CBL
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Also known as RNF55c-Cbl
Summary
CBL (Cbl proto-oncogene, HGNC:1541) is a protein-coding gene on chromosome 11q23.3, encoding E3 ubiquitin-protein ligase CBL (P22681). E3 ubiquitin-protein ligase that acts as a negative regulator of many signaling pathways by mediating ubiquitination of cell surface receptors.
This gene is a proto-oncogene that encodes a RING finger E3 ubiquitin ligase. The encoded protein is one of the enzymes required for targeting substrates for degradation by the proteasome. This protein mediates the transfer of ubiquitin from ubiquitin conjugating enzymes (E2) to specific substrates. This protein also contains an N-terminal phosphotyrosine binding domain that allows it to interact with numerous tyrosine-phosphorylated substrates and target them for proteasome degradation. As such it functions as a negative regulator of many signal transduction pathways. This gene has been found to be mutated or translocated in many cancers including acute myeloid leukaemia, and expansion of CGG repeats in the 5’ UTR has been associated with Jacobsen syndrome. Mutations in this gene are also the cause of Noonan syndrome-like disorder.
Source: NCBI Gene 867 — RefSeq curated summary.
At a glance
- Gene–disease (curated): CBL-related disorder (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 22
- Clinical variants (ClinVar): 2,431 total — 12 pathogenic, 14 likely-pathogenic
- Phenotypes (HPO): 143
- Druggable target: yes
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 3 cancer types
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_005188
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1541 |
| Approved symbol | CBL |
| Name | Cbl proto-oncogene |
| Location | 11q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RNF55, c-Cbl |
| Ensembl gene | ENSG00000110395 |
| Ensembl biotype | protein_coding |
| OMIM | 165360 |
| Entrez | 867 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 5 protein_coding, 1 nonsense_mediated_decay
ENST00000264033, ENST00000634301, ENST00000634586, ENST00000634840, ENST00000637974, ENST00000700472
RefSeq mRNA: 1 — MANE Select: NM_005188
NM_005188
CCDS: CCDS8418
Canonical transcript exons
ENST00000264033 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000796209 | 119284969 | 119285100 |
| ENSE00000796211 | 119287852 | 119287946 |
| ENSE00000796212 | 119296918 | 119297034 |
| ENSE00000796213 | 119297384 | 119297481 |
| ENSE00000796214 | 119298358 | 119298540 |
| ENSE00001128273 | 119278510 | 119278713 |
| ENSE00001128289 | 119277757 | 119277844 |
| ENSE00001206751 | 119285189 | 119285566 |
| ENSE00001238481 | 119299495 | 119308149 |
| ENSE00001240776 | 119275997 | 119276134 |
| ENSE00001240782 | 119274832 | 119274953 |
| ENSE00001240790 | 119273868 | 119274024 |
| ENSE00001240795 | 119271735 | 119271881 |
| ENSE00001240799 | 119232448 | 119232695 |
| ENSE00001240819 | 119206339 | 119206612 |
| ENSE00001795866 | 119278166 | 119278297 |
Expression profiles
Bgee: expression breadth ubiquitous, 271 present calls, max score 93.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.1189 / max 461.1191, expressed in 1794 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 117108 | 9.2272 | 1757 |
| 117105 | 4.5980 | 1473 |
| 117107 | 2.0791 | 1203 |
| 117106 | 0.2146 | 56 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 93.28 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 91.77 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 91.74 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 91.00 | gold quality |
| saphenous vein | UBERON:0007318 | 89.97 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 89.80 | gold quality |
| superficial temporal artery | UBERON:0001614 | 89.66 | gold quality |
| nipple | UBERON:0002030 | 89.52 | gold quality |
| blood | UBERON:0000178 | 89.41 | gold quality |
| visceral pleura | UBERON:0002401 | 89.14 | gold quality |
| gingival epithelium | UBERON:0001949 | 88.95 | gold quality |
| ventricular zone | UBERON:0003053 | 88.70 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 88.70 | gold quality |
| medial globus pallidus | UBERON:0002477 | 88.68 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 88.63 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 88.48 | gold quality |
| lower lobe of lung | UBERON:0008949 | 88.37 | gold quality |
| adult organism | UBERON:0007023 | 88.08 | gold quality |
| globus pallidus | UBERON:0001875 | 87.93 | gold quality |
| pylorus | UBERON:0001166 | 87.77 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 87.74 | gold quality |
| monocyte | CL:0000576 | 87.68 | gold quality |
| cardia of stomach | UBERON:0001162 | 87.53 | gold quality |
| ventral tegmental area | UBERON:0002691 | 87.52 | gold quality |
| leukocyte | CL:0000738 | 87.37 | gold quality |
| mononuclear cell | CL:0000842 | 87.33 | gold quality |
| parietal pleura | UBERON:0002400 | 87.04 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 86.95 | gold quality |
| gingiva | UBERON:0001828 | 86.92 | gold quality |
| synovial joint | UBERON:0002217 | 86.88 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.29 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): EGR2, STAT2
miRNA regulators (miRDB)
413 targeting CBL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- novel E3 ubiquitin-protein ligase; role in regulation of immune response - review (PMID:11826757)
- Cbl-CIN85-endophilin complex mediates ligand-induced downregulation of EGF receptors (PMID:11894095)
- The endophilin-CIN85-Cbl complex mediates ligand-dependent downregulation of c-Met (PMID:11894096)
- Negative regulation of Lck by Cbl ubiquitin ligase (PMID:11904433)
- Cbl-b protein and CIN85 downregulate receptor tyrosine kinases (PMID:12177062)
- Cbl-directed monoubiquitination of CIN85 is involved in regulation of ligand-induced degradation of EGF receptors. (PMID:12218189)
- complexation with ArgBP2 mediates ubiquitination and degradation of c-Abl (PMID:12475393)
- c-Cbl-dependent EphA2 protein degradation is induced by ligand binding. (PMID:12496371)
- MLL-CBL fusion was the result of an interstitial deletion in patients with de novo acute myeloid leukemia (FAB-M1). (PMID:12696071)
- Ron tyrosine kinase receptor desensitization mediated by c-Cbl and its binding partner Grb2. (PMID:12802274)
- c-cbl binds to hSpry2, and this interaction is critical for its physiological function in a signal-specific context (PMID:12815057)
- Cbl has a role, via its ubiquitin ligase activity, as a negative regulator of activated Vav (PMID:12881521)
- Lower expression of cbl is associated with acute myeloid leukemia-M2 and higher expression of cbl is associated with acute myeloid leukemia-M5 (PMID:14738146)
- the c-Cbl/CD2AP complex binds to activated Flt-1 and plays a crucial role in its endocytosis and subsequent degradation. (PMID:15001553)
- Recruitment of CBL to lipid rafts mediates signals important for actin reorganization in growing neurites. (PMID:15128873)
- Sts-1 and Sts-2 bind to Cbl and inhibit endocytosis of receptor tyrosine kinases (PMID:15159412)
- CBL has a role in down-regulation of Lyn and Fyn in osteoblast differentiation induced by constitutive FGFR2 activation (PMID:15190072)
- c-Cbl has a role in EGFR trafficking (PMID:15210722)
- Differences in ubiquitin-binding may reflect distinct regulatory functions of c-Cbl and Cbl-b. (PMID:15273720)
- c-Cbl-dependent ubiquitination of p75NTR involved in the regulation of p75NTR signalling. (PMID:15337528)
- c-Cbl guides the epidermal growth factor receptor into clathrin-coated pits by two distinct modes of Eps15 recruitment (PMID:15465819)
- Grb2-mediated recruitment of the functional RING domain of Cbl to the EGFR is essential and sufficient to support receptor endocytosis (PMID:15635092)
- mediates ubiquitination and lysosomal degradation of PAR(2) to irrevocably terminate its signaling (PMID:15708858)
- the alpha5 integrin subunit has a role in the induction of apoptosis triggered by FGFR2 activation in osteoblasts, and a Cbl-dependent mechanism is involved in the coordinated regulation of cell apoptosis induced by alpha5 integrin degradation (PMID:15728256)
- Data show that infected cell protein 0 (ICP0) binds CIN85 in a reciprocal manner and that the complexes pulled down by ICP0 also contain Cbl. (PMID:15824310)
- dynamin, Cbl, and Src coordinately participate in signaling complexes that are important in the assembly and remodeling of the actin cytoskeleton, leading to changes in osteoclast adhesion, migration, and resorption (PMID:15872089)
- Results suggest a novel function for c-Cbl, microtubule binding and stabilization. (PMID:15878338)
- Cbl promotes clustering of endocytic adaptor proteins. (PMID:16228008)
- EGF-R fate is controlled by a checkpoint downstream of receptor ubiquitination whose regulation by the Cbl RF tail may require Sprouty2 degradation. (PMID:16246327)
- CD21 activation triggered Cbl tyrosine phosphorylation, which interacts with SH2 domains of p85 subunit, SH2 domains of Crk-L and with tyrosine phosphorylated Syk kinase. CD21 activation triggers dissociation of Cbl-Vav complex. (PMID:16289966)
- the SH3 domain of betaPix specifically interacts with a proline-arginine motif (PxxxPR) present within the ubiquitin ligase Cbl and Pak1 kinase. Cbl and Pak1 compete for binding to betaPix. (PMID:16407834)
- results implicate CD45, Cbl, Cbl-b, src kinases and potentially other associated proteins as mediators of SDF-1alpha/CXCL12-induced cell migration of Jurkat T cells (PMID:16503409)
- ubiquitin ligase of EGFR, namely c-Cbl, also mediates receptor modification with the ubiquitin-like molecule Nedd8 (PMID:16735510)
- By lysing primary hemopoietic cells at high pH, BCR-ABL1 protein-degradative activity was inhibited & association between BCR-ABL1 protein in complexes with adaptor proteins CBL, CRKL & GRB2 in primary chronic myeloid leukaemia material was demonstrated (PMID:16955467)
- Twist haploinsufficiency results in decreased Cbl-mediated PI3K degradation in osteoblasts. (PMID:17003487)
- Alix inhibits down-regulation of PDGFRbeta by modulating the interaction between c-Cbl and the receptor, thereby affecting the ubiquitination of the receptor (PMID:17082185)
- Depletion of Cbl and Cbl-b E3 ubiquitin ligases by RNA interference, or overexpression of a Cbl dominant inhibitory mutant (Cbl-N), inhibited Spred-2 ubiquitination. (PMID:17094949)
- The interaction between c-Cbl and SLAP in v-Abl-3T3 cells positively influenced c-Cbl-mediated spreading and adhesion of these cells (PMID:17237826)
- corecruitment of c-Cbl and PLCgamma1 to VEGFR-2 serves as a mechanism to fine-tune the angiogenic signal relay of VEGFR-2 (PMID:17372230)
- novel mutations in c-CBL and CBL-b have been identified in human acute myeloid leukemia (PMID:17475912)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cbl | ENSDARG00000009958 |
| mus_musculus | Cbl | ENSMUSG00000034342 |
| rattus_norvegicus | Cbl | ENSRNOG00000008444 |
Paralogs (2): CBLB (ENSG00000114423), CBLC (ENSG00000142273)
Protein
Protein identifiers
E3 ubiquitin-protein ligase CBL — P22681 (reviewed: P22681)
Alternative names: Casitas B-lineage lymphoma proto-oncogene, Proto-oncogene c-Cbl, RING finger protein 55, RING-type E3 ubiquitin transferase CBL, Signal transduction protein CBL
All UniProt accessions (6): P22681, A0A0U1RQX8, A0A0U1RR39, A0A0U1RRJ5, A0A1B0GW38, A0A8V8TQA9
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase that acts as a negative regulator of many signaling pathways by mediating ubiquitination of cell surface receptors. Accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by the proteasome. Recognizes activated receptor tyrosine kinases, including KIT, FLT1, FGFR1, FGFR2, PDGFRA, PDGFRB, CSF1R, EPHA8 and KDR and mediates their ubiquitination to terminate signaling. Recognizes membrane-bound HCK, SRC and other kinases of the SRC family and mediates their ubiquitination and degradation. Ubiquitinates EGFR and SPRY2. Involved in LAG3-mediated inhibition of TCR signaling: following ligand-binding to LAG3, catalyzes ‘Lys-63’-linked ubiquitination of LAG3, unleashing the LAG3 C-terminus from the membrane, and initiating a signaling that prevents TCR activation. Ubiquitinates NECTIN1 following association between NECTIN1 and herpes simplex virus 1/HHV-1 envelope glycoprotein D, leading to NECTIN1 removal from cell surface. Participates in signal transduction in hematopoietic cells. Plays an important role in the regulation of osteoblast differentiation and apoptosis. Essential for osteoclastic bone resorption. The ‘Tyr-731’ phosphorylated form induces the activation and recruitment of phosphatidylinositol 3-kinase to the cell membrane in a signaling pathway that is critical for osteoclast function. In association with CBLB, required for proper feedback inhibition of ciliary platelet-derived growth factor receptor-alpha (PDGFRA) signaling pathway via ubiquitination and internalization of PDGFRA.
Subunit / interactions. Forms homodimers; IFT20 promotes the formation of stable homodimers. Interacts (phosphorylated at Tyr-731) with PIK3R1. Associates with NCK via its SH3 domain. The phosphorylated C-terminus interacts with CD2AP via its second SH3 domain. Binds to UBE2L3. Interacts with adapters SLA, SLA2 and with the phosphorylated C-terminus of SH2B2. Interacts with EGFR, SYK and ZAP70 via the highly conserved Cbl-N region. Also interacts with SORBS1 and INPPL1/SHIP2. Interacts with phosphorylated LAT2. Interacts with CBLB. Interacts with ALK, AXL, BLK, FGR and FGFR2. Interacts with CSF1R, EPHB1, FLT1, KDR, PDGFRA and PDGFRB; regulates receptor degradation through ubiquitination. Interacts with HCK and LYN. Interacts with ATX2. Interacts with TEK/TIE2 (tyrosine phosphorylated). Interacts with SH3KBP1 and this interaction is inhibited in the presence of SHKBP1 or ARAP1. Interacts with SIGLEC10. Interacts with IFT20. Interacts with SPRY2; the interaction inhibits CBL-mediated ubiquitination of EGFR. Interacts (phosphorylated at Tyr-774) with tensin TNS4 (via SH2 domain); the interaction is enhanced in the presence of EGF and reduces interaction of CBL with EGFR. Interacts with EGFR; the interaction is reduced in the presence of TNS4. Interacts with CD5. Interacts with CD93. (Microbial infection) Interacts with M.tuberculosis LpqN, which influences the balance between intrinsic antibacterial and antiviral defense.
Subcellular location. Cytoplasm. Cell membrane. Cell projection. Cilium. Golgi apparatus.
Post-translational modifications. Phosphorylated on tyrosine residues by ALK, EGFR, SYK, FYN and ZAP70. Phosphorylated on tyrosine residues in response to FLT1 and KIT signaling. Phosphorylated on tyrosine residues by INSR and FGR. Phosphorylated on several tyrosine residues by constitutively activated FGFR3. Not phosphorylated at Tyr-731 by FGFR3. Phosphorylated on tyrosine residues by activated CSF1R, PDGFRA and PDGFRB. Phosphorylated on tyrosine residues by HCK. Ubiquitinated, leading to its degradation via the proteasome. Ubiquitination is negatively regulated by IFT20.
Disease relevance. Noonan syndrome-like disorder with or without juvenile myelomonocytic leukemia (NSLL) [MIM:613563] A syndrome characterized by a phenotype reminiscent of Noonan syndrome. Clinical features are highly variable, including facial dysmorphism, short neck, developmental delay, hyperextensible joints and thorax abnormalities with widely spaced nipples. The facial features consist of triangular face with hypertelorism, large low-set ears, ptosis, and flat nasal bridge. Some patients manifest cardiac defects. Some have an increased risk for certain malignancies, particularly juvenile myelomonocytic leukemia. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme. The N-terminus is composed of the phosphotyrosine binding (PTB) domain, a short linker region and the RING-type zinc finger. The PTB domain, which is also called TKB (tyrosine kinase binding) domain, is composed of three different subdomains: a four-helix bundle (4H), a calcium-binding EF hand and a divergent SH2 domain.
Pathway. Protein modification; protein ubiquitination.
Miscellaneous. This protein has one functional calcium-binding site.
RefSeq proteins (1): NP_005179* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001841 | Znf_RING | Domain |
| IPR003153 | Adaptor_Cbl_N_hlx | Domain |
| IPR009060 | UBA-like_sf | Homologous_superfamily |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR014741 | Adaptor_Cbl_EF_hand-like | Domain |
| IPR014742 | Adaptor_Cbl_SH2-like | Domain |
| IPR015940 | UBA | Domain |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR018957 | Znf_C3HC4_RING-type | Domain |
| IPR024159 | Cbl_PTB | Domain |
| IPR024162 | Adaptor_Cbl | Family |
| IPR036537 | Adaptor_Cbl_N_dom_sf | Homologous_superfamily |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
Pfam: PF00097, PF00627, PF02262, PF02761, PF02762
Enzyme classification (BRENDA):
- EC 2.3.2.27 — RING-type E3 ubiquitin transferase (BRENDA: 28 organisms, 138 substrates, 10 inhibitors, 1 Km, 1 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| [UBE2W]-S-UBIQUITINYL-L-CYSTEINE | 0.3014 | 1 |
UniProt features (113 total): helix 24, strand 17, region of interest 14, modified residue 13, mutagenesis site 12, sequence variant 11, turn 6, binding site 6, compositionally biased region 5, domain 2, chain 1, zinc finger region 1, sequence conflict 1
Structure
Experimental structures (PDB)
33 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3BUX | X-RAY DIFFRACTION | 1.35 |
| 3BUW | X-RAY DIFFRACTION | 1.45 |
| 7SIY | X-RAY DIFFRACTION | 1.48 |
| 5HKY | X-RAY DIFFRACTION | 1.8 |
| 5HKZ | X-RAY DIFFRACTION | 1.8 |
| 5HKX | X-RAY DIFFRACTION | 1.85 |
| 3PLF | X-RAY DIFFRACTION | 1.92 |
| 2Y1N | X-RAY DIFFRACTION | 2 |
| 3BUM | X-RAY DIFFRACTION | 2 |
| 3BUN | X-RAY DIFFRACTION | 2 |
| 9ERZ | X-RAY DIFFRACTION | 2.02 |
| 1YVH | X-RAY DIFFRACTION | 2.05 |
| 2CBL | X-RAY DIFFRACTION | 2.1 |
| 2OO9 | X-RAY DIFFRACTION | 2.1 |
| 3OB2 | X-RAY DIFFRACTION | 2.1 |
| 1B47 | X-RAY DIFFRACTION | 2.2 |
| 3OB1 | X-RAY DIFFRACTION | 2.2 |
| 5HL0 | X-RAY DIFFRACTION | 2.2 |
| 4A49 | X-RAY DIFFRACTION | 2.21 |
| 5HKW | X-RAY DIFFRACTION | 2.25 |
| 5O76 | X-RAY DIFFRACTION | 2.47 |
| 6XAR | X-RAY DIFFRACTION | 2.5 |
| 3BUO | X-RAY DIFFRACTION | 2.6 |
| 2Y1M | X-RAY DIFFRACTION | 2.67 |
| 4A4C | X-RAY DIFFRACTION | 2.7 |
| 4A4B | X-RAY DIFFRACTION | 2.79 |
| 5J3X | X-RAY DIFFRACTION | 2.82 |
| 1FBV | X-RAY DIFFRACTION | 2.9 |
| 6O02 | X-RAY DIFFRACTION | 2.95 |
| 4GPL | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P22681-F1 | 64.27 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 229; 231; 233; 235; 240; 294
Post-translational modifications (13): 371, 439, 452, 483, 619, 642, 668, 669, 674, 700, 731, 774, 900
Mutagenesis-validated functional residues (12):
| Position | Phenotype |
|---|---|
| 80 | abolishes interaction with zap70. |
| 82 | abolishes interaction with zap70. |
| 229 | abolishes interaction with zap70. |
| 240 | abolishes interaction with zap70. |
| 294 | abolishes interaction with zap70. |
| 306 | abolishes interaction with zap70 and ephb1, but does not affect interaction with sla. reduces ubiquitination and therefo |
| 371 | strongly reduces tyrosine phosphorylation by insr; when associated with f-700 and f-774. |
| 381 | loss of ubiquitin ligase activity. |
| 674 | does not affect interaction with tns4 following egf stimulation. |
| 700 | does not affect interaction with tns4 following egf stimulation. strongly reduces tyrosine phosphorylation by insr; when |
| 731 | no effect on tyrosine phosphorylation by insr. loss of phosphorylation by src. inhibition of bone resorption. abolishes |
| 774 | loss of interaction with tns4 following egf stimulation. strongly reduces tyrosine phosphorylation by insr; when associa |
Function
Pathways and Gene Ontology
Reactome pathways
51 pathways
| ID | Pathway |
|---|---|
| R-HSA-1059683 | Interleukin-6 signaling |
| R-HSA-1236382 | Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants |
| R-HSA-1295596 | Spry regulation of FGF signaling |
| R-HSA-1433559 | Regulation of KIT signaling |
| R-HSA-182971 | EGFR downregulation |
| R-HSA-2173789 | TGF-beta receptor signaling activates SMADs |
| R-HSA-5637810 | Constitutive Signaling by EGFRvIII |
| R-HSA-5654726 | Negative regulation of FGFR1 signaling |
| R-HSA-5654727 | Negative regulation of FGFR2 signaling |
| R-HSA-5654732 | Negative regulation of FGFR3 signaling |
| R-HSA-5654733 | Negative regulation of FGFR4 signaling |
| R-HSA-6807004 | Negative regulation of MET activity |
| R-HSA-8849469 | PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1 |
| R-HSA-8856825 | Cargo recognition for clathrin-mediated endocytosis |
| R-HSA-8856828 | Clathrin-mediated endocytosis |
| R-HSA-8875360 | InlB-mediated entry of Listeria monocytogenes into host cell |
| R-HSA-912631 | Regulation of signaling by CBL |
| R-HSA-9680350 | Signaling by CSF1 (M-CSF) in myeloid cells |
| R-HSA-9706369 | Negative regulation of FLT3 |
| R-HSA-9706377 | FLT3 signaling by CBL mutants |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1433557 | Signaling by SCF-KIT |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-1643713 | Signaling by EGFR in Cancer |
| R-HSA-168256 | Immune System |
| R-HSA-170834 | Signaling by TGF-beta Receptor Complex |
| R-HSA-177929 | Signaling by EGFR |
| R-HSA-190236 | Signaling by FGFR |
| R-HSA-199991 | Membrane Trafficking |
MSigDB gene sets: 763 (showing top):
GSE45365_NK_CELL_VS_BCELL_UP, GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GGGACCA_MIR133A_MIR133B, GOBP_REGULATION_OF_CELL_ACTIVATION, AGGAAGC_MIR5163P, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, REACTOME_INTERLEUKIN_6_SIGNALING, GOBP_RESPONSE_TO_ETHANOL, GOBP_RESPONSE_TO_IONIZING_RADIATION, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_REGULATION_OF_ERBB_SIGNALING_PATHWAY, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE
GO Biological Process (34): ubiquitin-dependent protein catabolic process (GO:0006511), protein monoubiquitination (GO:0006513), DNA damage response (GO:0006974), signal transduction (GO:0007165), male gonad development (GO:0008584), response to gamma radiation (GO:0010332), response to activity (GO:0014823), protein ubiquitination (GO:0016567), cytokine-mediated signaling pathway (GO:0019221), regulation of Rap protein signal transduction (GO:0032487), response to testosterone (GO:0033574), cellular response to platelet-derived growth factor stimulus (GO:0036120), negative regulation of epidermal growth factor receptor signaling pathway (GO:0042059), response to starvation (GO:0042594), negative regulation of apoptotic process (GO:0043066), mast cell degranulation (GO:0043303), response to ethanol (GO:0045471), positive regulation of epidermal growth factor receptor signaling pathway (GO:0045742), symbiont entry into host cell (GO:0046718), positive regulation of receptor-mediated endocytosis (GO:0048260), protein stabilization (GO:0050821), negative regulation of T cell receptor signaling pathway (GO:0050860), negative regulation of T cell activation (GO:0050868), protein autoubiquitination (GO:0051865), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), ubiquitin-dependent endocytosis (GO:0070086), protein K63-linked ubiquitination (GO:0070534), cellular response to hypoxia (GO:0071456), cellular response to nerve growth factor stimulus (GO:1990090), regulation of platelet-derived growth factor receptor-alpha signaling pathway (GO:2000583), protein polyubiquitination (GO:0000209), cell surface receptor signaling pathway (GO:0007166), regulation of signaling (GO:0023051), regulation of intracellular signal transduction (GO:1902531)
GO Molecular Function (15): phosphotyrosine residue binding (GO:0001784), ubiquitin-protein transferase activity (GO:0004842), calcium ion binding (GO:0005509), zinc ion binding (GO:0008270), SH3 domain binding (GO:0017124), receptor tyrosine kinase binding (GO:0030971), phosphatidylinositol 3-kinase regulatory subunit binding (GO:0036312), cadherin binding (GO:0045296), ephrin receptor binding (GO:0046875), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), transferase activity (GO:0016740), protein kinase binding (GO:0019901), metal ion binding (GO:0046872), protein tyrosine kinase binding (GO:1990782)
GO Cellular Component (14): Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), cilium (GO:0005929), flotillin complex (GO:0016600), growth cone (GO:0030426), membrane raft (GO:0045121), perinuclear region of cytoplasm (GO:0048471), sperm end piece (GO:0097229), cytoplasm (GO:0005737), membrane (GO:0016020), axon (GO:0030424), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-23 pathways:
| Category | Pathways |
|---|---|
| Interleukin-6 family signaling | 1 |
| Signaling by Ligand-Responsive EGFR Variants in Cancer | 1 |
| Negative regulation of FGFR1 signaling | 1 |
| Negative regulation of FGFR2 signaling | 1 |
| Negative regulation of FGFR3 signaling | 1 |
| Negative regulation of FGFR4 signaling | 1 |
| Signaling by SCF-KIT | 1 |
| Signaling by EGFR | 1 |
| Signaling by TGF-beta Receptor Complex | 1 |
| Signaling by EGFRvIII in Cancer | 1 |
| Signaling by FGFR1 | 1 |
| Signaling by FGFR2 | 1 |
| Signaling by FGFR3 | 1 |
| Signaling by FGFR4 | 1 |
| Signaling by MET | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cytoplasm | 3 |
| protein ubiquitination | 2 |
| epidermal growth factor receptor signaling pathway | 2 |
| regulation of epidermal growth factor receptor signaling pathway | 2 |
| signaling receptor binding | 2 |
| modification-dependent protein catabolic process | 1 |
| cellular response to stress | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| gonad development | 1 |
| development of primary male sexual characteristics | 1 |
| response to ionizing radiation | 1 |
| response to stimulus | 1 |
| protein modification by small protein conjugation | 1 |
| cell surface receptor signaling pathway | 1 |
| cellular response to cytokine stimulus | 1 |
| Rap protein signal transduction | 1 |
| regulation of small GTPase mediated signal transduction | 1 |
| response to lipid | 1 |
| response to ketone | 1 |
| response to platelet-derived growth factor | 1 |
| cellular response to growth factor stimulus | 1 |
| negative regulation of ERBB signaling pathway | 1 |
| response to stress | 1 |
| response to nutrient levels | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| mast cell activation involved in immune response | 1 |
| mast cell mediated immunity | 1 |
| lysosome localization | 1 |
| leukocyte degranulation | 1 |
| establishment of organelle localization | 1 |
| response to alcohol | 1 |
| positive regulation of ERBB signaling pathway | 1 |
| viral life cycle | 1 |
Protein interactions and networks
STRING
2650 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CBL | GRB2 | P29354 | 996 |
| CBL | SH3KBP1 | Q96B97 | 996 |
| CBL | EGFR | P00533 | 995 |
| CBL | SRC | P12931 | 993 |
| CBL | CRKL | P46109 | 993 |
| CBL | CRK | P46108 | 992 |
| CBL | RAPGEF1 | Q13905 | 987 |
| CBL | ZAP70 | P43403 | 975 |
| CBL | FYN | P06241 | 961 |
| CBL | SHC1 | P29353 | 940 |
| CBL | LCP2 | Q13094 | 931 |
| CBL | SORBS1 | Q9BX66 | 930 |
| CBL | SYK | P43405 | 926 |
| CBL | TCN1 | P20061 | 911 |
| CBL | CD2AP | Q9Y5K6 | 910 |
IntAct
444 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CBL | SH3KBP1 | psi-mi:“MI:0915”(physical association) | 0.980 |
| SH3KBP1 | CBL | psi-mi:“MI:0915”(physical association) | 0.980 |
| SH3KBP1 | CBL | psi-mi:“MI:0914”(association) | 0.980 |
| CBL | GRB2 | psi-mi:“MI:0915”(physical association) | 0.960 |
| GRB2 | CBL | psi-mi:“MI:0915”(physical association) | 0.960 |
| EGFR | CBL | psi-mi:“MI:0915”(physical association) | 0.960 |
| CBL | EGFR | psi-mi:“MI:0915”(physical association) | 0.960 |
| CBL | EGFR | psi-mi:“MI:0407”(direct interaction) | 0.960 |
| PIK3R1 | CBL | psi-mi:“MI:0915”(physical association) | 0.940 |
| CBL | PIK3R1 | psi-mi:“MI:0915”(physical association) | 0.940 |
| NPHP1 | NPHP4 | psi-mi:“MI:2364”(proximity) | 0.930 |
| CBL | CRK | psi-mi:“MI:0915”(physical association) | 0.920 |
| CRK | CBL | psi-mi:“MI:0915”(physical association) | 0.920 |
| CRKL | CBL | psi-mi:“MI:0915”(physical association) | 0.870 |
| CBL | MET | psi-mi:“MI:2364”(proximity) | 0.860 |
| CBL | SPRY2 | psi-mi:“MI:0914”(association) | 0.860 |
| YWHAB | PIK3C2A | psi-mi:“MI:0914”(association) | 0.800 |
| CBL | CD2AP | psi-mi:“MI:0915”(physical association) | 0.800 |
| CBL | YWHAE | psi-mi:“MI:0915”(physical association) | 0.770 |
| GRB2 | WIPF3 | psi-mi:“MI:0914”(association) | 0.730 |
BioGRID (1481): CBL (Affinity Capture-Western), CBL (Affinity Capture-Western), SIRT2 (Affinity Capture-Western), CBL (Affinity Capture-Western), ABL1 (Biochemical Activity), BCR (Biochemical Activity), CBL (Affinity Capture-Western), CBL (Reconstituted Complex), CBL (Affinity Capture-Western), CBL (Reconstituted Complex), CBL (Affinity Capture-Western), TGFBR2 (Biochemical Activity), UBE2M (Reconstituted Complex), UBC (Co-crystal Structure), EGFR (Biochemical Activity)
ESM2 similar proteins: A1YFY6, A2T6X9, A6H7I8, B2RUJ5, F1M5F3, F1N2W9, O35430, O35431, O95487, O95628, O95644, P0C6S7, P14316, P17863, P22681, P22682, P23798, P23906, P35227, P81133, P98084, Q02410, Q0IHY4, Q13469, Q14190, Q14432, Q1L994, Q3UR85, Q52L14, Q5CD77, Q5RD33, Q60591, Q61045, Q61079, Q66JB6, Q69ZT9, Q6NRE7, Q6QB00, Q8BIZ1, Q8BT14
Diamond homologs: G3V8H4, P22681, P22682, P23092, Q13191, Q3TTA7, Q6DFR2, Q6GQL0, Q6NRE7, Q80XL1, Q8K4S7, Q9ULV8, A0A1L8FG46, A0A1L8FM16, B1AUE5, C0HBT3, C0HKD7, D2H0Y8, E1B7X3, O60683, O64425, P87176, P93030, Q09463, Q1ACD5, Q28GL3, Q2PFU6, Q3T139, Q3UF64, Q587N7, Q5C8U1, Q5C8U3, Q5C8U4, Q5D7H8, Q5D7I2, Q5D7I3, Q5D7I5, Q5D7J2, Q5M7Z0, Q5REL3
SIGNOR signaling
58 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CBL | down-regulates | INSR | ubiquitination |
| SH2B2 | up-regulates | CBL | binding |
| CBL | down-regulates | PIK3R1 | ubiquitination |
| CBL | down-regulates | PIK3R2 | ubiquitination |
| EGFR | up-regulates | CBL | relocalization |
| GRB2 | up-regulates | CBL | relocalization |
| SH3GLB1 | up-regulates | CBL | binding |
| UBASH3B | down-regulates | CBL | binding |
| CBL | down-regulates | LRIG1 | ubiquitination |
| LRIG1 | up-regulates | CBL | binding |
| ERBB4 | up-regulates | CBL | binding |
| ABI1 | up-regulates | CBL | binding |
| CBL | “down-regulates quantity by destabilization” | ABL1 | ubiquitination |
| CBL | “down-regulates quantity by destabilization” | MET | ubiquitination |
| CBL | “down-regulates quantity by destabilization” | CFLAR | ubiquitination |
| SH3KBP1 | up-regulates | CBL | binding |
| PTPRJ | “down-regulates activity” | CBL | |
| PRKCA | “down-regulates quantity” | CBL | phosphorylation |
| CBL | down-regulates | PI3K | ubiquitination |
| CBL | “down-regulates activity” | KIT | ubiquitination |
| Ub:E2 | “up-regulates activity” | CBL | ubiquitination |
| CBL | “down-regulates quantity by destabilization” | PDGFRB | polyubiquitination |
| CBL | “down-regulates quantity by destabilization” | EPHA2 | binding |
| CBL | “down-regulates quantity by destabilization” | LCK | polyubiquitination |
| CBL | “down-regulates activity” | SYK | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 123 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 8 | 58.4× | 5e-11 |
| Activation of BAD and translocation to mitochondria | 7 | 57.9× | 8e-10 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 7 | 51.1× | 2e-09 |
| Signaling by phosphorylated juxtamembrane, extracellular and kinase domain KIT mutants | 9 | 50.8× | 1e-11 |
| Regulation of signaling by CBL | 9 | 48.6× | 1e-11 |
| Signaling by ERBB2 ECD mutants | 6 | 43.8× | 1e-07 |
| Activation of BH3-only proteins | 8 | 43.2× | 6e-10 |
| Downstream signal transduction | 10 | 41.4× | 7e-12 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| T cell differentiation | 6 | 21.3× | 6e-05 |
| epidermal growth factor receptor signaling pathway | 9 | 20.6× | 2e-07 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 10 | 19.5× | 5e-08 |
| peptidyl-tyrosine phosphorylation | 5 | 19.5× | 5e-04 |
| ephrin receptor signaling pathway | 6 | 19.1× | 9e-05 |
| ERK1 and ERK2 cascade | 6 | 17.7× | 1e-04 |
| protein targeting | 5 | 17.0× | 8e-04 |
| insulin receptor signaling pathway | 7 | 14.4× | 9e-05 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 3 cancer types — ALL, AML, ESCA.
Clinical variants and AI predictions
ClinVar
2431 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 12 |
| Likely pathogenic | 14 |
| Uncertain significance | 1419 |
| Likely benign | 717 |
| Benign | 96 |
Top pathogenic / likely-pathogenic (26)
| Variant ID | HGVS | Classification |
|---|---|---|
| 13809 | NM_005188.4(CBL):c.1168G>T (p.Asp390Tyr) | Pathogenic |
| 1712083 | NM_005188.4(CBL):c.1103_1108del (p.Tyr368_Glu369del) | Pathogenic |
| 180815 | NM_005188.4(CBL):c.1096-1G>T | Pathogenic |
| 180826 | NM_005188.2:c.1227+2_1227+3delTACinsAAG | Pathogenic |
| 29824 | NM_005188.4(CBL):c.1112A>G (p.Tyr371Cys) | Pathogenic |
| 3772040 | NM_005188.4(CBL):c.1221_1227+20del | Pathogenic |
| 40401 | NM_005188.4(CBL):c.306T>G (p.Tyr102Ter) | Pathogenic |
| 40404 | NM_005188.4(CBL):c.1076_1087del (p.Asp359_Lys362del) | Pathogenic |
| 40405 | NM_005188.4(CBL):c.1199T>G (p.Met400Arg) | Pathogenic |
| 40407 | NM_005188.4(CBL):c.1227+2_1227+4delinsAAG | Pathogenic |
| 652390 | NC_000011.9:g.(?118967698)(119170501_?)del | Pathogenic |
| 689750 | NM_005188.4(CBL):c.1096-2A>T | Pathogenic |
| 1053208 | NM_005188.4(CBL):c.1100A>G (p.Gln367Arg) | Likely pathogenic |
| 1334208 | NM_005188.4(CBL):c.1516C>T (p.Arg506Ter) | Likely pathogenic |
| 1334287 | NM_005188.4(CBL):c.1930G>T (p.Asp644Tyr) | Likely pathogenic |
| 1386412 | NM_005188.4(CBL):c.1259G>T (p.Arg420Leu) | Likely pathogenic |
| 1427090 | NM_005188.4(CBL):c.1112_1114del (p.Tyr371del) | Likely pathogenic |
| 1700195 | NM_005188.4(CBL):c.1007+2T>A | Likely pathogenic |
| 1794421 | NM_005188.4(CBL):c.1109_1111dup (p.Leu370_Tyr371insLeu) | Likely pathogenic |
| 2575960 | NM_005188.4(CBL):c.1178T>A (p.Ile393Asn) | Likely pathogenic |
| 2662914 | NM_005188.4(CBL):c.1142G>T (p.Cys381Phe) | Likely pathogenic |
| 3033769 | NM_005188.4(CBL):c.1096-6_1101delinsATTATGAATTTTTTTAAAT | Likely pathogenic |
| 3252722 | NM_005188.4(CBL):c.1228-2A>C | Likely pathogenic |
| 4686183 | NM_005188.4(CBL):c.1237G>T (p.Gly413Cys) | Likely pathogenic |
| 4800612 | NM_005188.4(CBL):c.1192C>A (p.His398Asn) | Likely pathogenic |
| 949693 | NM_005188.4(CBL):c.1112A>T (p.Tyr371Phe) | Likely pathogenic |
SpliceAI
4821 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:119232555:A:G | donor_gain | 1.0000 |
| 11:119232564:G:T | donor_gain | 1.0000 |
| 11:119232583:GAAAA:G | donor_gain | 1.0000 |
| 11:119232587:A:AG | donor_gain | 1.0000 |
| 11:119271718:ATTCT:A | acceptor_gain | 1.0000 |
| 11:119271732:TA:T | acceptor_loss | 1.0000 |
| 11:119271734:GGC:G | acceptor_gain | 1.0000 |
| 11:119271877:GAAAA:G | donor_gain | 1.0000 |
| 11:119271878:AAAA:A | donor_gain | 1.0000 |
| 11:119271878:AAAAG:A | donor_loss | 1.0000 |
| 11:119271879:AAA:A | donor_gain | 1.0000 |
| 11:119271879:AAAGT:A | donor_loss | 1.0000 |
| 11:119271880:AA:A | donor_gain | 1.0000 |
| 11:119271880:AAG:A | donor_loss | 1.0000 |
| 11:119271881:AGTA:A | donor_loss | 1.0000 |
| 11:119271882:G:GG | donor_gain | 1.0000 |
| 11:119271882:GTA:G | donor_loss | 1.0000 |
| 11:119271883:TAAGT:T | donor_loss | 1.0000 |
| 11:119273866:A:AG | acceptor_gain | 1.0000 |
| 11:119273867:G:GG | acceptor_gain | 1.0000 |
| 11:119274020:TTCAG:T | donor_loss | 1.0000 |
| 11:119274021:TCAGG:T | donor_loss | 1.0000 |
| 11:119274023:AGGT:A | donor_loss | 1.0000 |
| 11:119274024:GG:G | donor_loss | 1.0000 |
| 11:119274026:T:A | donor_loss | 1.0000 |
| 11:119274830:A:AG | acceptor_gain | 1.0000 |
| 11:119274831:G:GG | acceptor_gain | 1.0000 |
| 11:119274831:GCC:G | acceptor_gain | 1.0000 |
| 11:119274831:GCCC:G | acceptor_gain | 1.0000 |
| 11:119274831:GCCCT:G | acceptor_gain | 1.0000 |
AlphaMissense
5938 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:119206595:T:A | W60R | 1.000 |
| 11:119206595:T:C | W60R | 1.000 |
| 11:119206602:T:C | L62P | 1.000 |
| 11:119206605:T:A | M63K | 1.000 |
| 11:119206605:T:G | M63R | 1.000 |
| 11:119206607:G:C | D64H | 1.000 |
| 11:119206608:A:T | D64V | 1.000 |
| 11:119232455:G:C | R68P | 1.000 |
| 11:119232460:T:C | C70R | 1.000 |
| 11:119232461:G:A | C70Y | 1.000 |
| 11:119232461:G:T | C70F | 1.000 |
| 11:119232462:T:G | C70W | 1.000 |
| 11:119232476:T:C | L75P | 1.000 |
| 11:119232482:T:A | L77Q | 1.000 |
| 11:119232482:T:C | L77P | 1.000 |
| 11:119232482:T:G | L77R | 1.000 |
| 11:119232484:A:G | K78E | 1.000 |
| 11:119232486:G:C | K78N | 1.000 |
| 11:119232486:G:T | K78N | 1.000 |
| 11:119232489:T:A | N79K | 1.000 |
| 11:119232489:T:G | N79K | 1.000 |
| 11:119232490:A:C | S80R | 1.000 |
| 11:119232492:C:A | S80R | 1.000 |
| 11:119232492:C:G | S80R | 1.000 |
| 11:119232493:C:A | P81T | 1.000 |
| 11:119232493:C:T | P81S | 1.000 |
| 11:119232494:C:A | P81Q | 1.000 |
| 11:119232494:C:G | P81R | 1.000 |
| 11:119232496:C:A | P82T | 1.000 |
| 11:119232496:C:T | P82S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000011748 (11:119287098 A>G), RS1000015438 (11:119274059 T>C,G), RS1000024416 (11:119235700 A>G), RS1000033026 (11:119233346 G>A), RS1000052239 (11:119264776 C>A,G), RS1000092699 (11:119204786 T>C), RS1000142047 (11:119272196 A>G), RS1000151745 (11:119218476 C>T), RS1000163906 (11:119226969 T>C), RS1000207407 (11:119271408 G>A), RS1000220016 (11:119267627 A>G), RS1000228108 (11:119226375 CTG>C), RS1000259142 (11:119226684 C>G,T), RS1000279809 (11:119281528 T>C), RS1000292120 (11:119215487 T>G)
Disease associations
OMIM: gene MIM:165360 | disease phenotypes: MIM:613563, MIM:607785, MIM:163950, MIM:617290, MIM:608093, MIM:614750
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| CBL-related disorder | Definitive | Autosomal dominant |
| juvenile myelomonocytic leukemia | Strong | Autosomal dominant |
| Noonan syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| CBL-related disorder | Definitive | AD |
Mondo (17): RASopathy (MONDO:0021060), CBL-related disorder (MONDO:0013308), juvenile myelomonocytic leukemia (MONDO:0011908), Noonan syndrome and Noonan-related syndrome (MONDO:0020297), hereditary neoplastic syndrome (MONDO:0015356), Noonan syndrome (MONDO:0018997), rhabdomyosarcoma (MONDO:0005212), intellectual disability (MONDO:0001071), epilepsy, early-onset (MONDO:0957599), malignant germ cell tumor of ovary (MONDO:0018171), Noonan syndrome 1 (MONDO:0008104), neurodevelopmental disorder (MONDO:0700092), congenital heart disease (MONDO:0005453), B-lymphoblastic leukemia/lymphoma with hyperdiploidy (MONDO:0035943), DPAGT1-congenital disorder of glycosylation (MONDO:0011964)
Orphanet (13): RASopathy (Orphanet:536391), Noonan syndrome-like disorder with juvenile myelomonocytic leukemia (Orphanet:363972), Juvenile myelomonocytic leukemia (Orphanet:86834), Noonan syndrome and Noonan-related syndrome (Orphanet:98733), Inherited cancer-predisposing syndrome (Orphanet:140162), Noonan syndrome (Orphanet:648), Rhabdomyosarcoma (Orphanet:780), Malignant germ cell tumor of ovary (Orphanet:35807), B-lymphoblastic leukemia/lymphoma with hyperdiploidy (Orphanet:585936), Congenital myasthenic syndrome with glycosylation defect (Orphanet:353327), Congenital myasthenic syndrome (Orphanet:590), DPAGT1-CDG (Orphanet:86309), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
143 total (30 of 143 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000044 | Hypogonadotropic hypogonadism |
| HP:0000078 | Abnormality of the genital system |
| HP:0000179 | Thick lower lip vermilion |
| HP:0000218 | High palate |
| HP:0000252 | Microcephaly |
| HP:0000278 | Retrognathia |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000325 | Triangular face |
| HP:0000337 | Broad forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000391 | Thickened helices |
| HP:0000396 | Overfolded helix |
| HP:0000400 | Macrotia |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000463 | Anteverted nares |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000474 | Thickened nuchal skin fold |
| HP:0000476 | Cystic hygroma |
| HP:0000486 | Strabismus |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000508 | Ptosis |
| HP:0000520 | Proptosis |
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001337_33 | Platelet count | 8.000000e-11 |
| GCST004603_68 | Platelet count | 3.000000e-43 |
| GCST004603_69 | Platelet count | 5.000000e-11 |
| GCST004607_35 | Plateletcrit | 5.000000e-52 |
| GCST004607_36 | Plateletcrit | 3.000000e-32 |
| GCST004611_185 | High light scatter reticulocyte count | 2.000000e-11 |
| GCST004612_119 | High light scatter reticulocyte percentage of red cells | 4.000000e-10 |
| GCST004619_164 | Reticulocyte fraction of red cells | 4.000000e-15 |
| GCST004622_115 | Reticulocyte count | 5.000000e-17 |
| GCST005991_26 | Platelet count | 4.000000e-34 |
| GCST011345_18 | Triglyceride levels | 2.000000e-09 |
| GCST012032_10 | Platelet count | 2.000000e-17 |
| GCST90002385_216 | High light scatter reticulocyte count | 9.000000e-19 |
| GCST90002386_364 | High light scatter reticulocyte percentage of red cells | 4.000000e-17 |
| GCST90002392_362 | Mean corpuscular volume | 1.000000e-12 |
| GCST90002397_406 | Mean spheric corpuscular volume | 1.000000e-17 |
| GCST90002400_478 | Plateletcrit | 7.000000e-76 |
| GCST90002400_479 | Plateletcrit | 6.000000e-55 |
| GCST90002402_394 | Platelet count | 4.000000e-173 |
| GCST90002402_395 | Platelet count | 2.000000e-46 |
| GCST90002405_296 | Reticulocyte count | 2.000000e-24 |
| GCST90002406_330 | Reticulocyte fraction of red cells | 4.000000e-22 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004309 | platelet count |
| EFO:0007985 | platelet crit |
| EFO:0007986 | reticulocyte count |
| EFO:0004530 | triglyceride measurement |
MeSH disease descriptors (10)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D054429 | Leukemia, Myelomonocytic, Juvenile | C04.557.337.539.525; C15.378.190.615.520; C15.378.508.539.525 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D009634 | Noonan Syndrome | C05.660.207.690; C14.240.400.787; C14.280.400.787; C16.131.240.400.784; C16.131.621.207.690; C17.300.690 |
| D012208 | Rhabdomyosarcoma | C04.557.450.590.550.660; C04.557.450.795.550.660 |
| C535748 | Congenital disorder of glycosylation type 1J (supp.) | |
| C537846 | Noonan like syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066351 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
48 potent at pChembl≥5 of 50 total, top 48 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.70 | Ki | 0.2 | nM | CHEMBL6134621 |
| 9.15 | Ki | 0.7 | nM | CHEMBL6120549 |
| 9.05 | Ki | 0.9 | nM | CHEMBL6102700 |
| 8.89 | Ki | 1.3 | nM | CHEMBL6103468 |
| 8.64 | EC50 | 2.3 | nM | CHEMBL6134621 |
| 8.51 | Ki | 3.1 | nM | CHEMBL6147468 |
| 8.46 | Ki | 3.5 | nM | CHEMBL6133335 |
| 8.40 | EC50 | 4 | nM | CHEMBL6102700 |
| 8.30 | Ki | 5 | nM | CHEMBL6133395 |
| 8.30 | Ki | 5 | nM | CHEMBL6134158 |
| 8.24 | EC50 | 5.7 | nM | CHEMBL6120549 |
| 8.18 | Ki | 6.6 | nM | CHEMBL6141556 |
| 7.94 | Ki | 11.4 | nM | CHEMBL6083093 |
| 7.85 | EC50 | 14.2 | nM | CHEMBL6103468 |
| 7.82 | Ki | 15 | nM | CHEMBL6147378 |
| 7.73 | Ki | 18.5 | nM | CHEMBL6103305 |
| 7.65 | EC50 | 22.4 | nM | CHEMBL6143001 |
| 7.59 | Ki | 25.7 | nM | CHEMBL6078127 |
| 7.51 | EC50 | 30.9 | nM | CHEMBL6133395 |
| 7.50 | EC50 | 31.9 | nM | CHEMBL6147468 |
| 7.47 | EC50 | 33.8 | nM | CHEMBL6134158 |
| 7.43 | EC50 | 37.2 | nM | CHEMBL6133335 |
| 7.40 | IC50 | 40 | nM | CHEMBL5568675 |
| 7.40 | IC50 | 40 | nM | CHEMBL5591412 |
| 7.30 | IC50 | 50 | nM | CHEMBL5570218 |
| 7.30 | IC50 | 50 | nM | CHEMBL5565433 |
| 7.16 | EC50 | 68.5 | nM | CHEMBL6141556 |
| 7.10 | IC50 | 80 | nM | CHEMBL5593951 |
| 6.96 | EC50 | 110.5 | nM | CHEMBL6103305 |
| 6.80 | IC50 | 160 | nM | CHEMBL5549968 |
| 6.80 | EC50 | 159.7 | nM | CHEMBL6147378 |
| 6.75 | EC50 | 177 | nM | CHEMBL6083093 |
| 6.72 | IC50 | 190 | nM | CHEMBL5575731 |
| 6.70 | IC50 | 200 | nM | CHEMBL5571356 |
| 6.48 | IC50 | 330 | nM | CHEMBL5595595 |
| 6.48 | IC50 | 330 | nM | CHEMBL5571987 |
| 6.39 | IC50 | 410 | nM | CHEMBL5542469 |
| 6.34 | IC50 | 460 | nM | CHEMBL5573269 |
| 6.33 | EC50 | 468.8 | nM | CHEMBL6078127 |
| 6.24 | IC50 | 580 | nM | CHEMBL5574553 |
| 6.07 | IC50 | 860 | nM | CHEMBL5563999 |
| 6.06 | IC50 | 880 | nM | CHEMBL5592825 |
| 6.02 | IC50 | 960 | nM | CHEMBL5575462 |
| 5.87 | IC50 | 1340 | nM | CHEMBL5569665 |
| 5.77 | IC50 | 1700 | nM | CHEMBL5567426 |
| 5.66 | IC50 | 2200 | nM | CHEMBL5570276 |
| 5.20 | IC50 | 6300 | nM | CHEMBL5571500 |
| 5.18 | IC50 | 6550 | nM | CHEMBL5571480 |
PubChem BioAssay actives
21 with measured affinity, of 24 total; 21 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(2S)-pent-3-yn-2-yl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.0400 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methyltriazol-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.0400 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1S)-1-(1-methylpyrazol-4-yl)ethyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.0500 | uM |
| (2S)-2-[3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-2-oxo-5-(trifluoromethyl)-1-pyridinyl]propanenitrile | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.0500 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1R)-1-(1-methylpyrazol-4-yl)ethyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.0800 | uM |
| 1-but-2-ynyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.1600 | uM |
| 1-[(1-methylimidazol-4-yl)methyl]-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.1900 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methylpyrazol-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.2000 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[[(3S)-1-methylpyrrolidin-3-yl]methyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.3300 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(5-methyl-1,3,4-oxadiazol-2-yl)methyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.3300 | uM |
| 3-[3-[(R)-cyclobutyl-(4-methyl-1,2,4-triazol-3-yl)methyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.4100 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methylpiperidin-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.4600 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.5800 | uM |
| 1-methyl-5-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-3-(trifluoromethyl)-7H-pyrrolo[2,3-b]pyridin-6-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.8600 | uM |
| 1-methyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.8800 | uM |
| 3-[(4-methyl-1,2,4-triazol-3-yl)methyl]-3-[3-[2-oxo-5-(trifluoromethyl)-1H-pyridin-3-yl]phenyl]cyclobutane-1-carbonitrile | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 0.9600 | uM |
| 5-cyclopropyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 1.3400 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethoxy)-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 1.7000 | uM |
| 3-[3-[1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 2.2000 | uM |
| 5-methyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1H-pyridin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 6.3000 | uM |
| 3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyrazin-2-one | 2098912: Inhibition of cCbl (unknown origin) by TR-FRET assay | ic50 | 6.5500 | uM |
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methylmercuric chloride | increases expression, affects cotreatment | 3 |
| Benzo(a)pyrene | increases expression | 3 |
| Acetaminophen | increases expression | 2 |
| Dronabinol | decreases expression, increases expression, affects reaction | 2 |
| FR900359 | decreases phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| geldanamycin | increases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| bisphenol A | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | increases expression | 1 |
| saikosaponin D | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| 4-((3-bromophenyl)amino)-6,7-dimethoxyquinazoline | decreases reaction, increases phosphorylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| torcetrapib | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| tetraarsenic tetrasulfide | affects cotreatment, increases expression | 1 |
| Imatinib Mesylate | affects cotreatment, increases expression | 1 |
| Bortezomib | decreases activity, increases activity, increases reaction | 1 |
| Resveratrol | decreases expression | 1 |
| Arsenic Trioxide | increases reaction, increases expression, decreases activity, increases activity | 1 |
| Vorinostat | decreases expression | 1 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 1 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance | 1 |
| Vehicle Emissions | decreases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 2 binding, 2 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5540670 | Binding | Inhibition of cCbl (unknown origin) by TR-FRET assay | Discovery, Optimization, and Biological Evaluation of Arylpyridones as Cbl-b Inhibitors. — J Med Chem |
| CHEMBL6077616 | Toxicity | Displacement of fluorescent tracer from C-CBL (46 to 435 residues) (unknown origin) preincubated for 15 mins followed by fluorescent tracer addition and measured after 1 hr by HTRF method | Potential Therapeutic Benefit of the Selective Inhibitors of Casitas B Cell Lymphoma-b (CBL-B) in Cancer Immunotherapy. — ACS Med Chem Lett |
Cellosaurus cell lines
9 cell lines: 7 cancer cell line, 1 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2TJ | Abcam HEK293T CBL KO | Transformed cell line | Female |
| CVCL_B8CH | Abcam HCT 116 CBL KO | Cancer cell line | Male |
| CVCL_B8TC | Abcam MCF-7 CBL KO | Cancer cell line | Female |
| CVCL_B9EN | Abcam A-549 CBL KO | Cancer cell line | Male |
| CVCL_D5KT | NPC268 | Cancer cell line | Female |
| CVCL_D7LU | Ubigene A-549 CBL KO | Cancer cell line | Male |
| CVCL_SH05 | HAP1 CBL (-) 1 | Cancer cell line | Male |
| CVCL_VN17 | CHOPi001-A | Induced pluripotent stem cell | Female |
| CVCL_XM45 | HAP1 CBL (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
307 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01339988 | PHASE4 | UNKNOWN | Busulfan and Cyclophosphamide Instead of Total Boby Irradiation (TBI) and Cyclophosphamide for Hematological Malignancies Hematocrit (HCT) |
| NCT00002798 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without Bone Marrow Transplantation in Treating Children With Acute Myelogenous Leukemia or Myelodysplastic Syndrome |
| NCT00152139 | PHASE3 | COMPLETED | Stem Cell Transplantation for Patients With Hematologic Malignancies |
| NCT00186823 | PHASE3 | COMPLETED | Haploidentical Stem Cell Transplantation for Patients With Hematologic Malignancies |
| NCT00450450 | PHASE3 | COMPLETED | Donor Bone Marrow Transplant With or Without G-CSF in Treating Young Patients With Hematologic Cancer or Other Diseases |
| NCT00799461 | PHASE3 | COMPLETED | Internet-Based Program With or Without Telephone-Based Problem-Solving Training in Helping Long-Term Survivors of Hematopoietic Stem Cell Transplant Cope With Late Complications |
| NCT00843882 | PHASE3 | ACTIVE_NOT_RECRUITING | Lenalidomide With or Without Epoetin Alfa in Treating Patients With Myelodysplastic Syndrome and Anemia |
| NCT01241500 | PHASE3 | COMPLETED | Randomized Study of ON 01910.Na in Refractory Myelodysplastic Syndrome Patients With Excess Blasts |
| NCT01305200 | PHASE3 | COMPLETED | Supersaturated Calcium Phosphate Rinse in Preventing Oral Mucositis in Young Patients Undergoing Autologous or Donor Stem Cell Transplant |
| NCT01749111 | PHASE3 | TERMINATED | Comparison Between Cyclophosphamide and Combination of Methotrexate + Calcineurin Inhibitor for GVHD Prophylaxis |
| NCT01928537 | PHASE3 | COMPLETED | Efficacy and Safety of IV Rigosertib in MDS Patients With Excess Blasts Progressing After Azacitidine or Decitabine |
| NCT03306264 | PHASE3 | COMPLETED | Study of ASTX727 vs IV Decitabine in Participants With MDS, CMML, and AML |
| NCT04842604 | PHASE3 | COMPLETED | Continuation Study of B1371019(NCT03416179) and B1371012(NCT02367456) Evaluating Azacitidine With Or Without Glasdegib In Patients With Previously Untreated AML, MDS or CMML |
| NCT05515029 | PHASE3 | ACTIVE_NOT_RECRUITING | Preventing of GVHD With Post-transplantation Cyclophosphamide, Abatacept, Vedolizumab and Calcineurin Inhibitor at Patients With Hemoblastosis |
| NCT06647862 | PHASE3 | RECRUITING | IMM01+Azacitidine VS Placebo +Azacitidine in Patients With Newly Diagnosed Chronic Myelomonocytic Leukemia (CMML1-2) |
| NCT00452725 | PHASE3 | COMPLETED | Effect of MAXOMAT ® on the Growth of Small Children to NOONAN’s Syndrome |
| NCT01529840 | PHASE3 | COMPLETED | Somatropin Effect on Linear Growth and Final Height in Subjects With Noonan Syndrome |
| NCT01529944 | PHASE3 | COMPLETED | Genetic Testing of Noonan Subjects Previously Treated With Norditropin®. An Extension to Trial GHNOO-1658 |
| NCT01927861 | PHASE3 | COMPLETED | Investigating the Long-term Efficacy and Safety of Two Doses of NN-220 (Somatropin) in Short Stature Due to Noonan Syndrome |
| NCT02713945 | PHASE3 | COMPLETED | Treatment With HMG-COA Reductase Inhibitor of Growth and Bone Abnormalities in Children With Noonan Syndrome |
| NCT05723835 | PHASE3 | ACTIVE_NOT_RECRUITING | A Research Study Looking at How Safe Somapacitan is and How Well it Works in Children Who Need Help to Grow - REAL 9 |
| NCT00015990 | PHASE2 | COMPLETED | Thalidomide in Treating Patients With Myelodysplastic Syndrome |
| NCT00025038 | PHASE2 | COMPLETED | Combination Chemotherapy Followed By Donor Bone Marrow or Umbilical Cord Blood Transplant in Treating Children With Newly Diagnosed Juvenile Myelomonocytic Leukemia |
| NCT00039416 | PHASE2 | COMPLETED | Imatinib Mesylate in Treating Patients With Myelofibrosis |
| NCT00067808 | PHASE2 | COMPLETED | Study of Three Different Schedules of Low-Dose Decitabine in Myelodysplastic Syndrome (MDS) |
| NCT00079313 | PHASE2 | COMPLETED | Imatinib (Gleevec(Registered Trademark)) to Treat Chronic Myelomonocytic Leukemia and Atypical Chronic Myelogenous Leukemia |
| NCT00084916 | PHASE2 | COMPLETED | CCI-779 in Treating Patients With Relapsed or Refractory Acute Myeloid Leukemia, Acute Lymphoblastic Leukemia, Myelodysplastic Syndromes, or Chronic Myelogenous Leukemia in Blastic Phase |
| NCT00113321 | PHASE2 | TERMINATED | Low-Dose Decitabine in Myelodysplastic Syndrome Post Azacytidine Failure |
| NCT00118352 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine Phosphate, and Total-Body Irradiation Followed by Cyclosporine and Mycophenolate Mofetil in Treating Patients Who Are Undergoing Donor Stem Cell Transplant for Hematologic Cancer |
| NCT00119366 | PHASE2 | TERMINATED | Iodine I 131 Monoclonal Antibody BC8, Fludarabine Phosphate, Total Body Irradiation, and Donor Stem Cell Transplant Followed by Cyclosporine and Mycophenolate Mofetil in Treating Patients With Advanced Acute Myeloid Leukemia or Myelodysplastic Syndrome |
| NCT00136409 | PHASE2 | COMPLETED | A Study of Gleevec in Patients With Idiopathic Myelofibrosis or Chronic Myelomonocytic Leukemia (CMML) |
| NCT00143559 | PHASE2 | COMPLETED | Stem Cell Transplantation as Immunotherapy for Hematologic Malignancies |
| NCT00145613 | PHASE2 | COMPLETED | Haploidentical Stem Cell Transplant for Treatment Refractory Hematological Malignancies |
| NCT00171912 | PHASE2 | COMPLETED | Imatinib Mesylate in Patients With Various Types of Malignancies Involving Activated Tyrosine Kinase Enzymes |
| NCT00299156 | PHASE2 | COMPLETED | Oral Clofarabine Study in Patients With Myelodysplastic Syndrome |
| NCT00309907 | PHASE2 | COMPLETED | Etanercept in Treating Young Patients With Idiopathic Pneumonia Syndrome After Undergoing a Donor Stem Cell Transplant |
| NCT00313586 | PHASE2 | COMPLETED | Azacitidine With or Without Entinostat in Treating Patients With Myelodysplastic Syndromes, Chronic Myelomonocytic Leukemia, or Acute Myeloid Leukemia |
| NCT00381550 | PHASE2 | COMPLETED | 3-AP and Fludarabine in Treating Patients With Myeloproliferative Disorders, Chronic Myelomonocytic Leukemia, or Accelerated Phase or Blastic Phase Chronic Myelogenous Leukemia |
| NCT00387426 | PHASE2 | TERMINATED | Sunitinib in Treating Patients With Idiopathic Myelofibrosis |
| NCT00397813 | PHASE2 | COMPLETED | Fludarabine Phosphate and Total Body Irradiation Followed by a Donor Peripheral Stem Cell Transplant in Treating Patients With Myelodysplastic Syndromes or Myeloproliferative Disorders |
Related Atlas pages
- Associated diseases: CBL-related disorder, juvenile myelomonocytic leukemia, Noonan syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): B-lymphoblastic leukemia/lymphoma with hyperdiploidy, CBL-related disorder, congenital myasthenic syndrome 13, DPAGT1-congenital disorder of glycosylation, epilepsy, early-onset, hereditary neoplastic syndrome, juvenile myelomonocytic leukemia, malignant germ cell tumor of ovary, Noonan syndrome, Noonan syndrome 1, Noonan syndrome and Noonan-related syndrome, RASopathy, rhabdomyosarcoma