CAPSL-DT

Summary

CAPSL-DT (CAPSL divergent transcript, HGNC:56266) is a long non-coding RNA gene on chromosome 5p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56266
Approved symbol	CAPSL-DT
Name	CAPSL divergent transcript
Location	5p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-IL7R-1
Ensembl gene	ENSG00000249748
Ensembl biotype	lncRNA
Entrez	100506406
RNAcentral	URS000075E6E5 — lncRNA, 406 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000503269, ENST00000803083

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503269 — 2 exons

Exon	Start	End
ENSE00004193134	35939723	35940013
ENSE00004193136	35938788	35938924

Expression profiles

Bgee: expression breadth broad, 39 present calls, max score 94.68.

Top tissues by expression

155 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.68	gold quality
buccal mucosa cell	CL:0002336	89.84	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	86.54	gold quality
sperm	CL:0000019	85.85	gold quality
cardiac muscle of right atrium	UBERON:0003379	83.80	gold quality
kidney epithelium	UBERON:0004819	82.65	gold quality
nasal cavity epithelium	UBERON:0005384	81.24	gold quality
islet of Langerhans	UBERON:0000006	77.07	gold quality
vastus lateralis	UBERON:0001379	76.31	gold quality
quadriceps femoris	UBERON:0001377	75.49	gold quality
epithelial cell of pancreas	CL:0000083	74.94	gold quality
gingival epithelium	UBERON:0001949	74.76	gold quality
left testis	UBERON:0004533	74.68	gold quality
right testis	UBERON:0004534	74.18	gold quality
testis	UBERON:0000473	73.54	gold quality
oocyte	CL:0000023	73.12	gold quality
skeletal muscle tissue	UBERON:0001134	73.04	gold quality
superficial temporal artery	UBERON:0001614	72.36	gold quality
bone marrow	UBERON:0002371	72.06	gold quality
prefrontal cortex	UBERON:0000451	71.50	gold quality
secondary oocyte	CL:0000655	71.26	gold quality
gingiva	UBERON:0001828	71.00	gold quality
upper arm skin	UBERON:0004263	69.28	gold quality
tonsil	UBERON:0002372	68.96	gold quality
coronary artery	UBERON:0001621	68.80	gold quality
nasal cavity mucosa	UBERON:0001826	68.57	gold quality
trabecular bone tissue	UBERON:0002483	68.03	gold quality
kidney	UBERON:0002113	67.93	silver quality
saphenous vein	UBERON:0007318	67.71	gold quality
superior surface of tongue	UBERON:0007371	67.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.