CAPN9-AS1

Summary

CAPN9-AS1 (CAPN9 antisense RNA 1, HGNC:58238) is a long non-coding RNA gene on chromosome 1q42.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58238
Approved symbol	CAPN9-AS1
Name	CAPN9 antisense RNA 1
Location	1q42.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244137
Ensembl biotype	lncRNA
Entrez	107985359
RNAcentral	URS0000110BFA — lncRNA, 850 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000412344, ENST00000428480, ENST00000452640

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412344 — 2 exons

Exon	Start	End
ENSE00001646437	230710698	230710853
ENSE00001702481	230795113	230795492

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 83.62.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	83.62	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.09	gold quality
liver	UBERON:0002107	76.23	gold quality
rectum	UBERON:0001052	75.47	gold quality
body of stomach	UBERON:0001161	73.68	gold quality
stomach	UBERON:0000945	73.09	gold quality
colonic epithelium	UBERON:0000397	73.02	gold quality
mucosa of stomach	UBERON:0001199	70.77	gold quality
transverse colon	UBERON:0001157	70.60	gold quality
vermiform appendix	UBERON:0001154	68.29	gold quality
skeletal muscle tissue	UBERON:0001134	67.91	gold quality
small intestine	UBERON:0002108	67.56	gold quality
small intestine Peyer’s patch	UBERON:0003454	67.15	gold quality
prefrontal cortex	UBERON:0000451	66.81	gold quality
right lung	UBERON:0002167	65.83	gold quality
minor salivary gland	UBERON:0001830	65.76	gold quality
saliva-secreting gland	UBERON:0001044	65.48	gold quality
duodenum	UBERON:0002114	65.43	gold quality
fundus of stomach	UBERON:0001160	65.27	gold quality
ventricular zone	UBERON:0003053	65.16	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.02	gold quality
bone marrow	UBERON:0002371	64.81	gold quality
intestine	UBERON:0000160	64.29	gold quality
primary visual cortex	UBERON:0002436	63.46	gold quality
sural nerve	UBERON:0015488	63.10	gold quality
colon	UBERON:0001155	62.81	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	60.07	gold quality
upper lobe of left lung	UBERON:0008952	59.31	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.28	gold quality
lung	UBERON:0002048	58.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.