CARNMT1-AS1

Summary

CARNMT1-AS1 (CARNMT1 antisense RNA 1, HGNC:51188) is a long non-coding RNA gene on chromosome 9q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51188
Approved symbol	CARNMT1-AS1
Name	CARNMT1 antisense RNA 1
Location	9q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000203321
Ensembl biotype	lncRNA
Entrez	101927380
RNAcentral	URS000075E504 — lncRNA, 1811 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000455609, ENST00000817335, ENST00000817336, ENST00000817337, ENST00000817338, ENST00000817339, ENST00000817340, ENST00000817341

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455609 — 5 exons

Exon	Start	End
ENSE00001603999	74991165	74991285
ENSE00001627114	74991621	74991674
ENSE00001769765	74975862	74975959
ENSE00004221018	74995998	74996579
ENSE00004221021	74952968	74953117

Expression profiles

Bgee: expression breadth ubiquitous, 148 present calls, max score 83.58.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.58	gold quality
ganglionic eminence	UBERON:0004023	66.80	gold quality
cortical plate	UBERON:0005343	65.36	gold quality
buccal mucosa cell	CL:0002336	64.48	silver quality
ventricular zone	UBERON:0003053	63.59	gold quality
adrenal tissue	UBERON:0018303	61.90	gold quality
stromal cell of endometrium	CL:0002255	60.33	gold quality
calcaneal tendon	UBERON:0003701	58.17	gold quality
monocyte	CL:0000576	54.56	gold quality
corpus callosum	UBERON:0002336	53.75	gold quality
lower esophagus mucosa	UBERON:0035834	53.72	gold quality
vermiform appendix	UBERON:0001154	53.29	gold quality
islet of Langerhans	UBERON:0000006	52.52	gold quality
pancreas	UBERON:0001264	52.24	gold quality
body of pancreas	UBERON:0001150	52.04	gold quality
lymph node	UBERON:0000029	51.72	gold quality
right ovary	UBERON:0002118	51.37	gold quality
prefrontal cortex	UBERON:0000451	51.35	gold quality
gall bladder	UBERON:0002110	51.29	gold quality
upper leg skin	UBERON:0004262	51.25	gold quality
skin of abdomen	UBERON:0001416	50.56	gold quality
right hemisphere of cerebellum	UBERON:0014890	50.46	gold quality
mucosa of transverse colon	UBERON:0004991	50.42	gold quality
rectum	UBERON:0001052	50.27	gold quality
skin of leg	UBERON:0001511	50.24	gold quality
tendon	UBERON:0000043	50.22	silver quality
left ovary	UBERON:0002119	50.08	gold quality
smooth muscle tissue	UBERON:0001135	50.07	gold quality
esophagus mucosa	UBERON:0002469	49.97	gold quality
caecum	UBERON:0001153	49.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.67

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.