CATED

Summary

CATED (CATED platinum resistance associated lncRNA regulator of DHX36, HGNC:58685) is a long non-coding RNA gene on chromosome 19q13.31.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58685
Approved symbol	CATED
Name	CATED platinum resistance associated lncRNA regulator of DHX36
Location	19q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267058
Entrez	100505715

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 91.89.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.89	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.86	gold quality
stromal cell of endometrium	CL:0002255	78.44	gold quality
cortical plate	UBERON:0005343	77.03	gold quality
ventricular zone	UBERON:0003053	73.41	gold quality
bone marrow cell	CL:0002092	73.04	silver quality
colonic epithelium	UBERON:0000397	72.59	gold quality
apex of heart	UBERON:0002098	72.18	gold quality
ganglionic eminence	UBERON:0004023	72.15	gold quality
islet of Langerhans	UBERON:0000006	70.45	gold quality
heart left ventricle	UBERON:0002084	70.17	gold quality
right atrium auricular region	UBERON:0006631	70.17	gold quality
smooth muscle tissue	UBERON:0001135	69.66	gold quality
heart	UBERON:0000948	69.57	gold quality
superior frontal gyrus	UBERON:0002661	69.51	gold quality
right uterine tube	UBERON:0001302	69.37	gold quality
urinary bladder	UBERON:0001255	68.02	gold quality
prefrontal cortex	UBERON:0000451	68.00	gold quality
right coronary artery	UBERON:0001625	67.44	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	66.79	gold quality
frontal cortex	UBERON:0001870	66.64	gold quality
fallopian tube	UBERON:0003889	66.53	gold quality
ovary	UBERON:0000992	66.35	gold quality
left ovary	UBERON:0002119	66.31	gold quality
gastrocnemius	UBERON:0001388	66.07	gold quality
pituitary gland	UBERON:0000007	66.03	gold quality
nucleus accumbens	UBERON:0001882	65.91	gold quality
muscle of leg	UBERON:0001383	65.90	gold quality
cerebral cortex	UBERON:0000956	65.46	gold quality
bone marrow	UBERON:0002371	65.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000057905 (19:43896839 G>A,C,T), RS1000357387 (19:43896987 C>T), RS1000731023 (19:43901968 T>A,G), RS1001059008 (19:43895044 A>G), RS1001371656 (19:43902190 G>A), RS1001521787 (19:43898242 A>T), RS1001651281 (19:43898041 A>C), RS1002808289 (19:43903278 A>C), RS1002925447 (19:43899651 T>C,G), RS1003285194 (19:43899354 G>A,T), RS1003382519 (19:43892398 G>A), RS1003396888 (19:43900309 C>A), RS1003501361 (19:43892674 T>G), RS1003757490 (19:43891766 C>G,T), RS1004013815 (19:43899993 C>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.