_144691
NM_144691
CCDS: CCDS12519
Canonical transcript exons
ENST00000328867 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001367197 | 38743033 | 38743102 |
| ENSE00001367263 | 38738574 | 38738648 |
| ENSE00001369214 | 38737156 | 38737388 |
| ENSE00001370127 | 38735502 | 38735544 |
| ENSE00001373138 | 38738418 | 38738503 |
| ENSE00001379160 | 38743929 | 38744474 |
| ENSE00001379652 | 38738273 | 38738347 |
| ENSE00001379747 | 38737475 | 38737638 |
| ENSE00001387638 | 38740051 | 38740219 |
| ENSE00002534107 | 38736552 | 38736563 |
| ENSE00003097816 | 38730192 | 38730878 |
| ENSE00003459190 | 38730965 | 38731023 |
| ENSE00003517908 | 38736110 | 38736318 |
| ENSE00003521661 | 38734142 | 38734204 |
| ENSE00003535958 | 38734319 | 38734389 |
| ENSE00003567432 | 38733703 | 38733781 |
| ENSE00003638034 | 38742410 | 38742528 |
| ENSE00003657269 | 38734813 | 38734870 |
| ENSE00003665903 | 38731107 | 38731223 |
| ENSE00003693511 | 38735370 | 38735429 |
| ENSE00003788081 | 38741777 | 38741910 |
Expression profiles
Bgee: expression breadth ubiquitous, 187 present calls, max score 99.37.
FANTOM5 (CAGE): breadth broad, TPM avg 0.9467 / max 36.6049, expressed in 339 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 180802 | 0.5350 | 248 |
| 180800 | 0.3151 | 153 |
| 180801 | 0.0965 | 47 |
Top tissues by expression
251 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pancreatic ductal cell | CL:0002079 | 99.37 | gold quality |
| gall bladder | UBERON:0002110 | 95.75 | gold quality |
| right lobe of liver | UBERON:0001114 | 93.99 | gold quality |
| kidney epithelium | UBERON:0004819 | 93.15 | silver quality |
| lower esophagus mucosa | UBERON:0035834 | 92.05 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 90.55 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 90.22 | gold quality |
| buccal mucosa cell | CL:0002336 | 89.97 | gold quality |
| right uterine tube | UBERON:0001302 | 89.39 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 88.13 | gold quality |
| metanephros cortex | UBERON:0010533 | 87.10 | gold quality |
| parotid gland | UBERON:0001831 | 85.96 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 85.93 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.75 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 84.81 | silver quality |
| cortex of kidney | UBERON:0001225 | 84.00 | gold quality |
| spleen | UBERON:0002106 | 83.31 | gold quality |
| liver | UBERON:0002107 | 83.24 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 82.09 | gold quality |
| kidney | UBERON:0002113 | 81.56 | gold quality |
| metanephros | UBERON:0000081 | 81.44 | gold quality |
| oocyte | CL:0000023 | 81.23 | gold quality |
| superficial temporal artery | UBERON:0001614 | 81.02 | silver quality |
| myocardium | UBERON:0002349 | 80.83 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.38 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 79.21 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 79.12 | gold quality |
| body of pancreas | UBERON:0001150 | 78.79 | gold quality |
| granulocyte | CL:0000094 | 78.43 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 77.58 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9543 | yes | 40.23 |
| E-GEOD-70580 | no | 336.84 |
| E-GEOD-86618 | no | 106.46 |
| E-GEOD-124858 | no | 45.94 |
| E-CURD-112 | no | 3.06 |
| E-ANND-3 | no | 2.63 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
40 targeting CAPN12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-4699-3P | 99.71 | 70.15 | 3142 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-6134 | 99.63 | 65.68 | 1537 |
| HSA-MIR-497-3P | 99.61 | 69.71 | 1990 |
| HSA-MIR-516B-5P | 99.56 | 66.33 | 1495 |
| HSA-MIR-4762-3P | 99.43 | 69.72 | 2363 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
| HSA-MIR-876-3P | 98.76 | 68.23 | 945 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-12114 | 98.70 | 63.45 | 730 |
| HSA-MIR-7155-5P | 98.65 | 66.14 | 1290 |
| HSA-MIR-4700-5P | 98.63 | 67.43 | 1915 |
| HSA-MIR-1261 | 98.62 | 68.10 | 896 |
| HSA-MIR-4782-5P | 98.35 | 69.33 | 1474 |
| HSA-MIR-5706 | 98.35 | 69.33 | 1463 |
| HSA-MIR-326 | 98.25 | 66.44 | 1565 |
| HSA-MIR-637 | 97.91 | 64.05 | 1517 |
| HSA-MIR-8089 | 97.74 | 66.21 | 1698 |
| HSA-MIR-3144-5P | 97.64 | 65.45 | 646 |
Literature-anchored findings (GeneRIF, showing 1)
- calpain 12 plays an essential role during epidermal ontogenesis and normal hair follicle cycling. (PMID:27769845)
Cross-species orthologs
13 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Capn12 | ENSMUSG00000054083 |
| rattus_norvegicus | Capn12 | ENSRNOG00000020389 |
| drosophila_melanogaster | CalpB | FBGN0025866 |
| drosophila_melanogaster | Pef | FBGN0033529 |
| caenorhabditis_elegans | WBGENE00000542 | |
| caenorhabditis_elegans | clp-3 | WBGENE00000544 |
| caenorhabditis_elegans | WBGENE00000546 | |
| caenorhabditis_elegans | WBGENE00000547 | |
| caenorhabditis_elegans | WBGENE00006606 | |
| caenorhabditis_elegans | clp-8 | WBGENE00009695 |
| caenorhabditis_elegans | clpr-3 | WBGENE00010417 |
| caenorhabditis_elegans | clpr-1 | WBGENE00012233 |
| caenorhabditis_elegans | clpr-3 | WBGENE00013184 |
Paralogs (20): CAPN1 (ENSG00000014216), SRI (ENSG00000075142), CAPN6 (ENSG00000077274), CAPN3 (ENSG00000092529), CAPN15 (ENSG00000103326), GCA (ENSG00000115271), ADGB (ENSG00000118492), CAPNS1 (ENSG00000126247), CAPN7 (ENSG00000131375), CAPN9 (ENSG00000135773), CAPN11 (ENSG00000137225), CAPN10 (ENSG00000142330), CAPN5 (ENSG00000149260), PEF1 (ENSG00000162517), CAPN2 (ENSG00000162909), CAPN13 (ENSG00000162949), CAPN8 (ENSG00000203697), CAPN14 (ENSG00000214711), PDCD6 (ENSG00000249915), CAPNS2 (ENSG00000256812)
Protein
Protein identifiers
Calpain-12 — Q6ZSI9 (reviewed: Q6ZSI9)
Alternative names: Calcium-activated neutral proteinase 12
All UniProt accessions (7): Q6ZSI9, M0QXJ6, M0QZ20, M0QZT6, M0R052, M0R0X4, M0R3D7
UniProt curated annotations — full annotation on UniProt →
Function. Calcium-regulated non-lysosomal thiol-protease.
Similarity. Belongs to the peptidase C2 family.
RefSeq proteins (1): NP_653292* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000169 | Pept_cys_AS | Active_site |
| IPR001300 | Peptidase_C2_calpain_cat | Domain |
| IPR002048 | EF_hand_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR022682 | Calpain_domain_III | Domain |
| IPR022683 | Calpain_III | Domain |
| IPR022684 | Calpain_cysteine_protease | Family |
| IPR033883 | C2_III | Domain |
| IPR036213 | Calpain_III_sf | Homologous_superfamily |
| IPR038765 | Papain-like_cys_pep_sf | Homologous_superfamily |
Pfam: PF00648, PF01067
UniProt features (16 total): binding site 5, region of interest 3, active site 3, domain 2, chain 1, sequence variant 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZSI9-F1 | 86.63 | 0.60 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 105; 259; 283
Ligand- & substrate-binding residues (5): 633; 635; 637; 639; 644
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-1474244 | Extracellular matrix organization |
MSigDB gene sets: 71 (showing top):
TGACCTY_ERR1_Q2, GOMF_CYSTEINE_TYPE_PEPTIDASE_ACTIVITY, BACH2_01, TGANTCA_AP1_C, NRF2_Q4, ATF4_Q2, WHN_B, NFE2_01, GOBP_PROTEOLYSIS, ER_Q6_02, GOMF_PEPTIDASE_ACTIVITY, GOMF_CALCIUM_DEPENDENT_CYSTEINE_TYPE_ENDOPEPTIDASE_ACTIVITY, AP1_Q6_01, KRIEG_HYPOXIA_NOT_VIA_KDM3A, RREB1_01
GO Biological Process (1): proteolysis (GO:0006508)
GO Molecular Function (6): calcium-dependent cysteine-type endopeptidase activity (GO:0004198), calcium ion binding (GO:0005509), peptidase activity (GO:0008233), cysteine-type peptidase activity (GO:0008234), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (2): cytoplasm (GO:0005737), endomembrane system (GO:0012505)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| protein metabolic process | 1 |
| cysteine-type endopeptidase activity | 1 |
| metal ion binding | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| peptidase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
889 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CAPN12 | ACTN4 | O43707 | 788 |
| CAPN12 | TMEM244 | Q5VVB8 | 439 |
| CAPN12 | USF3 | Q68DE3 | 433 |
| CAPN12 | CAST | P20810 | 408 |
| CAPN12 | FAM98C | Q17RN3 | 400 |
| CAPN12 | CABP7 | Q86V35 | 386 |
| CAPN12 | RHBDL3 | P58872 | 382 |
| CAPN12 | ASB3 | Q9Y575 | 376 |
| CAPN12 | MTFR1 | Q15390 | 371 |
| CAPN12 | ADGRG7 | Q96K78 | 370 |
| CAPN12 | SARAF | Q96BY9 | 338 |
| CAPN12 | CAAP1 | Q9H8G2 | 336 |
| CAPN12 | CCDC144NL | Q6NUI1 | 323 |
| CAPN12 | MBLAC1 | A4D2B0 | 319 |
| CAPN12 | RIT2 | Q99578 | 315 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KIF3A | KIF3C | psi-mi:“MI:0914”(association) | 0.730 |
| CPLX3 | CIAO1 | psi-mi:“MI:0914”(association) | 0.530 |
| CAPN12 | TCP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CAPN12 | RFC5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PTDSS1 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPN12 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (28): CAPN12 (Proximity Label-MS), CAPN12 (Proximity Label-MS), CAPN12 (Affinity Capture-RNA), CAPN12 (Affinity Capture-MS), INA (Affinity Capture-MS), CAPN12 (Affinity Capture-MS), KIAA0753 (Affinity Capture-MS), DHX40 (Affinity Capture-MS), ORC3 (Affinity Capture-MS), CAPN12 (Affinity Capture-MS), DOCK7 (Affinity Capture-MS), MCMBP (Affinity Capture-MS), KIF20A (Affinity Capture-MS), PPP2R2D (Affinity Capture-MS), KIF2A (Affinity Capture-MS)
ESM2 similar proteins: A0A061IR73, A0A0U1RPR8, A0A7N9VSG0, A7YSY2, D3ZX08, D4A2B7, O15381, O19114, O43542, O43824, O88202, P32794, P40694, P51839, P51840, P52333, P52785, P54777, P55205, Q02846, Q08DH8, Q0VA52, Q13608, Q14CH7, Q1HG60, Q2NKY8, Q3U6U5, Q3UMC0, Q3ZBE0, Q5BJS0, Q5E9L5, Q5JTZ9, Q5PQY6, Q5R607, Q5RCH4, Q6NZB1, Q6ZSI9, Q7L2E3, Q80SX8, Q8NB90
Diamond homologs: A6NHC0, A8MX76, G3V7W1, O08529, O08688, O14815, O15484, O23184, O35350, O35646, O35920, O75808, O88456, O88501, P00789, P04574, P04632, P05044, P06813, P06814, P06815, P07384, P13135, P16259, P17655, P20807, P27398, P27730, P28676, P30626, P34308, P35750, P43367, P43368, P51186, P97571, Q07009, Q11002, Q22036, Q27970
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
266 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 156 |
| Likely benign | 34 |
| Benign | 52 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3293 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:38731101:A:AC | donor_gain | 1.0000 |
| 19:38731102:C:CC | donor_gain | 1.0000 |
| 19:38731103:TCA:T | donor_loss | 1.0000 |
| 19:38731104:CA:C | donor_loss | 1.0000 |
| 19:38731105:A:AC | donor_gain | 1.0000 |
| 19:38731106:C:CA | donor_gain | 1.0000 |
| 19:38731106:CA:C | donor_gain | 1.0000 |
| 19:38731106:CAG:C | donor_gain | 1.0000 |
| 19:38731106:CAGA:C | donor_gain | 1.0000 |
| 19:38731106:CAGAA:C | donor_gain | 1.0000 |
| 19:38731221:AGC:A | acceptor_gain | 1.0000 |
| 19:38731222:GC:G | acceptor_gain | 1.0000 |
| 19:38731223:CC:C | acceptor_gain | 1.0000 |
| 19:38731224:C:CA | acceptor_loss | 1.0000 |
| 19:38731224:C:CC | acceptor_gain | 1.0000 |
| 19:38736109:CA:C | donor_gain | 1.0000 |
| 19:38736109:CACGG:C | donor_gain | 1.0000 |
| 19:38737150:CCTCA:C | donor_loss | 1.0000 |
| 19:38737151:CTCA:C | donor_loss | 1.0000 |
| 19:38737153:CAC:C | donor_loss | 1.0000 |
| 19:38737154:A:C | donor_loss | 1.0000 |
| 19:38737316:T:TA | donor_gain | 1.0000 |
| 19:38737321:AT:A | donor_gain | 1.0000 |
| 19:38737322:T:TA | donor_gain | 1.0000 |
| 19:38737334:T:TA | donor_gain | 1.0000 |
| 19:38740047:TTA:T | donor_loss | 1.0000 |
| 19:38740048:TACC:T | donor_loss | 1.0000 |
| 19:38740049:A:AC | donor_gain | 1.0000 |
| 19:38740049:ACCAG:A | donor_loss | 1.0000 |
| 19:38740050:C:CC | donor_gain | 1.0000 |
AlphaMissense
4683 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:38738275:G:C | F321L | 0.998 |
| 19:38738275:G:T | F321L | 0.998 |
| 19:38738277:A:G | F321L | 0.998 |
| 19:38738335:C:A | W301C | 0.997 |
| 19:38738335:C:G | W301C | 0.997 |
| 19:38738428:A:G | W294R | 0.996 |
| 19:38738428:A:T | W294R | 0.996 |
| 19:38737590:G:C | C338W | 0.995 |
| 19:38738440:A:G | W290R | 0.994 |
| 19:38738440:A:T | W290R | 0.994 |
| 19:38736148:G:C | F515L | 0.993 |
| 19:38736148:G:T | F515L | 0.993 |
| 19:38736150:A:G | F515L | 0.993 |
| 19:38737608:G:C | F332L | 0.993 |
| 19:38737608:G:T | F332L | 0.993 |
| 19:38737610:A:G | F332L | 0.993 |
| 19:38738274:A:G | W322R | 0.993 |
| 19:38738274:A:T | W322R | 0.993 |
| 19:38738438:C:A | W290C | 0.993 |
| 19:38738438:C:G | W290C | 0.993 |
| 19:38737591:C:T | C338Y | 0.992 |
| 19:38738337:A:G | W301R | 0.992 |
| 19:38738337:A:T | W301R | 0.992 |
| 19:38738276:A:G | F321S | 0.991 |
| 19:38738597:A:C | Y261D | 0.991 |
| 19:38738597:A:G | Y261H | 0.990 |
| 19:38743943:A:G | W75R | 0.990 |
| 19:38743943:A:T | W75R | 0.990 |
| 19:38737621:A:G | F328S | 0.989 |
| 19:38738463:C:G | R282P | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000857471 (19:38736112 G>A,C,T), RS1001001659 (19:38745297 G>A), RS1001224188 (19:38742644 G>C), RS1001236862 (19:38735282 A>G), RS1001679661 (19:38732013 A>C), RS1001914346 (19:38735557 G>T), RS1002016641 (19:38733113 T>C), RS1002302451 (19:38731815 C>G), RS1002528764 (19:38744943 T>C), RS1002665962 (19:38744828 T>C,G), RS1002689776 (19:38734773 G>A), RS1003117185 (19:38739558 C>T), RS1003176478 (19:38739508 G>A), RS1003238298 (19:38745802 C>T), RS1003249375 (19:38738023 T>C)
Disease associations
OMIM: gene MIM:608839 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability | Disputed Evidence | Autosomal recessive |
Mondo (1): intellectual disability (MONDO:0001071)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006999_4 | Logical memory (immediate recall) in mild cognitive impairment | 4.000000e-07 |
| GCST010703_256 | Brain morphology (MOSTest) | 8.000000e-14 |
| GCST90002400_285 | Plateletcrit | 2.000000e-16 |
| GCST90002401_265 | Platelet distribution width | 3.000000e-15 |
| GCST90002402_562 | Platelet count | 2.000000e-28 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004874 | memory performance |
| EFO:0004346 | neuroimaging measurement |
| EFO:0007985 | platelet crit |
| EFO:0007984 | platelet component distribution width |
| EFO:0004309 | platelet count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Aflatoxin B1 | decreases methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| sotorasib | decreases expression, affects cotreatment | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| pyrazolo(3,4-d)pyrimidine | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ICG 001 | increases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Carbamazepine | affects expression | 1 |
| Doxorubicin | increases expression | 1 |
| Mustard Gas | increases expression | 1 |
| Pesticides | decreases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Valproic Acid | affects expression | 1 |
| Cyclosporine | increases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
197 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
| NCT02746614 | Not specified | COMPLETED | Psychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability |
| NCT02836405 | Not specified | COMPLETED | TMS for the Investigation of Brain Plasticity in Autism Spectrum Disorders |
Related Atlas pages
- Associated diseases: intellectual disability
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): intellectual disability