CAPN15-AS1

Summary

CAPN15-AS1 (CAPN15 antisense RNA 1, HGNC:58544) is a long non-coding RNA gene on chromosome 16p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58544
Approved symbol	CAPN15-AS1
Name	CAPN15 antisense RNA 1
Location	16p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261691
Ensembl biotype	lncRNA
Entrez	142592832

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000565879

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565879 — 2 exons

Exon	Start	End
ENSE00002607298	547185	547373
ENSE00002627041	553561	553847

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 79.92.

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.92	silver quality
blood	UBERON:0000178	71.93	gold quality
bone marrow cell	CL:0002092	71.63	silver quality
colonic epithelium	UBERON:0000397	70.76	silver quality
liver	UBERON:0002107	70.46	gold quality
skeletal muscle tissue	UBERON:0001134	70.05	gold quality
ganglionic eminence	UBERON:0004023	68.31	gold quality
sural nerve	UBERON:0015488	66.21	gold quality
stomach	UBERON:0000945	65.82	gold quality
prostate gland	UBERON:0002367	65.60	gold quality
tonsil	UBERON:0002372	65.46	gold quality
cortical plate	UBERON:0005343	61.61	silver quality
vermiform appendix	UBERON:0001154	61.47	gold quality
thoracic mammary gland	UBERON:0005200	60.28	gold quality
anterior cingulate cortex	UBERON:0009835	58.48	gold quality
islet of Langerhans	UBERON:0000006	57.28	gold quality
monocyte	CL:0000576	56.73	gold quality
leukocyte	CL:0000738	56.34	gold quality
pancreas	UBERON:0001264	54.80	gold quality
kidney	UBERON:0002113	54.73	silver quality
uterine cervix	UBERON:0000002	54.71	silver quality
lung	UBERON:0002048	54.49	gold quality
gall bladder	UBERON:0002110	52.37	gold quality
muscle of leg	UBERON:0001383	51.05	gold quality
endometrium	UBERON:0001295	50.86	gold quality
heart left ventricle	UBERON:0002084	50.02	gold quality
prefrontal cortex	UBERON:0000451	49.99	gold quality
ovary	UBERON:0000992	49.78	silver quality
gastrocnemius	UBERON:0001388	49.60	gold quality
spleen	UBERON:0002106	49.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.