CAV1
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Summary
CAV1 (caveolin 1, HGNC:1527) is a protein-coding gene on chromosome 7q31.2, encoding Caveolin-1 (Q03135). May act as a scaffolding protein within caveolar membranes.
The scaffolding protein encoded by this gene is the main component of the caveolae plasma membranes found in most cell types. The protein links integrin subunits to the tyrosine kinase FYN, an initiating step in coupling integrins to the Ras-ERK pathway and promoting cell cycle progression. The gene is a tumor suppressor gene candidate and a negative regulator of the Ras-p42/44 mitogen-activated kinase cascade. Caveolin 1 and caveolin 2 are located next to each other on chromosome 7 and express colocalizing proteins that form a stable hetero-oligomeric complex. Mutations in this gene have been associated with Berardinelli-Seip congenital lipodystrophy. Alternatively spliced transcripts encode alpha and beta isoforms of caveolin 1.
Source: NCBI Gene 857 — RefSeq curated summary.
At a glance
- Gene–disease (curated): pulmonary arterial hypertension (Definitive, ClinGen) — +7 more curated relationships
- GWAS associations: 71
- Clinical variants (ClinVar): 199 total — 10 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 106
- Druggable target: yes
- MANE Select transcript:
NM_001753
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1527 |
| Approved symbol | CAV1 |
| Name | caveolin 1 |
| Location | 7q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000105974 |
| Ensembl biotype | protein_coding |
| OMIM | 601047 |
| Entrez | 857 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000341049, ENST00000393467, ENST00000393468, ENST00000393470, ENST00000405348, ENST00000451122, ENST00000456473, ENST00000489856, ENST00000614113, ENST00000933877
RefSeq mRNA: 4 — MANE Select: NM_001753
NM_001172895, NM_001172896, NM_001172897, NM_001753
CCDS: CCDS55156, CCDS5767
Canonical transcript exons
ENST00000341049 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001085899 | 116525036 | 116525092 |
| ENSE00001559093 | 116558946 | 116561179 |
| ENSE00003640071 | 116526525 | 116526689 |
Expression profiles
Bgee: expression breadth ubiquitous, 287 present calls, max score 99.78.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 315.8302 / max 4176.3468, expressed in 1507 samples.
FANTOM5 promoters (21 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80631 | 169.1054 | 1474 |
| 80622 | 72.9060 | 1295 |
| 80623 | 59.2067 | 1246 |
| 80624 | 2.9747 | 1009 |
| 80629 | 2.0041 | 746 |
| 80645 | 1.5530 | 657 |
| 80625 | 1.0957 | 572 |
| 80646 | 0.9567 | 452 |
| 80640 | 0.8619 | 522 |
| 80628 | 0.8250 | 453 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| parietal pleura | UBERON:0002400 | 99.78 | gold quality |
| lower lobe of lung | UBERON:0008949 | 99.78 | gold quality |
| pleura | UBERON:0000977 | 99.66 | gold quality |
| skin of hip | UBERON:0001554 | 99.62 | gold quality |
| endometrium epithelium | UBERON:0004811 | 99.62 | gold quality |
| synovial joint | UBERON:0002217 | 99.56 | gold quality |
| visceral pleura | UBERON:0002401 | 99.52 | gold quality |
| adipose tissue | UBERON:0001013 | 99.45 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 99.44 | gold quality |
| right lung | UBERON:0002167 | 99.43 | gold quality |
| blood vessel layer | UBERON:0004797 | 99.43 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.39 | gold quality |
| vena cava | UBERON:0004087 | 99.39 | gold quality |
| urethra | UBERON:0000057 | 99.37 | gold quality |
| saphenous vein | UBERON:0007318 | 99.36 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.34 | gold quality |
| connective tissue | UBERON:0002384 | 99.32 | gold quality |
| adult organism | UBERON:0007023 | 99.31 | gold quality |
| cauda epididymis | UBERON:0004360 | 99.29 | gold quality |
| lung | UBERON:0002048 | 99.27 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.26 | gold quality |
| superficial temporal artery | UBERON:0001614 | 99.25 | gold quality |
| right coronary artery | UBERON:0001625 | 99.19 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.17 | gold quality |
| mammary duct | UBERON:0001765 | 99.16 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 99.16 | gold quality |
| popliteal artery | UBERON:0002250 | 99.15 | gold quality |
| tibial artery | UBERON:0007610 | 99.15 | gold quality |
| peritoneum | UBERON:0002358 | 99.13 | gold quality |
| omental fat pad | UBERON:0010414 | 99.13 | gold quality |
Single-cell (SCXA)
Detected in 35 experiment(s), a significant marker in 34.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-130148 | yes | 5530.87 |
| E-MTAB-6653 | yes | 4628.21 |
| E-HCAD-15 | yes | 4028.47 |
| E-HCAD-24 | yes | 3966.80 |
| E-GEOD-124263 | yes | 3014.61 |
| E-MTAB-8322 | yes | 2485.50 |
| E-MTAB-6701 | yes | 2395.77 |
| E-MTAB-8221 | yes | 2380.50 |
| E-MTAB-10885 | yes | 2376.52 |
| E-MTAB-8410 | yes | 2183.11 |
| E-MTAB-9841 | yes | 2107.91 |
| E-MTAB-10855 | yes | 1853.22 |
| E-MTAB-10287 | yes | 1757.10 |
| E-GEOD-135922 | yes | 1387.61 |
| E-CURD-46 | yes | 1360.37 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| GJA1 | Activation |
Upstream regulators (CollecTRI, top): AR, ATF3, CUX1, E2F1, E2F4, EGR1, ELK3, ESR1, ESR2, ETV4, ETV5, EWSR1, FOXO1, FOXO3, GATA6, KDM5B, KLF11, MYC, MYCN, NCOA2, NFE2L2, NFKB, NR3C1, PPARA, PPARG, RELA, SKIL, SP1, SREBF1, STAT3, TFDP1, TP53, ZNF91
miRNA regulators (miRDB)
130 targeting CAV1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-3682-5P | 99.93 | 67.97 | 1163 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-12133 | 99.92 | 71.82 | 2006 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-1271-5P | 99.91 | 71.99 | 1972 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
Literature-anchored findings (GeneRIF, showing 40)
- Caveolin-1 expression enhances endothelial capillary tubule formation (PMID:11748236)
- CAV1 was found in liver endothelial cells and in Kupffer cells (liver non-parenchymal cells). (PMID:11845324)
- forms a cholesterol complex and transports it from the endoplasmic reticulum to the cell membrane; activates signal transduction molecules (PMID:11915322)
- over-expression is associated with lymph node metastasis and worse prognosis after surgery in esophageal squamous cell carcinoma (PMID:11920460)
- Neu3 functions as a caveolin-related signaling molecule within caveolin-rich microdomains (PMID:12011038)
- Data show that ER alpha and not ER beta silences caveolin-1/-2 expression in an epigenetic fashion in neuronal cells. (PMID:12138116)
- Some protein tyrosine phosphatases form molecular complexes with caveolin-1 in lipid rafts (PMID:12176037)
- regulation of expression and secretion by a protein kinase c epsilon signaling pathway in human prostate cancer cells (PMID:12185081)
- data show that coexpression of caveolin can markedly inhibit expression of HIV proviral DNA and establish that the inhibition is mediated by the hydrophobic, membrane-associated domain (PMID:12186899)
- Data show that IL-6/raft/STAT3 signaling is a chaperoned pathway that involves caveolin-1 and HSP90 as accessory proteins and suggest a mechanism for the preservation of this signaling during fever. (PMID:12235142)
- both the caveolin-1/EGFR association and EGF-induced tyrosine phosphorylation of caveolin-1 are modulated by ganglioside GM3 (PMID:12354760)
- Endostatin associates with integrin alpha5beta1 and caveolin-1, and activates Src via a tyrosyl phosphatase-dependent pathway in human endothelial cells. (PMID:12359771)
- data clearly implicate loss of functional Cav-1 in the pathogenesis of mammary epithelial cell hyperplasia (PMID:12368209)
- Caveolin-1 phosphorylation in human squamous cell carcinoma is dependent on ErbB1 expression and Src activation. (PMID:12372346)
- In the cerebral cortex caveolin-1 is expressed by all the cell types that form the vascular wall, endothelial cells, pericytes, and vascular astrocytes in vivo. (PMID:12401329)
- Up-regulated caveolin-1 accentuates the metastasis capability of lung adenocarcinoma by inducing filopodia formation. (PMID:12414512)
- basal and SR-BI-stimulated free cholesterol efflux to HDL and liposomes and SR-BI-mediated selective uptake of HDL cholesteryl ester are not affected by caveolin-1 expression (PMID:12562842)
- Caveolae plays a role in signal-transducing function of cardiac Na+/K+-ATPase. (PMID:12606314)
- caveolin-1 may play a role in lamellar granule assembly, trafficking, and/or function. (PMID:12648214)
- interacts with endothlin b receptor (PMID:12694195)
- ERalpha co-activator caveolin is negatively regulated by the steroid receptor itself (PMID:12711000)
- Caveolin-1 may modify the biosynthetic pathway of sugar chains via the regulation of the intra-Golgi subcompartment localization of N-acetylglucosaminyltransferase III (PMID:12716887)
- caveolin has a role in recovery from cell sensecence (PMID:12730243)
- Caveolin-1 contributes to assembly of store-operated Ca2+ influx channels by regulating plasma membrane localization of TRPC1. (PMID:12732636)
- Caveolin-1 expression is an independent positive prognostic factor for survival in extrahepatic bile duct carcinoma. (PMID:12737162)
- A statistically significant difference in the expression of caveolin-1 between oncocytoma with a mean labeling index of 91.7 and other malignant renal tumors with a lower mean labeling index possibly implicates this peptide in oncocytoma pathogenesis. (PMID:12810205)
- PPARgamma & caveolin-1 may coexist in a complex. PPARgamma participates in the regulation of caveolin gene expression in human carcinoma cells. Caveolin-1 may mediate some of the phenotypic changes induced by PPAR-G in cancer cells. (PMID:12813462)
- Caveolin-1 is an inhibitor of platelet-derived growth factor (PDGF) proliferative responses and might be capable of transforming PDGF-induced proliferative signals into death signals. (PMID:12816877)
- CAV-1 gene can be inactivated through mutations and does not play a role in the development of cervical cancer (PMID:12888893)
- cytoplasmic overexpression of caveolin-1 predicts a poor prognosis in renal cell carcinoma (PMID:14612902)
- Akt activities are largely responsible for cav-1-mediated cell survival (PMID:14645548)
- caveolin-1 has a role in mediating astrocyte responses to MCP-1 (PMID:14660607)
- negative regulation of caveolin-1 plays a central role in the complex cellular changes leading to metastasis (PMID:14706341)
- caveolin-1 associates with CD147, in a complex distinct from CD147-alpha(3) integrin complexes, thereby diminishing both CD147 clustering and CD147-dependent MMP-1-inducing activity (PMID:14707126)
- inactivation of Caveolin-1 by a mutation or by reduced expression may play a role in the pathogenesis of oral cancer (PMID:14719121)
- overexpression of caveolin-1 in hepatic cells stimulates cholesterol efflux by enhancing transfer of cholesterol to cholesterol-rich domains in the plasma membrane. (PMID:14729661)
- Ouabain assembles signaling cascades through the caveolar Na+/K+-ATPase. (PMID:14963033)
- Cav-1 haploinsufficiency in human breast epithelial cells can lead to partial transformation. (PMID:14981899)
- Nitric oxide concentrations could impact on capillary formation via a combination of direct effects on MMP activation and by altering the distribution or abundance of Cav-1 in tumor angiogenesis. (PMID:15064242)
- caveolin-1 is overexpressed in experimental colon adenocarcinoma by comparison to adjacent normal mucosa, and its expression in human colon cancer cells is directly associated with the growth rate (PMID:15069532)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cav1 | ENSDARG00000103747 |
| mus_musculus | Cav1 | ENSMUSG00000007655 |
| rattus_norvegicus | Cav1 | ENSRNOG00000056836 |
| caenorhabditis_elegans | WBGENE00000301 | |
| caenorhabditis_elegans | WBGENE00000302 |
Paralogs (2): CAV2 (ENSG00000105971), CAV3 (ENSG00000182533)
Protein
Protein identifiers
Caveolin-1 — Q03135 (reviewed: Q03135)
All UniProt accessions (6): Q03135, A0A7P0YWJ6, C9JKI3, E9PCT5, F8WDM7, Q2TNI1
UniProt curated annotations — full annotation on UniProt →
Function. May act as a scaffolding protein within caveolar membranes. Forms a stable heterooligomeric complex with CAV2 that targets to lipid rafts and drives caveolae formation. Mediates the recruitment of CAVIN proteins (CAVIN1/2/3/4) to the caveolae. Interacts directly with G-protein alpha subunits and can functionally regulate their activity. Involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Its binding to DPP4 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Recruits CTNNB1 to caveolar membranes and may regulate CTNNB1-mediated signaling through the Wnt pathway. Negatively regulates TGFB1-mediated activation of SMAD2/3 by mediating the internalization of TGFBR1 from membrane rafts leading to its subsequent degradation. Binds 20(S)-hydroxycholesterol (20(S)-OHC).
Subunit / interactions. Homooligomer. Interacts with GLIPR2. Interacts with NOSTRIN. Interacts with SNAP25 and STX1A. Interacts (via the N-terminus) with DPP4; the interaction is direct. Interacts with CTNNB1, CDH1 and JUP. Interacts with PACSIN2; this interaction induces membrane tubulation. Interacts with SLC7A9. Interacts with BMX and BTK. Interacts with TGFBR1. Interacts with CAVIN3 (via leucine-zipper domain) in a cholesterol-sensitive manner. Interacts with CAVIN1. Interacts with EHD2 in a cholesterol-dependent manner. Forms a ternary complex with UBXN6 and VCP; mediates CAV1 targeting to lysosomes for degradation. Interacts with ABCG1; this interaction regulates ABCG1-mediated cholesterol efflux. Interacts with NEU3; this interaction enhances NEU3 sialidase activity within caveola. Interacts (via C-terminus) with SPRY1, SPRY2 (via C-terminus), SPRY3, and SPRY4. Interacts with IGFBP5; this interaction allows trafficking of IGFBP5 from the plasma membrane to the nucleus. (Microbial infection) Interacts with rotavirus A NSP4. (Microbial infection) Interacts with human respiratory syncytial virus (HRSV) matrix protein; this interaction probably facilitates viral budding.
Subcellular location. Golgi apparatus membrane. Cell membrane. Membrane. Caveola. Membrane raft. Golgi apparatus. trans-Golgi network. Cytoplasm.
Tissue specificity. Skeletal muscle, liver, stomach, lung, kidney and heart (at protein level). Expressed in the brain.
Post-translational modifications. Ubiquitinated. Undergo monoubiquitination and multi- and/or polyubiquitination. Monoubiquitination of N-terminal lysines promotes integration in a ternary complex with UBXN6 and VCP which promotes oligomeric CAV1 targeting to lysosomes for degradation. Ubiquitinated by ZNRF1; leading to degradation and modulation of the TLR4-mediated immune response. The initiator methionine for isoform 2 is removed during or just after translation. The new N-terminal amino acid is then N-acetylated. Phosphorylated at Tyr-14 by ABL1 in response to oxidative stress.
Disease relevance. Lipodystrophy, congenital generalized, 3 (CGL3) [MIM:612526] A form of congenital generalized lipodystrophy, a metabolic disorder characterized by a near complete absence of adipose tissue, extreme insulin resistance, hypertriglyceridemia, hepatic steatosis and diabetes mellitus. CGL3 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Pulmonary hypertension, primary, 3 (PPH3) [MIM:615343] A rare disorder characterized by plexiform lesions of proliferating endothelial cells in pulmonary arterioles. The lesions lead to elevated pulmonary arterial pression, right ventricular failure, and death. The disease can occur from infancy throughout life and it has a mean age at onset of 36 years. Penetrance is reduced. Although familial pulmonary hypertension is rare, cases secondary to known etiologies are more common and include those associated with the appetite-suppressant drugs. The disease is caused by variants affecting the gene represented in this entry. Lipodystrophy, familial partial, 7 (FPLD7) [MIM:606721] A form of partial lipodystrophy, a disorder characterized by abnormal subcutaneous fat distribution. Affected individuals manifest a gradual loss of subcutaneous adipose tissue in various parts of the body, accompanied by an accumulation of adipose tissue in the face and neck in some cases causing a double chin, fat neck, or cushingoid appearance. FPLD7 is an autosomal dominant form with a variable phenotype. Some patients manifest congenital cataracts and neurodegeneration leading to cerebellar and spinal cord dysfunction. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the caveolin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q03135-1 | 1 | yes |
| Q03135-2 | 2 |
RefSeq proteins (4): NP_001166366, NP_001166367, NP_001166368, NP_001744* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001612 | Caveolin | Family |
| IPR018361 | Caveolin_CS | Conserved_site |
Pfam: PF01146
UniProt features (44 total): modified residue 10, helix 7, cross-link 6, region of interest 5, lipid moiety-binding region 3, initiator methionine 2, topological domain 2, sequence conflict 2, strand 2, chain 1, splice variant 1, sequence variant 1, mutagenesis site 1, intramembrane region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7SC0 | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q03135-F1 | 78.60 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (19): 2, 2, 5, 6, 9, 14, 25, 37, 133, 143, 156, 5, 26, 30, 39, 47, 57, 2, 6
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 39 | resistance to znrf1-mediated degradation. |
Function
Pathways and Gene Ontology
Reactome pathways
56 pathways
| ID | Pathway |
|---|---|
| R-HSA-163560 | Triglyceride catabolism |
| R-HSA-203615 | eNOS activation |
| R-HSA-203641 | NOSTRIN mediated eNOS trafficking |
| R-HSA-209968 | Thyroxine biosynthesis |
| R-HSA-210991 | Basigin interactions |
| R-HSA-4641262 | Disassembly of the destruction complex and recruitment of AXIN to the membrane |
| R-HSA-5218920 | VEGFR2 mediated vascular permeability |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9009391 | Extra-nuclear estrogen signaling |
| R-HSA-9013026 | RHOB GTPase cycle |
| R-HSA-9013106 | RHOC GTPase cycle |
| R-HSA-9013148 | CDC42 GTPase cycle |
| R-HSA-9013149 | RAC1 GTPase cycle |
| R-HSA-9013404 | RAC2 GTPase cycle |
| R-HSA-9013405 | RHOD GTPase cycle |
| R-HSA-9013406 | RHOQ GTPase cycle |
| R-HSA-9013407 | RHOH GTPase cycle |
| R-HSA-9013408 | RHOG GTPase cycle |
| R-HSA-9013409 | RHOJ GTPase cycle |
| R-HSA-9013423 | RAC3 GTPase cycle |
| R-HSA-9035034 | RHOF GTPase cycle |
| R-HSA-9617828 | FOXO-mediated transcription of cell cycle genes |
| R-HSA-9696264 | RND3 GTPase cycle |
| R-HSA-9696270 | RND2 GTPase cycle |
| R-HSA-9696273 | RND1 GTPase cycle |
| R-HSA-9735871 | SARS-CoV-1 targets host intracellular signalling and regulatory pathways |
| R-HSA-9755779 | SARS-CoV-2 targets host intracellular signalling and regulatory pathways |
| R-HSA-109582 | Hemostasis |
| R-HSA-1430728 | Metabolism |
| R-HSA-162582 | Signal Transduction |
MSigDB gene sets: 1097 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, REACTOME_TRIGLYCERIDE_CATABOLISM, GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION, GOBP_POSITIVE_REGULATION_OF_CALCIUM_ION_TRANSPORT, WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, GOBP_REGULATION_OF_CELL_ACTIVATION, VERHAAK_AML_WITH_NPM1_MUTATED_DN, MODULE_52, GOBP_MEMBRANE_DEPOLARIZATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, ZHAN_LATE_DIFFERENTIATION_GENES_UP, GOBP_MAMMARY_GLAND_MORPHOGENESIS
GO Biological Process (99): negative regulation of transcription by RNA polymerase II (GO:0000122), MAPK cascade (GO:0000165), angiogenesis (GO:0001525), vasculogenesis (GO:0001570), response to hypoxia (GO:0001666), endothelial cell proliferation (GO:0001935), negative regulation of endothelial cell proliferation (GO:0001937), negative regulation of cytokine-mediated signaling pathway (GO:0001960), glandular epithelial cell differentiation (GO:0002067), response to ischemia (GO:0002931), regulation of the force of heart contraction by chemical signal (GO:0003057), triglyceride metabolic process (GO:0006641), nitric oxide biosynthetic process (GO:0006809), calcium ion transport (GO:0006816), intracellular calcium ion homeostasis (GO:0006874), regulation of smooth muscle contraction (GO:0006940), skeletal muscle tissue development (GO:0007519), lactation (GO:0007595), intracellular protein localization (GO:0008104), cellular response to starvation (GO:0009267), response to bacterium (GO:0009617), positive regulation of calcium ion transport into cytosol (GO:0010524), post-transcriptional regulation of gene expression (GO:0010608), positive regulation of gene expression (GO:0010628), positive regulation of cholesterol efflux (GO:0010875), protein transport (GO:0015031), vesicle organization (GO:0016050), receptor-mediated endocytosis of virus by host cell (GO:0019065), regulation of fatty acid metabolic process (GO:0019217), cytokine-mediated signaling pathway (GO:0019221), lipid storage (GO:0019915), cell differentiation (GO:0030154), regulation of blood coagulation (GO:0030193), cholesterol transport (GO:0030301), positive regulation of cell migration (GO:0030335), negative regulation of BMP signaling pathway (GO:0030514), negative regulation of epithelial cell differentiation (GO:0030857), mammary gland development (GO:0030879), T cell costimulation (GO:0031295), negative regulation of protein ubiquitination (GO:0031397)
GO Molecular Function (21): signaling receptor binding (GO:0005102), patched binding (GO:0005113), oxysterol binding (GO:0008142), cholesterol binding (GO:0015485), peptidase activator activity (GO:0016504), enzyme binding (GO:0019899), protein kinase binding (GO:0019901), protein tyrosine kinase inhibitor activity (GO:0030292), protein-macromolecule adaptor activity (GO:0030674), small GTPase binding (GO:0031267), nitric-oxide synthase inhibitor activity (GO:0036487), identical protein binding (GO:0042802), transmembrane transporter binding (GO:0044325), protein-containing complex binding (GO:0044877), protein heterodimerization activity (GO:0046982), nitric-oxide synthase binding (GO:0050998), ATPase binding (GO:0051117), molecular adaptor activity (GO:0060090), inward rectifier potassium channel inhibitor activity (GO:0070320), protein sequestering activity (GO:0140311), protein binding (GO:0005515)
GO Cellular Component (22): Golgi membrane (GO:0000139), acrosomal membrane (GO:0002080), caveolar macromolecular signaling complex (GO:0002095), endosome (GO:0005768), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), Golgi apparatus (GO:0005794), lipid droplet (GO:0005811), plasma membrane (GO:0005886), caveola (GO:0005901), focal adhesion (GO:0005925), cilium (GO:0005929), cell cortex (GO:0005938), membrane (GO:0016020), basolateral plasma membrane (GO:0016323), apical plasma membrane (GO:0016324), endocytic vesicle membrane (GO:0030666), cytoplasmic vesicle (GO:0031410), early endosome membrane (GO:0031901), protein-containing complex (GO:0032991), membrane raft (GO:0045121), perinuclear region of cytoplasm (GO:0048471)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 12 |
| Metabolism of nitric oxide: NOS3 activation and regulation | 2 |
| Triglyceride metabolism | 1 |
| Metabolism of amine-derived hormones | 1 |
| Cell surface interactions at the vascular wall | 1 |
| TCF dependent signaling in response to WNT | 1 |
| VEGFA-VEGFR2 Pathway | 1 |
| ESR-mediated signaling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 6 |
| cytoplasm | 4 |
| endomembrane system | 3 |
| blood vessel morphogenesis | 2 |
| response to stress | 2 |
| sterol binding | 2 |
| binding | 2 |
| enzyme binding | 2 |
| bounding membrane of organelle | 2 |
| intracellular membrane-bounded organelle | 2 |
| cell periphery | 2 |
| plasma membrane region | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| intracellular signaling cassette | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cell differentiation | 1 |
| response to decreased oxygen levels | 1 |
| epithelial cell proliferation | 1 |
| endothelial cell proliferation | 1 |
| regulation of endothelial cell proliferation | 1 |
| negative regulation of epithelial cell proliferation | 1 |
| regulation of cytokine-mediated signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| cytokine-mediated signaling pathway | 1 |
| negative regulation of response to cytokine stimulus | 1 |
| columnar/cuboidal epithelial cell differentiation | 1 |
| regulation of the force of heart contraction | 1 |
| acylglycerol metabolic process | 1 |
| biosynthetic process | 1 |
| nitric oxide metabolic process | 1 |
| metal ion transport | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| regulation of muscle contraction | 1 |
| smooth muscle contraction | 1 |
| striated muscle tissue development | 1 |
| skeletal muscle organ development | 1 |
| body fluid secretion | 1 |
Protein interactions and networks
STRING
5352 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CAV1 | CAVIN1 | Q6NZI2 | 997 |
| CAV1 | NOS3 | P29474 | 995 |
| CAV1 | SRC | P12931 | 994 |
| CAV1 | ESR1 | P03372 | 992 |
| CAV1 | DPP4 | P27487 | 991 |
| CAV1 | EGFR | P00533 | 987 |
| CAV1 | CAV2 | P51636 | 985 |
| CAV1 | CALML3 | P27482 | 981 |
| CAV1 | CALML5 | Q9NZT1 | 981 |
| CAV1 | CALML6 | Q8TD86 | 979 |
| CAV1 | CALML4 | Q96GE6 | 979 |
| CAV1 | BSG | P35613 | 966 |
| CAV1 | HRAS | P01112 | 965 |
| CAV1 | IGF1R | P08069 | 963 |
| CAV1 | CALM1 | P02593 | 960 |
IntAct
320 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PAK1 | RAC1 | psi-mi:“MI:0914”(association) | 0.980 |
| CAV1 | EGFR | psi-mi:“MI:0915”(physical association) | 0.810 |
| EGFR | CAV1 | psi-mi:“MI:0915”(physical association) | 0.810 |
| EGFR | GAPDH | psi-mi:“MI:0914”(association) | 0.790 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CAV1 | rep | psi-mi:“MI:0915”(physical association) | 0.660 |
| CAVIN3 | CAV1 | psi-mi:“MI:0914”(association) | 0.650 |
| CAV1 | CAVIN3 | psi-mi:“MI:0915”(physical association) | 0.650 |
| CAV1 | RAC1 | psi-mi:“MI:0915”(physical association) | 0.640 |
| STIM1 | TRPC1 | psi-mi:“MI:0914”(association) | 0.640 |
| CAV1 | CAVIN1 | psi-mi:“MI:0915”(physical association) | 0.640 |
| CAV1 | CAVIN1 | psi-mi:“MI:0914”(association) | 0.640 |
| CAVIN1 | CAV1 | psi-mi:“MI:0914”(association) | 0.640 |
| FAF2 | UBB | psi-mi:“MI:0914”(association) | 0.640 |
| CAVIN1 | CAV1 | psi-mi:“MI:0915”(physical association) | 0.640 |
| PROCR | F2R | psi-mi:“MI:0914”(association) | 0.640 |
| TRPC1 | CAV1 | psi-mi:“MI:0914”(association) | 0.630 |
| TRPC1 | CAV1 | psi-mi:“MI:0407”(direct interaction) | 0.630 |
| TRPC1 | CAV1 | psi-mi:“MI:0915”(physical association) | 0.630 |
BioGRID (1001): ABCC1 (Affinity Capture-Western), TFRC (Affinity Capture-Western), CAV1 (Affinity Capture-RNA), CAV1 (Affinity Capture-RNA), CAV1 (Affinity Capture-Western), CAV1 (Co-fractionation), CAV1 (Two-hybrid), CAV1 (Co-localization), CAV1 (Co-fractionation), CAV1 (Affinity Capture-Western), PPARG (Affinity Capture-Western), CAV1 (Protein-peptide), CAV1 (Two-hybrid), VAV2 (Affinity Capture-Western), CAV1 (Affinity Capture-Western)
ESM2 similar proteins: A0M8R5, A0M8R6, A0M8S6, A1X148, O46550, P41350, P51636, Q00PK0, Q03135, Q07DV9, Q07DW0, Q07DX2, Q07DY2, Q07DZ2, Q07DZ3, Q07E26, Q07E39, Q07E50, Q09YH8, Q09YH9, Q09YJ1, Q09YK2, Q09YL4, Q09YN7, Q108U8, Q2IBA4, Q2IBA5, Q2IBC1, Q2IBC2, Q2IBC5, Q2IBD6, Q2IBD7, Q2IBF0, Q2IBF3, Q2IBG9, Q2QL80, Q2QL91, Q2QLB1, Q2QLC1, Q2QLC2
Diamond homologs: A0M8R5, A0M8R6, A0M8S6, A0M8S7, A1X148, A1X149, O46550, P33724, P35431, P41350, P49817, P51636, P51637, P51638, P56539, P79132, Q00PJ9, Q00PK0, Q03135, Q07DV9, Q07DW0, Q07DX1, Q07DX2, Q07DY2, Q07DZ2, Q07DZ3, Q07E02, Q07E25, Q07E26, Q07E38, Q07E39, Q07E49, Q07E50, Q09YH8, Q09YH9, Q09YJ1, Q09YK1, Q09YK2, Q09YL4, Q09YN6
SIGNOR signaling
19 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FYN | “down-regulates activity” | CAV1 | phosphorylation |
| SRC | “down-regulates activity” | CAV1 | phosphorylation |
| CAV1 | up-regulates | LRP6 | binding |
| NR3C1 | up-regulates | CAV1 | binding |
| CAV1 | “up-regulates activity” | HMGA1 | relocalization |
| CAV1 | “up-regulates quantity” | ANXA3 | relocalization |
| CAV1 | “up-regulates quantity” | “Fatty acid” | relocalization |
| CAV1 | “down-regulates activity” | SLC1A1 | binding |
| CAV1 | “down-regulates activity” | SLC1A3 | binding |
| CAV1 | “down-regulates activity” | SLC1A2 | binding |
| CAV1 | “down-regulates activity” | SLC1A6 | binding |
| ZNRF1 | “down-regulates quantity by destabilization” | CAV1 | polyubiquitination |
| PTPN14 | “down-regulates activity” | CAV1 | dephosphorylation |
| PRKN | “down-regulates quantity” | CAV1 | ubiquitination |
| MET | “up-regulates activity” | CAV1 | phosphorylation |
| EPHB1 | “down-regulates quantity by destabilization” | CAV1 | phosphorylation |
| PTPN1 | unknown | CAV1 | dephosphorylation |
| CSNK2A1 | unknown | CAV1 | phosphorylation |
| CSNK2A2 | unknown | CAV1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 159 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| VEGFR2 mediated vascular permeability | 5 | 20.0× | 9e-04 |
| EPHB-mediated forward signaling | 5 | 13.0× | 3e-03 |
| EPH-ephrin mediated repulsion of cells | 6 | 12.9× | 1e-03 |
| RHOQ GTPase cycle | 7 | 12.4× | 5e-04 |
| Regulation of actin dynamics for phagocytic cup formation | 6 | 10.8× | 2e-03 |
| RHOJ GTPase cycle | 5 | 9.8× | 6e-03 |
| FCGR3A-mediated phagocytosis | 5 | 9.2× | 8e-03 |
| RHOB GTPase cycle | 6 | 9.1× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of release of sequestered calcium ion into cytosol | 5 | 20.0× | 5e-03 |
| epidermal growth factor receptor signaling pathway | 6 | 12.0× | 5e-03 |
| protein modification process | 6 | 11.8× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
199 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 3 |
| Uncertain significance | 77 |
| Likely benign | 80 |
| Benign | 14 |
Top pathogenic / likely-pathogenic (13)
| Variant ID | HGVS | Classification |
|---|---|---|
| 128609 | NM_001753.5(CAV1):c.401_402delinsA (p.Ile134fs) | Pathogenic |
| 1685602 | NM_001753.5(CAV1):c.368_369del (p.Ser123fs) | Pathogenic |
| 204324 | NM_001753.5(CAV1):c.400del (p.Ile134fs) | Pathogenic |
| 208669 | NM_001753.5(CAV1):c.479_480del (p.Leu159_Phe160insTer) | Pathogenic |
| 209106 | NM_001753.5(CAV1):c.424C>T (p.Gln142Ter) | Pathogenic |
| 2443747 | NM_001753.5(CAV1):c.237_238del (p.His79fs) | Pathogenic |
| 56967 | NM_001753.5(CAV1):c.474del (p.Leu159fs) | Pathogenic |
| 56968 | NM_001753.5(CAV1):c.473del (p.Pro158fs) | Pathogenic |
| 59715 | GRCh38/hg38 7q31.2(chr7:115042242-116687714)x3 | Pathogenic |
| 8467 | NM_001753.5(CAV1):c.112G>T (p.Glu38Ter) | Pathogenic |
| 1493101 | NM_001753.5(CAV1):c.446_447insT (p.Ile150fs) | Likely pathogenic |
| 2631155 | NM_001753.5(CAV1):c.396dup (p.Cys133fs) | Likely pathogenic |
| 3065015 | NM_001753.5(CAV1):c.436del (p.Arg146fs) | Likely pathogenic |
SpliceAI
690 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:116526461:A:AG | acceptor_gain | 1.0000 |
| 7:116526462:T:G | acceptor_gain | 1.0000 |
| 7:116526475:C:A | acceptor_gain | 1.0000 |
| 7:116526478:C:A | acceptor_gain | 1.0000 |
| 7:116526686:CAAGG:C | donor_loss | 1.0000 |
| 7:116526687:AAGG:A | donor_loss | 1.0000 |
| 7:116526688:AG:A | donor_gain | 1.0000 |
| 7:116526688:AGG:A | donor_loss | 1.0000 |
| 7:116526689:GG:G | donor_gain | 1.0000 |
| 7:116526689:GGT:G | donor_loss | 1.0000 |
| 7:116526690:G:GA | donor_loss | 1.0000 |
| 7:116526690:G:GG | donor_gain | 1.0000 |
| 7:116526691:T:A | donor_loss | 1.0000 |
| 7:116558942:TTAG:T | acceptor_loss | 1.0000 |
| 7:116558943:TA:T | acceptor_loss | 1.0000 |
| 7:116558944:AGAT:A | acceptor_loss | 1.0000 |
| 7:116558945:GATT:G | acceptor_gain | 1.0000 |
| 7:116526458:T:TA | acceptor_gain | 0.9900 |
| 7:116526473:A:AG | acceptor_gain | 0.9900 |
| 7:116526473:ACC:A | acceptor_gain | 0.9900 |
| 7:116526474:C:G | acceptor_gain | 0.9900 |
| 7:116526484:C:A | acceptor_gain | 0.9900 |
| 7:116526520:T:TA | acceptor_gain | 0.9900 |
| 7:116526521:GCAGG:G | acceptor_loss | 0.9900 |
| 7:116526523:A:AG | acceptor_gain | 0.9900 |
| 7:116526523:AG:A | acceptor_gain | 0.9900 |
| 7:116526523:AGGGA:A | acceptor_loss | 0.9900 |
| 7:116526524:G:C | acceptor_loss | 0.9900 |
| 7:116526524:G:GG | acceptor_gain | 0.9900 |
| 7:116526524:GG:G | acceptor_gain | 0.9900 |
AlphaMissense
1195 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:116526654:C:A | R54S | 1.000 |
| 7:116559012:A:C | S88R | 1.000 |
| 7:116559014:C:A | S88R | 1.000 |
| 7:116559014:C:G | S88R | 1.000 |
| 7:116558952:T:C | F68L | 0.999 |
| 7:116558953:T:G | F68C | 0.999 |
| 7:116558954:T:A | F68L | 0.999 |
| 7:116558954:T:G | F68L | 0.999 |
| 7:116558988:A:C | S80R | 0.999 |
| 7:116558990:T:A | S80R | 0.999 |
| 7:116558990:T:G | S80R | 0.999 |
| 7:116559003:T:A | W85R | 0.999 |
| 7:116559003:T:C | W85R | 0.999 |
| 7:116559005:G:C | W85C | 0.999 |
| 7:116559005:G:T | W85C | 0.999 |
| 7:116559024:T:C | F92L | 0.999 |
| 7:116559026:C:A | F92L | 0.999 |
| 7:116559026:C:G | F92L | 0.999 |
| 7:116559073:G:A | G108D | 0.999 |
| 7:116559096:G:C | G116R | 0.999 |
| 7:116559097:G:A | G116D | 0.999 |
| 7:116559132:T:A | W128R | 0.999 |
| 7:116559132:T:C | W128R | 0.999 |
| 7:116559145:C:A | P132Q | 0.999 |
| 7:116526654:C:G | R54G | 0.998 |
| 7:116526654:C:T | R54C | 0.998 |
| 7:116526655:G:C | R54P | 0.998 |
| 7:116526657:G:C | D55H | 0.998 |
| 7:116526658:A:G | D55G | 0.998 |
| 7:116558953:T:C | F68S | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000073713 (7:116523332 T>G), RS1000121999 (7:116531530 A>C), RS1000155120 (7:116546652 G>A), RS1000173872 (7:116549364 A>T), RS1000280802 (7:116556183 G>A), RS1000314644 (7:116540716 G>A), RS1000328738 (7:116543563 G>A), RS1000377249 (7:116543231 A>G), RS1000392718 (7:116549688 A>T), RS1000430117 (7:116531802 C>T), RS1000587005 (7:116534418 G>A,T), RS1000650014 (7:116542472 T>A), RS1000673336 (7:116556219 T>G), RS1000726848 (7:116548061 T>C), RS1000760560 (7:116549428 G>A)
Disease associations
OMIM: gene MIM:601047 | disease phenotypes: MIM:615343, MIM:606721, MIM:612526, MIM:616738
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| pulmonary hypertension, primary, 3 | Strong | Autosomal dominant |
| partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome | Strong | Autosomal dominant |
| congenital generalized lipodystrophy type 3 | Moderate | Autosomal dominant |
| heritable pulmonary arterial hypertension | Supportive | Autosomal dominant |
| Berardinelli-Seip congenital lipodystrophy | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (4)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| pulmonary arterial hypertension | Definitive | AD |
| lipodystrophy | Limited | AD |
| congenital generalized lipodystrophy type 3 | Definitive | AR |
| amyotrophic lateral sclerosis | Limited | AD |
Mondo (9): renal cell carcinoma (MONDO:0005086), pulmonary hypertension, primary, 3 (MONDO:0014135), partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome (MONDO:0011714), congenital generalized lipodystrophy type 3 (MONDO:0012923), radioulnar synostosis with amegakaryocytic thrombocytopenia 2 (MONDO:0014758), monogenic diabetes (MONDO:0015967), amyotrophic lateral sclerosis (MONDO:0004976), heritable pulmonary arterial hypertension (MONDO:0017148), Berardinelli-Seip congenital lipodystrophy (MONDO:0018883)
Orphanet (8): Renal cell carcinoma (Orphanet:217071), Idiopathic/heritable pulmonary arterial hypertension (Orphanet:422), Congenital generalized lipodystrophy (Orphanet:528), Congenital generalized lipodystrophy type 3 (Orphanet:696206), Radio-ulnar synostosis-amegakaryocytic thrombocytopenia syndrome (Orphanet:71289), Rare genetic diabetes mellitus (Orphanet:183625), Pulmonary arterial hypertension associated with congenital heart disease (Orphanet:275803), Amyotrophic lateral sclerosis (Orphanet:803)
HPO phenotypes
106 total (30 of 106 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000103 | Polyuria |
| HP:0000160 | Narrow mouth |
| HP:0000217 | Xerostomia |
| HP:0000239 | Large fontanelles |
| HP:0000325 | Triangular face |
| HP:0000360 | Tinnitus |
| HP:0000369 | Low-set ears |
| HP:0000418 | Narrow nasal ridge |
| HP:0000518 | Cataract |
| HP:0000519 | Developmental cataract |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000639 | Nystagmus |
| HP:0000670 | Carious teeth |
| HP:0000786 | Primary amenorrhea |
| HP:0000819 | Diabetes mellitus |
| HP:0000822 | Hypertension |
| HP:0000855 | Insulin resistance |
| HP:0000951 | Abnormality of the skin |
| HP:0000956 | Acanthosis nigricans |
| HP:0000958 | Dry skin |
| HP:0000963 | Thin skin |
| HP:0000965 | Cutis marmorata |
| HP:0001000 | Abnormality of skin pigmentation |
| HP:0001007 | Hirsutism |
| HP:0001053 | Hypopigmented skin patches |
| HP:0001278 | Orthostatic hypotension |
| HP:0001310 | Dysmetria |
GWAS associations
71 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000561_3 | Electrocardiographic traits | 7.000000e-13 |
| GCST000562_1 | PR interval | 4.000000e-28 |
| GCST000793_1 | Glaucoma (primary open-angle) | 2.000000e-11 |
| GCST001499_6 | Atrial fibrillation | 4.000000e-12 |
| GCST001735_7 | PR interval | 4.000000e-12 |
| GCST002456_5 | PR segment duration | 5.000000e-12 |
| GCST002500_60 | QT interval | 3.000000e-08 |
| GCST002535_4 | PR interval | 3.000000e-14 |
| GCST002542_8 | Electrocardiographic traits | 2.000000e-06 |
| GCST002580_4 | Intraocular pressure | 2.000000e-11 |
| GCST002582_6 | Glaucoma (primary open-angle) | 5.000000e-07 |
| GCST004074_7 | Intraocular pressure | 1.000000e-11 |
| GCST004074_8 | Intraocular pressure | 4.000000e-13 |
| GCST004373_13 | Atrial fibrillation | 2.000000e-14 |
| GCST004611_27 | High light scatter reticulocyte count | 1.000000e-19 |
| GCST004612_37 | High light scatter reticulocyte percentage of red cells | 6.000000e-22 |
| GCST004619_8 | Reticulocyte fraction of red cells | 1.000000e-24 |
| GCST004622_6 | Reticulocyte count | 1.000000e-20 |
| GCST004628_94 | Immature fraction of reticulocytes | 7.000000e-09 |
| GCST004826_17 | P wave duration | 1.000000e-10 |
| GCST004826_8 | P wave duration | 8.000000e-11 |
| GCST005080_8 | PR interval | 2.000000e-18 |
| GCST005170_44 | Intraocular pressure | 2.000000e-14 |
| GCST005170_45 | Intraocular pressure | 2.000000e-14 |
| GCST005580_109 | Intraocular pressure | 1.000000e-42 |
| GCST005845_5 | Heart rate increase in response to exercise | 2.000000e-09 |
| GCST005846_8 | Heart rate response to recovery post exercise (10 sec) | 2.000000e-12 |
| GCST005847_10 | Heart rate response to recovery post exercise (20 sec) | 2.000000e-12 |
| GCST005848_16 | Heart rate response to recovery post exercise (50 sec) | 3.000000e-10 |
| GCST005849_1 | Heart rate response to recovery post exercise (40 sec) | 8.000000e-11 |
EFO canonical traits (13, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004462 | PR interval |
| EFO:0005095 | PR segment |
| EFO:0004682 | QT interval |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0007986 | reticulocyte count |
| EFO:0005094 | P wave duration |
| EFO:0009184 | heart rate response to exercise |
| EFO:0009185 | heart rate response to recovery post exercise |
| EFO:0004327 | electrocardiography |
| EFO:0004587 | lymphocyte count |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000690 | Amyotrophic Lateral Sclerosis | C10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050 |
| D002292 | Carcinoma, Renal Cell | C04.557.470.200.025.390; C04.588.945.947.535.160; C12.050.351.937.820.535.160; C12.050.351.968.419.473.160; C12.200.758.820.750.160; C12.200.777.419.473.160; C12.900.820.535.160; C12.950.419.473.160; C12.950.983.535.160 |
| C567282 | Lipodystrophy, Congenital Generalized, Type 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3808270 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
190 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases methylation, increases methylation, affects cotreatment, increases expression, affects expression (+1 more) | 10 |
| Hydrogen Peroxide | increases response to substance, increases degradation, affects binding, decreases reaction, increases ubiquitination (+3 more) | 7 |
| sodium arsenite | increases abundance, increases expression, decreases reaction, increases response to substance, affects expression (+1 more) | 6 |
| Particulate Matter | increases expression, increases localization, decreases expression, increases abundance, affects cotreatment | 6 |
| Arsenic Trioxide | decreases expression, increases expression | 5 |
| Air Pollutants | increases expression, affects cotreatment, decreases expression, increases abundance | 5 |
| trichostatin A | increases expression, affects cotreatment | 4 |
| Rosiglitazone | decreases reaction, increases expression | 4 |
| Resveratrol | affects binding, increases reaction, increases abundance, increases phosphorylation, affects transport (+3 more) | 4 |
| Cisplatin | increases cleavage, increases expression, increases reaction, increases response to substance, affects response to substance (+3 more) | 4 |
| Lipopolysaccharides | increases reaction, affects localization, increases phosphorylation, affects expression, affects response to substance (+3 more) | 4 |
| Tetrachlorodibenzodioxin | affects expression, affects cotreatment, decreases expression | 4 |
| bisphenol A | affects methylation, affects cotreatment, increases expression | 3 |
| arsenite | decreases expression, decreases reaction, affects binding, increases reaction, increases phosphorylation | 3 |
| (+)-JQ1 compound | decreases expression | 3 |
| Acetylcysteine | decreases reaction, increases phosphorylation, increases expression, decreases expression, increases degradation (+1 more) | 3 |
| Benzo(a)pyrene | decreases expression, increases expression, increases methylation | 3 |
| Estradiol | increases phosphorylation, affects cotreatment, decreases expression, decreases reaction, increases expression | 3 |
| Methotrexate | affects response to substance, decreases response to substance, increases expression | 3 |
| Quercetin | affects localization, decreases reaction, increases expression | 3 |
| Cadmium Chloride | decreases expression, increases expression | 3 |
| triadimefon | decreases expression | 2 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| SB 203580 | increases phosphorylation, decreases reaction, increases expression, increases reaction | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| bisphenol S | decreases methylation, increases expression | 2 |
| Decitabine | affects cotreatment, decreases expression, increases expression | 2 |
| Fulvestrant | affects methylation, decreases expression, decreases reaction, affects cotreatment | 2 |
| Acetaminophen | decreases expression | 2 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3813174 | Binding | Inhibition of oligomerization of human soluble full length variant CAV at 10 uM by dynamic light scattering analysis | Affinity-Guided Design of Caveolin-1 Ligands for Deoligomerization. — J Med Chem |
Cellosaurus cell lines
6 cell lines: 5 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1BU | Abcam A-431 CAV1 KO | Cancer cell line | Female |
| CVCL_B1M9 | Abcam HeLa CAV1 KO | Cancer cell line | Female |
| CVCL_D1RU | Abcam U-87MG CAV1 KO | Cancer cell line | Male |
| CVCL_D9B4 | Ubigene HEK293 CAV1 KO | Transformed cell line | Female |
| CVCL_E0YE | Ubigene MCF-7 CAV1 KO | Cancer cell line | Female |
| CVCL_E1IT | HyCyte A-549 KO-hCAV1 | Cancer cell line | Male |
Clinical trials (associated diseases)
307 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03344159 | PHASE4 | COMPLETED | Spironolactone Therapy in Chronic Stable Right HF Trial |
| NCT00414765 | PHASE4 | COMPLETED | Aldesleukin in Participants With Metastatic Renal Cell Carcinoma or Metastatic Melanoma |
| NCT00777504 | PHASE4 | UNKNOWN | Study to the Optimal Duration of Therapy With Oral Angiogenesis Inhibitors |
| NCT00930345 | PHASE4 | TERMINATED | Biological, Pathological and Imagery Markers in the First-line Treatment of Metastatic Clear-cell Renal Cell Carcinoma |
| NCT01206764 | PHASE4 | COMPLETED | A Trial of Everolimis in Patients With Advanced Renal Cell Carcinoma. |
| NCT01266837 | PHASE4 | COMPLETED | Open Label, Single Arm Trial to Characterize Patients With Metastatic RCC Treated With Everolimus After Failure of the First VEGF-targeted Therapy (MARC-2) |
| NCT02056587 | PHASE4 | COMPLETED | Everolimus in Patients With Metastatic Renal Cell Carcinoma Following Progression on Prior Bevacizumab Treatment |
| NCT02338570 | PHASE4 | TERMINATED | Outcome-related Factors in Patients With Metastatic Renal Cell Carcinoma Treated With Everolimus (ORCHIDEE) |
| NCT02596035 | PHASE4 | COMPLETED | An Investigational Immuno-therapy Safety Trial of Nivolumab in Patients With Advanced or Metastatic Renal Cell Carcinoma |
| NCT02982954 | PHASE4 | COMPLETED | A Study to Evaluate the Safety of Nivolumab and Ipilimumab in Subjects With Previously Untreated Advanced or Metastatic Renal Cell Cancer |
| NCT05949424 | PHASE4 | UNKNOWN | OPTI - DOSE: Optimal Dosing of Oral Anticancer Drugs in Older Adults |
| NCT07028125 | PHASE4 | RECRUITING | Digital Monitoring of Self-reported Symptoms by Patients Treated With Cabozantinib Plus Nivolumab for Advanced Clear-cell Renal Carcinoma |
| NCT07405086 | PHASE4 | RECRUITING | Morning Versus Afternoon Administration of Immunotherapy for the Treatment of Advanced or Metastatic Solid Tumors, The Knight SHIFT Study |
| NCT00033904 | PHASE3 | COMPLETED | Survival Study Of Oncophage® vs. Observation In Patients With Kidney Cancer |
| NCT00126178 | PHASE3 | TERMINATED | Clinical Trial Studying a Personalized Cancer Vaccine in Patients With Non-metastatic Kidney Cancer |
| NCT00291369 | PHASE3 | COMPLETED | Cytokines in Patients With Metastatic Renal Cell Carcinoma of Intermediate Prognosis |
| NCT00410124 | PHASE3 | COMPLETED | RAD001 Plus Best Supportive Care (BSC) Versus BSC Plus Placebo in Patients With Metastatic Carcinoma of the Kidney Which Has Progressed After Treatment With Sorafenib and/or Sunitinib |
| NCT00474786 | PHASE3 | COMPLETED | Temsirolimus Versus Sorafenib As Second-Line Therapy In Patients With Advanced RCC Who Have Failed First-Line Sunitinib |
| NCT00478114 | PHASE3 | COMPLETED | Efficacy and Safety of Sorafenib in Advanced Renal Cell Carcinoma (RCC) |
| NCT00606632 | PHASE3 | COMPLETED | Pre-surgical Detection of Clear Cell Renal Cell Carcinoma (ccRCC) Using Radiolabeled G250-Antibody |
| NCT00606866 | PHASE3 | COMPLETED | MRI Study of BAY 43-9006 in Metastatic Renal Cell Carcinoma |
| NCT00631371 | PHASE3 | COMPLETED | Study Comparing Bevacizumab + Temsirolimus vs. Bevacizumab + Interferon-Alfa In Advanced Renal Cell Carcinoma Subjects |
| NCT00732914 | PHASE3 | COMPLETED | Sequential Study to Treat Renal Cell Carcinoma |
| NCT00869011 | PHASE3 | UNKNOWN | Exercise for Patients With Renal Cell Cancer Receiving Sunitinib |
| NCT00930033 | PHASE3 | COMPLETED | Clinical Trial to Assess the Importance of Nephrectomy |
| NCT01030783 | PHASE3 | COMPLETED | A Study to Compare Tivozanib (AV-951) to Sorafenib in Subjects With Advanced Renal Cell Carcinoma |
| NCT01076010 | PHASE3 | COMPLETED | An Extension Treatment Protocol for Subjects Who Have Participated in a Study of Tivozanib Versus Sorafenib in Kidney Carcinoma (Protocol AV-951-09-301). |
| NCT01198158 | PHASE3 | TERMINATED | Everolimus With or Without Bevacizumab in Treating Patients With Advanced Kidney Cancer That Progressed After First-Line Therapy |
| NCT01223027 | PHASE3 | COMPLETED | Study of Dovitinib Versus Sorafenib in Patients With Metastatic Renal Cell Carcinoma |
| NCT01224288 | PHASE3 | ACTIVE_NOT_RECRUITING | Dynamic Contrast Enhancement Computed Tomography for Evaluating Tumor Perfusion in Patients With Metastatic Renal Cell Carcinoma Receiving Targeted Therapies: Renal Cell Carcinoma (RCC) Scramble |
| NCT01235962 | PHASE3 | COMPLETED | A Study to Evaluate Pazopanib as an Adjuvant Treatment for Localized Renal Cell Carcinoma (RCC) |
| NCT01265810 | PHASE3 | COMPLETED | Caphosol in Oral Mucositis Due to Targeted Therapy |
| NCT01265901 | PHASE3 | COMPLETED | IMA901 in Patients Receiving Sunitinib for Advanced/Metastatic Renal Cell Carcinoma |
| NCT01481870 | PHASE3 | UNKNOWN | Comparison of Sequential Therapies With Sunitinib and Sorafenib in Advanced Renal Cell Carcinoma |
| NCT01582672 | PHASE3 | TERMINATED | Phase 3 Trial of Autologous Dendritic Cell Immunotherapy Plus Standard Treatment of Advanced Renal Cell Carcinoma |
| NCT01613846 | PHASE3 | COMPLETED | Phase III Sequential Open-label Study to Evaluate the Efficacy and Safety of Sorafenib Followed by Pazopanib Versus Pazopanib Followed by Sorafenib in the Treatment of Advanced / Metastatic Renal Cell Carcinoma (SWITCH-II) |
| NCT01762592 | PHASE3 | WITHDRAWN | REDECT 2: REnal Masses: Pivotal Trial to DEteCT Clear Cell Renal Cell Carcinoma With PET/CT |
| NCT01865747 | PHASE3 | COMPLETED | A Study of Cabozantinib (XL184) vs Everolimus in Subjects With Metastatic Renal Cell Carcinoma |
| NCT02231749 | PHASE3 | COMPLETED | Nivolumab Combined With Ipilimumab Versus Sunitinib in Previously Untreated Advanced or Metastatic Renal Cell Carcinoma (CheckMate 214) |
| NCT02420821 | PHASE3 | COMPLETED | A Study of Atezolizumab in Combination With Bevacizumab Versus Sunitinib in Participants With Untreated Advanced Renal Cell Carcinoma (RCC) |
Related Atlas pages
- Associated diseases: congenital generalized lipodystrophy type 3, pulmonary hypertension, primary, 3, partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome, heritable pulmonary arterial hypertension, Berardinelli-Seip congenital lipodystrophy, pulmonary arterial hypertension, lipodystrophy, amyotrophic lateral sclerosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyotrophic lateral sclerosis, atrial fibrillation, Berardinelli-Seip congenital lipodystrophy, congenital generalized lipodystrophy type 3, glaucoma, heritable pulmonary arterial hypertension, monogenic diabetes, open-angle glaucoma, partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome, pulmonary hypertension, primary, 3, radioulnar synostosis with amegakaryocytic thrombocytopenia 2, renal cell carcinoma