CARHSP1-DT

Summary

CARHSP1-DT (CARHSP1 divergent transcript, HGNC:55361) is a long non-coding RNA gene on chromosome 16p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55361
Approved symbol	CARHSP1-DT
Name	CARHSP1 divergent transcript
Location	16p13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261481
Ensembl biotype	lncRNA
Entrez	119545623
RNAcentral	URS00026A23C3 — lncRNA, 475 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000570290

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000570290 — 2 exons

Exon	Start	End
ENSE00004078801	8869613	8870043
ENSE00004078802	8869167	8869328

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 76.42.

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	76.42	silver quality
liver	UBERON:0002107	69.33	gold quality
right lobe of liver	UBERON:0001114	68.86	gold quality
calcaneal tendon	UBERON:0003701	65.68	gold quality
skeletal muscle tissue	UBERON:0001134	63.58	gold quality
right adrenal gland	UBERON:0001233	62.68	gold quality
lymph node	UBERON:0000029	58.92	gold quality
adrenal gland	UBERON:0002369	58.16	gold quality
bone marrow	UBERON:0002371	57.81	silver quality
right adrenal gland cortex	UBERON:0035827	57.08	gold quality
left adrenal gland	UBERON:0001234	56.74	gold quality
left adrenal gland cortex	UBERON:0035825	56.13	gold quality
prefrontal cortex	UBERON:0000451	54.88	gold quality
duodenum	UBERON:0002114	54.02	gold quality
primary visual cortex	UBERON:0002436	53.90	gold quality
blood	UBERON:0000178	52.55	gold quality
monocyte	CL:0000576	52.11	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.67	gold quality
superior frontal gyrus	UBERON:0002661	50.98	gold quality
adult mammalian kidney	UBERON:0000082	50.91	gold quality
fundus of stomach	UBERON:0001160	50.66	gold quality
islet of Langerhans	UBERON:0000006	50.53	gold quality
gastrocnemius	UBERON:0001388	49.45	gold quality
Brodmann (1909) area 9	UBERON:0013540	49.23	gold quality
metanephros cortex	UBERON:0010533	48.77	gold quality
cerebellum	UBERON:0002037	48.64	silver quality
cerebellar cortex	UBERON:0002129	48.61	silver quality
cerebellar hemisphere	UBERON:0002245	48.56	silver quality
frontal cortex	UBERON:0001870	48.24	gold quality
endometrium	UBERON:0001295	48.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.