CBL

gene
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Also known as RNF55c-Cbl

Summary

CBL (Cbl proto-oncogene, HGNC:1541) is a protein-coding gene on chromosome 11q23.3, encoding E3 ubiquitin-protein ligase CBL (P22681). E3 ubiquitin-protein ligase that acts as a negative regulator of many signaling pathways by mediating ubiquitination of cell surface receptors.

This gene is a proto-oncogene that encodes a RING finger E3 ubiquitin ligase. The encoded protein is one of the enzymes required for targeting substrates for degradation by the proteasome. This protein mediates the transfer of ubiquitin from ubiquitin conjugating enzymes (E2) to specific substrates. This protein also contains an N-terminal phosphotyrosine binding domain that allows it to interact with numerous tyrosine-phosphorylated substrates and target them for proteasome degradation. As such it functions as a negative regulator of many signal transduction pathways. This gene has been found to be mutated or translocated in many cancers including acute myeloid leukaemia, and expansion of CGG repeats in the 5’ UTR has been associated with Jacobsen syndrome. Mutations in this gene are also the cause of Noonan syndrome-like disorder.

Source: NCBI Gene 867 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): CBL-related disorder (Definitive, ClinGen) — +2 more curated relationships
  • GWAS associations: 22
  • Clinical variants (ClinVar): 2,431 total — 12 pathogenic, 14 likely-pathogenic
  • Phenotypes (HPO): 143
  • Druggable target: yes
  • Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 3 cancer types
  • Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
  • MANE Select transcript: NM_005188

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1541
Approved symbolCBL
NameCbl proto-oncogene
Location11q23.3
Locus typegene with protein product
StatusApproved
AliasesRNF55, c-Cbl
Ensembl geneENSG00000110395
Ensembl biotypeprotein_coding
OMIM165360
Entrez867

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 5 protein_coding, 1 nonsense_mediated_decay

ENST00000264033, ENST00000634301, ENST00000634586, ENST00000634840, ENST00000637974, ENST00000700472

RefSeq mRNA: 1 — MANE Select: NM_005188 NM_005188

CCDS: CCDS8418

Canonical transcript exons

ENST00000264033 — 16 exons

ExonStartEnd
ENSE00000796209119284969119285100
ENSE00000796211119287852119287946
ENSE00000796212119296918119297034
ENSE00000796213119297384119297481
ENSE00000796214119298358119298540
ENSE00001128273119278510119278713
ENSE00001128289119277757119277844
ENSE00001206751119285189119285566
ENSE00001238481119299495119308149
ENSE00001240776119275997119276134
ENSE00001240782119274832119274953
ENSE00001240790119273868119274024
ENSE00001240795119271735119271881
ENSE00001240799119232448119232695
ENSE00001240819119206339119206612
ENSE00001795866119278166119278297

Expression profiles

Bgee: expression breadth ubiquitous, 271 present calls, max score 93.28.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.1189 / max 461.1191, expressed in 1794 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
1171089.22721757
1171054.59801473
1171072.07911203
1171060.214656

Top tissues by expression

297 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099193.28gold quality
trigeminal ganglionUBERON:000167591.77gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047391.74gold quality
trabecular bone tissueUBERON:000248391.00gold quality
saphenous veinUBERON:000731889.97gold quality
dorsal root ganglionUBERON:000004489.80gold quality
superficial temporal arteryUBERON:000161489.66gold quality
nippleUBERON:000203089.52gold quality
bloodUBERON:000017889.41gold quality
visceral pleuraUBERON:000240189.14gold quality
gingival epitheliumUBERON:000194988.95gold quality
ventricular zoneUBERON:000305388.70gold quality
superior vestibular nucleusUBERON:000722788.70gold quality
medial globus pallidusUBERON:000247788.68gold quality
inferior vagus X ganglionUBERON:000536388.63gold quality
subthalamic nucleusUBERON:000190688.48gold quality
lower lobe of lungUBERON:000894988.37gold quality
adult organismUBERON:000702388.08gold quality
globus pallidusUBERON:000187587.93gold quality
pylorusUBERON:000116687.77gold quality
Brodmann (1909) area 23UBERON:001355487.74gold quality
monocyteCL:000057687.68gold quality
cardia of stomachUBERON:000116287.53gold quality
ventral tegmental areaUBERON:000269187.52gold quality
leukocyteCL:000073887.37gold quality
mononuclear cellCL:000084287.33gold quality
parietal pleuraUBERON:000240087.04gold quality
substantia nigra pars compactaUBERON:000196586.95gold quality
gingivaUBERON:000182886.92gold quality
synovial jointUBERON:000221786.88gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes7.29

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): EGR2, STAT2

miRNA regulators (miRDB)

413 targeting CBL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3646100.0073.565283
HSA-MIR-8485100.0077.574731
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-5692A100.0074.406850
HSA-MIR-4533100.0069.482758
HSA-MIR-4747-5P100.0067.902681
HSA-MIR-5196-5P100.0067.982761
HSA-MIR-188-3P100.0068.761240
HSA-MIR-12118100.0065.881270
HSA-MIR-4476100.0068.182030
HSA-MIR-6876-5P100.0067.682126
HSA-MIR-3163100.0077.238605
HSA-MIR-3925-3P100.0069.951237
HSA-MIR-6758-5P100.0066.211470
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-6856-5P100.0065.471298
HSA-MIR-9-5P100.0072.282361
HSA-MIR-150-5P99.9966.691976
HSA-MIR-366299.9973.825684
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-3667-3P99.9967.171636
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-186-5P99.9970.833707
HSA-MIR-607799.9968.042299
HSA-MIR-118499.9968.191458
HSA-MIR-450099.9972.722367
HSA-MIR-616-5P99.9875.584775

Functional genomics

ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • novel E3 ubiquitin-protein ligase; role in regulation of immune response - review (PMID:11826757)
  • Cbl-CIN85-endophilin complex mediates ligand-induced downregulation of EGF receptors (PMID:11894095)
  • The endophilin-CIN85-Cbl complex mediates ligand-dependent downregulation of c-Met (PMID:11894096)
  • Negative regulation of Lck by Cbl ubiquitin ligase (PMID:11904433)
  • Cbl-b protein and CIN85 downregulate receptor tyrosine kinases (PMID:12177062)
  • Cbl-directed monoubiquitination of CIN85 is involved in regulation of ligand-induced degradation of EGF receptors. (PMID:12218189)
  • complexation with ArgBP2 mediates ubiquitination and degradation of c-Abl (PMID:12475393)
  • c-Cbl-dependent EphA2 protein degradation is induced by ligand binding. (PMID:12496371)
  • MLL-CBL fusion was the result of an interstitial deletion in patients with de novo acute myeloid leukemia (FAB-M1). (PMID:12696071)
  • Ron tyrosine kinase receptor desensitization mediated by c-Cbl and its binding partner Grb2. (PMID:12802274)
  • c-cbl binds to hSpry2, and this interaction is critical for its physiological function in a signal-specific context (PMID:12815057)
  • Cbl has a role, via its ubiquitin ligase activity, as a negative regulator of activated Vav (PMID:12881521)
  • Lower expression of cbl is associated with acute myeloid leukemia-M2 and higher expression of cbl is associated with acute myeloid leukemia-M5 (PMID:14738146)
  • the c-Cbl/CD2AP complex binds to activated Flt-1 and plays a crucial role in its endocytosis and subsequent degradation. (PMID:15001553)
  • Recruitment of CBL to lipid rafts mediates signals important for actin reorganization in growing neurites. (PMID:15128873)
  • Sts-1 and Sts-2 bind to Cbl and inhibit endocytosis of receptor tyrosine kinases (PMID:15159412)
  • CBL has a role in down-regulation of Lyn and Fyn in osteoblast differentiation induced by constitutive FGFR2 activation (PMID:15190072)
  • c-Cbl has a role in EGFR trafficking (PMID:15210722)
  • Differences in ubiquitin-binding may reflect distinct regulatory functions of c-Cbl and Cbl-b. (PMID:15273720)
  • c-Cbl-dependent ubiquitination of p75NTR involved in the regulation of p75NTR signalling. (PMID:15337528)
  • c-Cbl guides the epidermal growth factor receptor into clathrin-coated pits by two distinct modes of Eps15 recruitment (PMID:15465819)
  • Grb2-mediated recruitment of the functional RING domain of Cbl to the EGFR is essential and sufficient to support receptor endocytosis (PMID:15635092)
  • mediates ubiquitination and lysosomal degradation of PAR(2) to irrevocably terminate its signaling (PMID:15708858)
  • the alpha5 integrin subunit has a role in the induction of apoptosis triggered by FGFR2 activation in osteoblasts, and a Cbl-dependent mechanism is involved in the coordinated regulation of cell apoptosis induced by alpha5 integrin degradation (PMID:15728256)
  • Data show that infected cell protein 0 (ICP0) binds CIN85 in a reciprocal manner and that the complexes pulled down by ICP0 also contain Cbl. (PMID:15824310)
  • dynamin, Cbl, and Src coordinately participate in signaling complexes that are important in the assembly and remodeling of the actin cytoskeleton, leading to changes in osteoclast adhesion, migration, and resorption (PMID:15872089)
  • Results suggest a novel function for c-Cbl, microtubule binding and stabilization. (PMID:15878338)
  • Cbl promotes clustering of endocytic adaptor proteins. (PMID:16228008)
  • EGF-R fate is controlled by a checkpoint downstream of receptor ubiquitination whose regulation by the Cbl RF tail may require Sprouty2 degradation. (PMID:16246327)
  • CD21 activation triggered Cbl tyrosine phosphorylation, which interacts with SH2 domains of p85 subunit, SH2 domains of Crk-L and with tyrosine phosphorylated Syk kinase. CD21 activation triggers dissociation of Cbl-Vav complex. (PMID:16289966)
  • the SH3 domain of betaPix specifically interacts with a proline-arginine motif (PxxxPR) present within the ubiquitin ligase Cbl and Pak1 kinase. Cbl and Pak1 compete for binding to betaPix. (PMID:16407834)
  • results implicate CD45, Cbl, Cbl-b, src kinases and potentially other associated proteins as mediators of SDF-1alpha/CXCL12-induced cell migration of Jurkat T cells (PMID:16503409)
  • ubiquitin ligase of EGFR, namely c-Cbl, also mediates receptor modification with the ubiquitin-like molecule Nedd8 (PMID:16735510)
  • By lysing primary hemopoietic cells at high pH, BCR-ABL1 protein-degradative activity was inhibited & association between BCR-ABL1 protein in complexes with adaptor proteins CBL, CRKL & GRB2 in primary chronic myeloid leukaemia material was demonstrated (PMID:16955467)
  • Twist haploinsufficiency results in decreased Cbl-mediated PI3K degradation in osteoblasts. (PMID:17003487)
  • Alix inhibits down-regulation of PDGFRbeta by modulating the interaction between c-Cbl and the receptor, thereby affecting the ubiquitination of the receptor (PMID:17082185)
  • Depletion of Cbl and Cbl-b E3 ubiquitin ligases by RNA interference, or overexpression of a Cbl dominant inhibitory mutant (Cbl-N), inhibited Spred-2 ubiquitination. (PMID:17094949)
  • The interaction between c-Cbl and SLAP in v-Abl-3T3 cells positively influenced c-Cbl-mediated spreading and adhesion of these cells (PMID:17237826)
  • corecruitment of c-Cbl and PLCgamma1 to VEGFR-2 serves as a mechanism to fine-tune the angiogenic signal relay of VEGFR-2 (PMID:17372230)
  • novel mutations in c-CBL and CBL-b have been identified in human acute myeloid leukemia (PMID:17475912)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriocblENSDARG00000009958
mus_musculusCblENSMUSG00000034342
rattus_norvegicusCblENSRNOG00000008444

Paralogs (2): CBLB (ENSG00000114423), CBLC (ENSG00000142273)

Protein

Protein identifiers

E3 ubiquitin-protein ligase CBLP22681 (reviewed: P22681)

Alternative names: Casitas B-lineage lymphoma proto-oncogene, Proto-oncogene c-Cbl, RING finger protein 55, RING-type E3 ubiquitin transferase CBL, Signal transduction protein CBL

All UniProt accessions (6): P22681, A0A0U1RQX8, A0A0U1RR39, A0A0U1RRJ5, A0A1B0GW38, A0A8V8TQA9

UniProt curated annotations — full annotation on UniProt →

Function. E3 ubiquitin-protein ligase that acts as a negative regulator of many signaling pathways by mediating ubiquitination of cell surface receptors. Accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by the proteasome. Recognizes activated receptor tyrosine kinases, including KIT, FLT1, FGFR1, FGFR2, PDGFRA, PDGFRB, CSF1R, EPHA8 and KDR and mediates their ubiquitination to terminate signaling. Recognizes membrane-bound HCK, SRC and other kinases of the SRC family and mediates their ubiquitination and degradation. Ubiquitinates EGFR and SPRY2. Involved in LAG3-mediated inhibition of TCR signaling: following ligand-binding to LAG3, catalyzes ‘Lys-63’-linked ubiquitination of LAG3, unleashing the LAG3 C-terminus from the membrane, and initiating a signaling that prevents TCR activation. Ubiquitinates NECTIN1 following association between NECTIN1 and herpes simplex virus 1/HHV-1 envelope glycoprotein D, leading to NECTIN1 removal from cell surface. Participates in signal transduction in hematopoietic cells. Plays an important role in the regulation of osteoblast differentiation and apoptosis. Essential for osteoclastic bone resorption. The ‘Tyr-731’ phosphorylated form induces the activation and recruitment of phosphatidylinositol 3-kinase to the cell membrane in a signaling pathway that is critical for osteoclast function. In association with CBLB, required for proper feedback inhibition of ciliary platelet-derived growth factor receptor-alpha (PDGFRA) signaling pathway via ubiquitination and internalization of PDGFRA.

Subunit / interactions. Forms homodimers; IFT20 promotes the formation of stable homodimers. Interacts (phosphorylated at Tyr-731) with PIK3R1. Associates with NCK via its SH3 domain. The phosphorylated C-terminus interacts with CD2AP via its second SH3 domain. Binds to UBE2L3. Interacts with adapters SLA, SLA2 and with the phosphorylated C-terminus of SH2B2. Interacts with EGFR, SYK and ZAP70 via the highly conserved Cbl-N region. Also interacts with SORBS1 and INPPL1/SHIP2. Interacts with phosphorylated LAT2. Interacts with CBLB. Interacts with ALK, AXL, BLK, FGR and FGFR2. Interacts with CSF1R, EPHB1, FLT1, KDR, PDGFRA and PDGFRB; regulates receptor degradation through ubiquitination. Interacts with HCK and LYN. Interacts with ATX2. Interacts with TEK/TIE2 (tyrosine phosphorylated). Interacts with SH3KBP1 and this interaction is inhibited in the presence of SHKBP1 or ARAP1. Interacts with SIGLEC10. Interacts with IFT20. Interacts with SPRY2; the interaction inhibits CBL-mediated ubiquitination of EGFR. Interacts (phosphorylated at Tyr-774) with tensin TNS4 (via SH2 domain); the interaction is enhanced in the presence of EGF and reduces interaction of CBL with EGFR. Interacts with EGFR; the interaction is reduced in the presence of TNS4. Interacts with CD5. Interacts with CD93. (Microbial infection) Interacts with M.tuberculosis LpqN, which influences the balance between intrinsic antibacterial and antiviral defense.

Subcellular location. Cytoplasm. Cell membrane. Cell projection. Cilium. Golgi apparatus.

Post-translational modifications. Phosphorylated on tyrosine residues by ALK, EGFR, SYK, FYN and ZAP70. Phosphorylated on tyrosine residues in response to FLT1 and KIT signaling. Phosphorylated on tyrosine residues by INSR and FGR. Phosphorylated on several tyrosine residues by constitutively activated FGFR3. Not phosphorylated at Tyr-731 by FGFR3. Phosphorylated on tyrosine residues by activated CSF1R, PDGFRA and PDGFRB. Phosphorylated on tyrosine residues by HCK. Ubiquitinated, leading to its degradation via the proteasome. Ubiquitination is negatively regulated by IFT20.

Disease relevance. Noonan syndrome-like disorder with or without juvenile myelomonocytic leukemia (NSLL) [MIM:613563] A syndrome characterized by a phenotype reminiscent of Noonan syndrome. Clinical features are highly variable, including facial dysmorphism, short neck, developmental delay, hyperextensible joints and thorax abnormalities with widely spaced nipples. The facial features consist of triangular face with hypertelorism, large low-set ears, ptosis, and flat nasal bridge. Some patients manifest cardiac defects. Some have an increased risk for certain malignancies, particularly juvenile myelomonocytic leukemia. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The RING-type zinc finger domain mediates binding to an E2 ubiquitin-conjugating enzyme. The N-terminus is composed of the phosphotyrosine binding (PTB) domain, a short linker region and the RING-type zinc finger. The PTB domain, which is also called TKB (tyrosine kinase binding) domain, is composed of three different subdomains: a four-helix bundle (4H), a calcium-binding EF hand and a divergent SH2 domain.

Pathway. Protein modification; protein ubiquitination.

Miscellaneous. This protein has one functional calcium-binding site.

RefSeq proteins (1): NP_005179* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001841Znf_RINGDomain
IPR003153Adaptor_Cbl_N_hlxDomain
IPR009060UBA-like_sfHomologous_superfamily
IPR011992EF-hand-dom_pairHomologous_superfamily
IPR013083Znf_RING/FYVE/PHDHomologous_superfamily
IPR014741Adaptor_Cbl_EF_hand-likeDomain
IPR014742Adaptor_Cbl_SH2-likeDomain
IPR015940UBADomain
IPR017907Znf_RING_CSConserved_site
IPR018957Znf_C3HC4_RING-typeDomain
IPR024159Cbl_PTBDomain
IPR024162Adaptor_CblFamily
IPR036537Adaptor_Cbl_N_dom_sfHomologous_superfamily
IPR036860SH2_dom_sfHomologous_superfamily

Pfam: PF00097, PF00627, PF02262, PF02761, PF02762

Enzyme classification (BRENDA):

  • EC 2.3.2.27 — RING-type E3 ubiquitin transferase (BRENDA: 28 organisms, 138 substrates, 10 inhibitors, 1 Km, 1 kcat entries)

Substrate kinetics (BRENDA)

1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
[UBE2W]-S-UBIQUITINYL-L-CYSTEINE0.30141

UniProt features (113 total): helix 24, strand 17, region of interest 14, modified residue 13, mutagenesis site 12, sequence variant 11, turn 6, binding site 6, compositionally biased region 5, domain 2, chain 1, zinc finger region 1, sequence conflict 1

Structure

Experimental structures (PDB)

33 structures, top 30 by resolution.

PDBMethodResolution (Å)
3BUXX-RAY DIFFRACTION1.35
3BUWX-RAY DIFFRACTION1.45
7SIYX-RAY DIFFRACTION1.48
5HKYX-RAY DIFFRACTION1.8
5HKZX-RAY DIFFRACTION1.8
5HKXX-RAY DIFFRACTION1.85
3PLFX-RAY DIFFRACTION1.92
2Y1NX-RAY DIFFRACTION2
3BUMX-RAY DIFFRACTION2
3BUNX-RAY DIFFRACTION2
9ERZX-RAY DIFFRACTION2.02
1YVHX-RAY DIFFRACTION2.05
2CBLX-RAY DIFFRACTION2.1
2OO9X-RAY DIFFRACTION2.1
3OB2X-RAY DIFFRACTION2.1
1B47X-RAY DIFFRACTION2.2
3OB1X-RAY DIFFRACTION2.2
5HL0X-RAY DIFFRACTION2.2
4A49X-RAY DIFFRACTION2.21
5HKWX-RAY DIFFRACTION2.25
5O76X-RAY DIFFRACTION2.47
6XARX-RAY DIFFRACTION2.5
3BUOX-RAY DIFFRACTION2.6
2Y1MX-RAY DIFFRACTION2.67
4A4CX-RAY DIFFRACTION2.7
4A4BX-RAY DIFFRACTION2.79
5J3XX-RAY DIFFRACTION2.82
1FBVX-RAY DIFFRACTION2.9
6O02X-RAY DIFFRACTION2.95
4GPLX-RAY DIFFRACTION3

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P22681-F164.270.36

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (6): 229; 231; 233; 235; 240; 294

Post-translational modifications (13): 371, 439, 452, 483, 619, 642, 668, 669, 674, 700, 731, 774, 900

Mutagenesis-validated functional residues (12):

PositionPhenotype
80abolishes interaction with zap70.
82abolishes interaction with zap70.
229abolishes interaction with zap70.
240abolishes interaction with zap70.
294abolishes interaction with zap70.
306abolishes interaction with zap70 and ephb1, but does not affect interaction with sla. reduces ubiquitination and therefo
371strongly reduces tyrosine phosphorylation by insr; when associated with f-700 and f-774.
381loss of ubiquitin ligase activity.
674does not affect interaction with tns4 following egf stimulation.
700does not affect interaction with tns4 following egf stimulation. strongly reduces tyrosine phosphorylation by insr; when
731no effect on tyrosine phosphorylation by insr. loss of phosphorylation by src. inhibition of bone resorption. abolishes
774loss of interaction with tns4 following egf stimulation. strongly reduces tyrosine phosphorylation by insr; when associa

Function

Pathways and Gene Ontology

Reactome pathways

51 pathways

IDPathway
R-HSA-1059683Interleukin-6 signaling
R-HSA-1236382Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants
R-HSA-1295596Spry regulation of FGF signaling
R-HSA-1433559Regulation of KIT signaling
R-HSA-182971EGFR downregulation
R-HSA-2173789TGF-beta receptor signaling activates SMADs
R-HSA-5637810Constitutive Signaling by EGFRvIII
R-HSA-5654726Negative regulation of FGFR1 signaling
R-HSA-5654727Negative regulation of FGFR2 signaling
R-HSA-5654732Negative regulation of FGFR3 signaling
R-HSA-5654733Negative regulation of FGFR4 signaling
R-HSA-6807004Negative regulation of MET activity
R-HSA-8849469PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1
R-HSA-8856825Cargo recognition for clathrin-mediated endocytosis
R-HSA-8856828Clathrin-mediated endocytosis
R-HSA-8875360InlB-mediated entry of Listeria monocytogenes into host cell
R-HSA-912631Regulation of signaling by CBL
R-HSA-9680350Signaling by CSF1 (M-CSF) in myeloid cells
R-HSA-9706369Negative regulation of FLT3
R-HSA-9706377FLT3 signaling by CBL mutants
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-1433557Signaling by SCF-KIT
R-HSA-162582Signal Transduction
R-HSA-1643685Disease
R-HSA-1643713Signaling by EGFR in Cancer
R-HSA-168256Immune System
R-HSA-170834Signaling by TGF-beta Receptor Complex
R-HSA-177929Signaling by EGFR
R-HSA-190236Signaling by FGFR
R-HSA-199991Membrane Trafficking

MSigDB gene sets: 763 (showing top): GSE45365_NK_CELL_VS_BCELL_UP, GOBP_PLATELET_DERIVED_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GGGACCA_MIR133A_MIR133B, GOBP_REGULATION_OF_CELL_ACTIVATION, AGGAAGC_MIR5163P, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, REACTOME_INTERLEUKIN_6_SIGNALING, GOBP_RESPONSE_TO_ETHANOL, GOBP_RESPONSE_TO_IONIZING_RADIATION, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_REGULATION_OF_ERBB_SIGNALING_PATHWAY, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE

GO Biological Process (34): ubiquitin-dependent protein catabolic process (GO:0006511), protein monoubiquitination (GO:0006513), DNA damage response (GO:0006974), signal transduction (GO:0007165), male gonad development (GO:0008584), response to gamma radiation (GO:0010332), response to activity (GO:0014823), protein ubiquitination (GO:0016567), cytokine-mediated signaling pathway (GO:0019221), regulation of Rap protein signal transduction (GO:0032487), response to testosterone (GO:0033574), cellular response to platelet-derived growth factor stimulus (GO:0036120), negative regulation of epidermal growth factor receptor signaling pathway (GO:0042059), response to starvation (GO:0042594), negative regulation of apoptotic process (GO:0043066), mast cell degranulation (GO:0043303), response to ethanol (GO:0045471), positive regulation of epidermal growth factor receptor signaling pathway (GO:0045742), symbiont entry into host cell (GO:0046718), positive regulation of receptor-mediated endocytosis (GO:0048260), protein stabilization (GO:0050821), negative regulation of T cell receptor signaling pathway (GO:0050860), negative regulation of T cell activation (GO:0050868), protein autoubiquitination (GO:0051865), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), ubiquitin-dependent endocytosis (GO:0070086), protein K63-linked ubiquitination (GO:0070534), cellular response to hypoxia (GO:0071456), cellular response to nerve growth factor stimulus (GO:1990090), regulation of platelet-derived growth factor receptor-alpha signaling pathway (GO:2000583), protein polyubiquitination (GO:0000209), cell surface receptor signaling pathway (GO:0007166), regulation of signaling (GO:0023051), regulation of intracellular signal transduction (GO:1902531)

GO Molecular Function (15): phosphotyrosine residue binding (GO:0001784), ubiquitin-protein transferase activity (GO:0004842), calcium ion binding (GO:0005509), zinc ion binding (GO:0008270), SH3 domain binding (GO:0017124), receptor tyrosine kinase binding (GO:0030971), phosphatidylinositol 3-kinase regulatory subunit binding (GO:0036312), cadherin binding (GO:0045296), ephrin receptor binding (GO:0046875), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), transferase activity (GO:0016740), protein kinase binding (GO:0019901), metal ion binding (GO:0046872), protein tyrosine kinase binding (GO:1990782)

GO Cellular Component (14): Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), focal adhesion (GO:0005925), cilium (GO:0005929), flotillin complex (GO:0016600), growth cone (GO:0030426), membrane raft (GO:0045121), perinuclear region of cytoplasm (GO:0048471), sperm end piece (GO:0097229), cytoplasm (GO:0005737), membrane (GO:0016020), axon (GO:0030424), cell projection (GO:0042995)

Reactome top-level categories

Rollup of top-23 pathways:

CategoryPathways
Interleukin-6 family signaling1
Signaling by Ligand-Responsive EGFR Variants in Cancer1
Negative regulation of FGFR1 signaling1
Negative regulation of FGFR2 signaling1
Negative regulation of FGFR3 signaling1
Negative regulation of FGFR4 signaling1
Signaling by SCF-KIT1
Signaling by EGFR1
Signaling by TGF-beta Receptor Complex1
Signaling by EGFRvIII in Cancer1
Signaling by FGFR11
Signaling by FGFR21
Signaling by FGFR31
Signaling by FGFR41
Signaling by MET1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure6
cytoplasm3
protein ubiquitination2
epidermal growth factor receptor signaling pathway2
regulation of epidermal growth factor receptor signaling pathway2
signaling receptor binding2
modification-dependent protein catabolic process1
cellular response to stress1
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
gonad development1
development of primary male sexual characteristics1
response to ionizing radiation1
response to stimulus1
protein modification by small protein conjugation1
cell surface receptor signaling pathway1
cellular response to cytokine stimulus1
Rap protein signal transduction1
regulation of small GTPase mediated signal transduction1
response to lipid1
response to ketone1
response to platelet-derived growth factor1
cellular response to growth factor stimulus1
negative regulation of ERBB signaling pathway1
response to stress1
response to nutrient levels1
apoptotic process1
regulation of apoptotic process1
negative regulation of programmed cell death1
mast cell activation involved in immune response1
mast cell mediated immunity1
lysosome localization1
leukocyte degranulation1
establishment of organelle localization1
response to alcohol1
positive regulation of ERBB signaling pathway1
viral life cycle1

Protein interactions and networks

STRING

2650 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CBLGRB2P29354996
CBLSH3KBP1Q96B97996
CBLEGFRP00533995
CBLSRCP12931993
CBLCRKLP46109993
CBLCRKP46108992
CBLRAPGEF1Q13905987
CBLZAP70P43403975
CBLFYNP06241961
CBLSHC1P29353940
CBLLCP2Q13094931
CBLSORBS1Q9BX66930
CBLSYKP43405926
CBLTCN1P20061911
CBLCD2APQ9Y5K6910

IntAct

444 interactions, top by confidence:

ABTypeScore
CBLSH3KBP1psi-mi:“MI:0915”(physical association)0.980
SH3KBP1CBLpsi-mi:“MI:0915”(physical association)0.980
SH3KBP1CBLpsi-mi:“MI:0914”(association)0.980
CBLGRB2psi-mi:“MI:0915”(physical association)0.960
GRB2CBLpsi-mi:“MI:0915”(physical association)0.960
EGFRCBLpsi-mi:“MI:0915”(physical association)0.960
CBLEGFRpsi-mi:“MI:0915”(physical association)0.960
CBLEGFRpsi-mi:“MI:0407”(direct interaction)0.960
PIK3R1CBLpsi-mi:“MI:0915”(physical association)0.940
CBLPIK3R1psi-mi:“MI:0915”(physical association)0.940
NPHP1NPHP4psi-mi:“MI:2364”(proximity)0.930
CBLCRKpsi-mi:“MI:0915”(physical association)0.920
CRKCBLpsi-mi:“MI:0915”(physical association)0.920
CRKLCBLpsi-mi:“MI:0915”(physical association)0.870
CBLMETpsi-mi:“MI:2364”(proximity)0.860
CBLSPRY2psi-mi:“MI:0914”(association)0.860
YWHABPIK3C2Apsi-mi:“MI:0914”(association)0.800
CBLCD2APpsi-mi:“MI:0915”(physical association)0.800
CBLYWHAEpsi-mi:“MI:0915”(physical association)0.770
GRB2WIPF3psi-mi:“MI:0914”(association)0.730

BioGRID (1481): CBL (Affinity Capture-Western), CBL (Affinity Capture-Western), SIRT2 (Affinity Capture-Western), CBL (Affinity Capture-Western), ABL1 (Biochemical Activity), BCR (Biochemical Activity), CBL (Affinity Capture-Western), CBL (Reconstituted Complex), CBL (Affinity Capture-Western), CBL (Reconstituted Complex), CBL (Affinity Capture-Western), TGFBR2 (Biochemical Activity), UBE2M (Reconstituted Complex), UBC (Co-crystal Structure), EGFR (Biochemical Activity)

ESM2 similar proteins: A1YFY6, A2T6X9, A6H7I8, B2RUJ5, F1M5F3, F1N2W9, O35430, O35431, O95487, O95628, O95644, P0C6S7, P14316, P17863, P22681, P22682, P23798, P23906, P35227, P81133, P98084, Q02410, Q0IHY4, Q13469, Q14190, Q14432, Q1L994, Q3UR85, Q52L14, Q5CD77, Q5RD33, Q60591, Q61045, Q61079, Q66JB6, Q69ZT9, Q6NRE7, Q6QB00, Q8BIZ1, Q8BT14

Diamond homologs: G3V8H4, P22681, P22682, P23092, Q13191, Q3TTA7, Q6DFR2, Q6GQL0, Q6NRE7, Q80XL1, Q8K4S7, Q9ULV8, A0A1L8FG46, A0A1L8FM16, B1AUE5, C0HBT3, C0HKD7, D2H0Y8, E1B7X3, O60683, O64425, P87176, P93030, Q09463, Q1ACD5, Q28GL3, Q2PFU6, Q3T139, Q3UF64, Q587N7, Q5C8U1, Q5C8U3, Q5C8U4, Q5D7H8, Q5D7I2, Q5D7I3, Q5D7I5, Q5D7J2, Q5M7Z0, Q5REL3

SIGNOR signaling

58 interactions.

AEffectBMechanism
CBLdown-regulatesINSRubiquitination
SH2B2up-regulatesCBLbinding
CBLdown-regulatesPIK3R1ubiquitination
CBLdown-regulatesPIK3R2ubiquitination
EGFRup-regulatesCBLrelocalization
GRB2up-regulatesCBLrelocalization
SH3GLB1up-regulatesCBLbinding
UBASH3Bdown-regulatesCBLbinding
CBLdown-regulatesLRIG1ubiquitination
LRIG1up-regulatesCBLbinding
ERBB4up-regulatesCBLbinding
ABI1up-regulatesCBLbinding
CBL“down-regulates quantity by destabilization”ABL1ubiquitination
CBL“down-regulates quantity by destabilization”METubiquitination
CBL“down-regulates quantity by destabilization”CFLARubiquitination
SH3KBP1up-regulatesCBLbinding
PTPRJ“down-regulates activity”CBL
PRKCA“down-regulates quantity”CBLphosphorylation
CBLdown-regulatesPI3Kubiquitination
CBL“down-regulates activity”KITubiquitination
Ub:E2“up-regulates activity”CBLubiquitination
CBL“down-regulates quantity by destabilization”PDGFRBpolyubiquitination
CBL“down-regulates quantity by destabilization”EPHA2binding
CBL“down-regulates quantity by destabilization”LCKpolyubiquitination
CBL“down-regulates activity”SYKubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 123 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
SARS-CoV-1 targets host intracellular signalling and regulatory pathways858.4×5e-11
Activation of BAD and translocation to mitochondria757.9×8e-10
Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex751.1×2e-09
Signaling by phosphorylated juxtamembrane, extracellular and kinase domain KIT mutants950.8×1e-11
Regulation of signaling by CBL948.6×1e-11
Signaling by ERBB2 ECD mutants643.8×1e-07
Activation of BH3-only proteins843.2×6e-10
Downstream signal transduction1041.4×7e-12

GO biological processes:

GO termPartnersFoldFDR
T cell differentiation621.3×6e-05
epidermal growth factor receptor signaling pathway920.6×2e-07
phosphatidylinositol 3-kinase/protein kinase B signal transduction1019.5×5e-08
peptidyl-tyrosine phosphorylation519.5×5e-04
ephrin receptor signaling pathway619.1×9e-05
ERK1 and ERK2 cascade617.7×1e-04
protein targeting517.0×8e-04
insulin receptor signaling pathway714.4×9e-05

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 3 cancer types — ALL, AML, ESCA.

Clinical variants and AI predictions

ClinVar

2431 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic12
Likely pathogenic14
Uncertain significance1419
Likely benign717
Benign96

Top pathogenic / likely-pathogenic (26)

Variant IDHGVSClassification
13809NM_005188.4(CBL):c.1168G>T (p.Asp390Tyr)Pathogenic
1712083NM_005188.4(CBL):c.1103_1108del (p.Tyr368_Glu369del)Pathogenic
180815NM_005188.4(CBL):c.1096-1G>TPathogenic
180826NM_005188.2:c.1227+2_1227+3delTACinsAAGPathogenic
29824NM_005188.4(CBL):c.1112A>G (p.Tyr371Cys)Pathogenic
3772040NM_005188.4(CBL):c.1221_1227+20delPathogenic
40401NM_005188.4(CBL):c.306T>G (p.Tyr102Ter)Pathogenic
40404NM_005188.4(CBL):c.1076_1087del (p.Asp359_Lys362del)Pathogenic
40405NM_005188.4(CBL):c.1199T>G (p.Met400Arg)Pathogenic
40407NM_005188.4(CBL):c.1227+2_1227+4delinsAAGPathogenic
652390NC_000011.9:g.(?118967698)(119170501_?)delPathogenic
689750NM_005188.4(CBL):c.1096-2A>TPathogenic
1053208NM_005188.4(CBL):c.1100A>G (p.Gln367Arg)Likely pathogenic
1334208NM_005188.4(CBL):c.1516C>T (p.Arg506Ter)Likely pathogenic
1334287NM_005188.4(CBL):c.1930G>T (p.Asp644Tyr)Likely pathogenic
1386412NM_005188.4(CBL):c.1259G>T (p.Arg420Leu)Likely pathogenic
1427090NM_005188.4(CBL):c.1112_1114del (p.Tyr371del)Likely pathogenic
1700195NM_005188.4(CBL):c.1007+2T>ALikely pathogenic
1794421NM_005188.4(CBL):c.1109_1111dup (p.Leu370_Tyr371insLeu)Likely pathogenic
2575960NM_005188.4(CBL):c.1178T>A (p.Ile393Asn)Likely pathogenic
2662914NM_005188.4(CBL):c.1142G>T (p.Cys381Phe)Likely pathogenic
3033769NM_005188.4(CBL):c.1096-6_1101delinsATTATGAATTTTTTTAAATLikely pathogenic
3252722NM_005188.4(CBL):c.1228-2A>CLikely pathogenic
4686183NM_005188.4(CBL):c.1237G>T (p.Gly413Cys)Likely pathogenic
4800612NM_005188.4(CBL):c.1192C>A (p.His398Asn)Likely pathogenic
949693NM_005188.4(CBL):c.1112A>T (p.Tyr371Phe)Likely pathogenic

SpliceAI

4821 predictions. Top by Δscore:

VariantEffectΔscore
11:119232555:A:Gdonor_gain1.0000
11:119232564:G:Tdonor_gain1.0000
11:119232583:GAAAA:Gdonor_gain1.0000
11:119232587:A:AGdonor_gain1.0000
11:119271718:ATTCT:Aacceptor_gain1.0000
11:119271732:TA:Tacceptor_loss1.0000
11:119271734:GGC:Gacceptor_gain1.0000
11:119271877:GAAAA:Gdonor_gain1.0000
11:119271878:AAAA:Adonor_gain1.0000
11:119271878:AAAAG:Adonor_loss1.0000
11:119271879:AAA:Adonor_gain1.0000
11:119271879:AAAGT:Adonor_loss1.0000
11:119271880:AA:Adonor_gain1.0000
11:119271880:AAG:Adonor_loss1.0000
11:119271881:AGTA:Adonor_loss1.0000
11:119271882:G:GGdonor_gain1.0000
11:119271882:GTA:Gdonor_loss1.0000
11:119271883:TAAGT:Tdonor_loss1.0000
11:119273866:A:AGacceptor_gain1.0000
11:119273867:G:GGacceptor_gain1.0000
11:119274020:TTCAG:Tdonor_loss1.0000
11:119274021:TCAGG:Tdonor_loss1.0000
11:119274023:AGGT:Adonor_loss1.0000
11:119274024:GG:Gdonor_loss1.0000
11:119274026:T:Adonor_loss1.0000
11:119274830:A:AGacceptor_gain1.0000
11:119274831:G:GGacceptor_gain1.0000
11:119274831:GCC:Gacceptor_gain1.0000
11:119274831:GCCC:Gacceptor_gain1.0000
11:119274831:GCCCT:Gacceptor_gain1.0000

AlphaMissense

5938 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:119206595:T:AW60R1.000
11:119206595:T:CW60R1.000
11:119206602:T:CL62P1.000
11:119206605:T:AM63K1.000
11:119206605:T:GM63R1.000
11:119206607:G:CD64H1.000
11:119206608:A:TD64V1.000
11:119232455:G:CR68P1.000
11:119232460:T:CC70R1.000
11:119232461:G:AC70Y1.000
11:119232461:G:TC70F1.000
11:119232462:T:GC70W1.000
11:119232476:T:CL75P1.000
11:119232482:T:AL77Q1.000
11:119232482:T:CL77P1.000
11:119232482:T:GL77R1.000
11:119232484:A:GK78E1.000
11:119232486:G:CK78N1.000
11:119232486:G:TK78N1.000
11:119232489:T:AN79K1.000
11:119232489:T:GN79K1.000
11:119232490:A:CS80R1.000
11:119232492:C:AS80R1.000
11:119232492:C:GS80R1.000
11:119232493:C:AP81T1.000
11:119232493:C:TP81S1.000
11:119232494:C:AP81Q1.000
11:119232494:C:GP81R1.000
11:119232496:C:AP82T1.000
11:119232496:C:TP82S1.000

dbSNP variants (sampled 300 via entrez): RS1000011748 (11:119287098 A>G), RS1000015438 (11:119274059 T>C,G), RS1000024416 (11:119235700 A>G), RS1000033026 (11:119233346 G>A), RS1000052239 (11:119264776 C>A,G), RS1000092699 (11:119204786 T>C), RS1000142047 (11:119272196 A>G), RS1000151745 (11:119218476 C>T), RS1000163906 (11:119226969 T>C), RS1000207407 (11:119271408 G>A), RS1000220016 (11:119267627 A>G), RS1000228108 (11:119226375 CTG>C), RS1000259142 (11:119226684 C>G,T), RS1000279809 (11:119281528 T>C), RS1000292120 (11:119215487 T>G)

Disease associations

OMIM: gene MIM:165360 | disease phenotypes: MIM:613563, MIM:607785, MIM:163950, MIM:617290, MIM:608093, MIM:614750

GenCC curated gene-disease

DiseaseClassificationInheritance
CBL-related disorderDefinitiveAutosomal dominant
juvenile myelomonocytic leukemiaStrongAutosomal dominant
Noonan syndromeSupportiveAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
CBL-related disorderDefinitiveAD

Mondo (17): RASopathy (MONDO:0021060), CBL-related disorder (MONDO:0013308), juvenile myelomonocytic leukemia (MONDO:0011908), Noonan syndrome and Noonan-related syndrome (MONDO:0020297), hereditary neoplastic syndrome (MONDO:0015356), Noonan syndrome (MONDO:0018997), rhabdomyosarcoma (MONDO:0005212), intellectual disability (MONDO:0001071), epilepsy, early-onset (MONDO:0957599), malignant germ cell tumor of ovary (MONDO:0018171), Noonan syndrome 1 (MONDO:0008104), neurodevelopmental disorder (MONDO:0700092), congenital heart disease (MONDO:0005453), B-lymphoblastic leukemia/lymphoma with hyperdiploidy (MONDO:0035943), DPAGT1-congenital disorder of glycosylation (MONDO:0011964)

Orphanet (13): RASopathy (Orphanet:536391), Noonan syndrome-like disorder with juvenile myelomonocytic leukemia (Orphanet:363972), Juvenile myelomonocytic leukemia (Orphanet:86834), Noonan syndrome and Noonan-related syndrome (Orphanet:98733), Inherited cancer-predisposing syndrome (Orphanet:140162), Noonan syndrome (Orphanet:648), Rhabdomyosarcoma (Orphanet:780), Malignant germ cell tumor of ovary (Orphanet:35807), B-lymphoblastic leukemia/lymphoma with hyperdiploidy (Orphanet:585936), Congenital myasthenic syndrome with glycosylation defect (Orphanet:353327), Congenital myasthenic syndrome (Orphanet:590), DPAGT1-CDG (Orphanet:86309), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

143 total (30 of 143 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000028Cryptorchidism
HP:0000044Hypogonadotropic hypogonadism
HP:0000078Abnormality of the genital system
HP:0000179Thick lower lip vermilion
HP:0000218High palate
HP:0000252Microcephaly
HP:0000278Retrognathia
HP:0000286Epicanthus
HP:0000316Hypertelorism
HP:0000325Triangular face
HP:0000337Broad forehead
HP:0000343Long philtrum
HP:0000347Micrognathia
HP:0000348High forehead
HP:0000358Posteriorly rotated ears
HP:0000369Low-set ears
HP:0000391Thickened helices
HP:0000396Overfolded helix
HP:0000400Macrotia
HP:0000407Sensorineural hearing impairment
HP:0000463Anteverted nares
HP:0000465Webbed neck
HP:0000470Short neck
HP:0000474Thickened nuchal skin fold
HP:0000476Cystic hygroma
HP:0000486Strabismus
HP:0000494Downslanted palpebral fissures
HP:0000508Ptosis
HP:0000520Proptosis

GWAS associations

22 associations (top):

StudyTraitp-value
GCST001337_33Platelet count8.000000e-11
GCST004603_68Platelet count3.000000e-43
GCST004603_69Platelet count5.000000e-11
GCST004607_35Plateletcrit5.000000e-52
GCST004607_36Plateletcrit3.000000e-32
GCST004611_185High light scatter reticulocyte count2.000000e-11
GCST004612_119High light scatter reticulocyte percentage of red cells4.000000e-10
GCST004619_164Reticulocyte fraction of red cells4.000000e-15
GCST004622_115Reticulocyte count5.000000e-17
GCST005991_26Platelet count4.000000e-34
GCST011345_18Triglyceride levels2.000000e-09
GCST012032_10Platelet count2.000000e-17
GCST90002385_216High light scatter reticulocyte count9.000000e-19
GCST90002386_364High light scatter reticulocyte percentage of red cells4.000000e-17
GCST90002392_362Mean corpuscular volume1.000000e-12
GCST90002397_406Mean spheric corpuscular volume1.000000e-17
GCST90002400_478Plateletcrit7.000000e-76
GCST90002400_479Plateletcrit6.000000e-55
GCST90002402_394Platelet count4.000000e-173
GCST90002402_395Platelet count2.000000e-46
GCST90002405_296Reticulocyte count2.000000e-24
GCST90002406_330Reticulocyte fraction of red cells4.000000e-22

EFO canonical traits (4, from GWAS)

EFO IDTrait name
EFO:0004309platelet count
EFO:0007985platelet crit
EFO:0007986reticulocyte count
EFO:0004530triglyceride measurement

MeSH disease descriptors (10)

DescriptorNameTree numbers
D006330Heart Defects, CongenitalC14.240.400; C14.280.400; C16.131.240.400
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D054429Leukemia, Myelomonocytic, JuvenileC04.557.337.539.525; C15.378.190.615.520; C15.378.508.539.525
D008831MicrocephalyC05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500
D009386Neoplastic Syndromes, HereditaryC04.700; C16.320.700
D065886Neurodevelopmental DisordersF03.625
D009634Noonan SyndromeC05.660.207.690; C14.240.400.787; C14.280.400.787; C16.131.240.400.784; C16.131.621.207.690; C17.300.690
D012208RhabdomyosarcomaC04.557.450.590.550.660; C04.557.450.795.550.660
C535748Congenital disorder of glycosylation type 1J (supp.)
C537846Noonan like syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL6066351 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

ChEMBL bioactivities

48 potent at pChembl≥5 of 50 total, top 48 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.70Ki0.2nMCHEMBL6134621
9.15Ki0.7nMCHEMBL6120549
9.05Ki0.9nMCHEMBL6102700
8.89Ki1.3nMCHEMBL6103468
8.64EC502.3nMCHEMBL6134621
8.51Ki3.1nMCHEMBL6147468
8.46Ki3.5nMCHEMBL6133335
8.40EC504nMCHEMBL6102700
8.30Ki5nMCHEMBL6133395
8.30Ki5nMCHEMBL6134158
8.24EC505.7nMCHEMBL6120549
8.18Ki6.6nMCHEMBL6141556
7.94Ki11.4nMCHEMBL6083093
7.85EC5014.2nMCHEMBL6103468
7.82Ki15nMCHEMBL6147378
7.73Ki18.5nMCHEMBL6103305
7.65EC5022.4nMCHEMBL6143001
7.59Ki25.7nMCHEMBL6078127
7.51EC5030.9nMCHEMBL6133395
7.50EC5031.9nMCHEMBL6147468
7.47EC5033.8nMCHEMBL6134158
7.43EC5037.2nMCHEMBL6133335
7.40IC5040nMCHEMBL5568675
7.40IC5040nMCHEMBL5591412
7.30IC5050nMCHEMBL5570218
7.30IC5050nMCHEMBL5565433
7.16EC5068.5nMCHEMBL6141556
7.10IC5080nMCHEMBL5593951
6.96EC50110.5nMCHEMBL6103305
6.80IC50160nMCHEMBL5549968
6.80EC50159.7nMCHEMBL6147378
6.75EC50177nMCHEMBL6083093
6.72IC50190nMCHEMBL5575731
6.70IC50200nMCHEMBL5571356
6.48IC50330nMCHEMBL5595595
6.48IC50330nMCHEMBL5571987
6.39IC50410nMCHEMBL5542469
6.34IC50460nMCHEMBL5573269
6.33EC50468.8nMCHEMBL6078127
6.24IC50580nMCHEMBL5574553
6.07IC50860nMCHEMBL5563999
6.06IC50880nMCHEMBL5592825
6.02IC50960nMCHEMBL5575462
5.87IC501340nMCHEMBL5569665
5.77IC501700nMCHEMBL5567426
5.66IC502200nMCHEMBL5570276
5.20IC506300nMCHEMBL5571500
5.18IC506550nMCHEMBL5571480

PubChem BioAssay actives

21 with measured affinity, of 24 total; 21 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(2S)-pent-3-yn-2-yl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.0400uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methyltriazol-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.0400uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1S)-1-(1-methylpyrazol-4-yl)ethyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.0500uM
(2S)-2-[3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-2-oxo-5-(trifluoromethyl)-1-pyridinyl]propanenitrile2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.0500uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1R)-1-(1-methylpyrazol-4-yl)ethyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.0800uM
1-but-2-ynyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.1600uM
1-[(1-methylimidazol-4-yl)methyl]-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.1900uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methylpyrazol-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.2000uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[[(3S)-1-methylpyrrolidin-3-yl]methyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.3300uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(5-methyl-1,3,4-oxadiazol-2-yl)methyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.3300uM
3-[3-[(R)-cyclobutyl-(4-methyl-1,2,4-triazol-3-yl)methyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.4100uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1-[(1-methylpiperidin-4-yl)methyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.4600uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.5800uM
1-methyl-5-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-3-(trifluoromethyl)-7H-pyrrolo[2,3-b]pyridin-6-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.8600uM
1-methyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.8800uM
3-[(4-methyl-1,2,4-triazol-3-yl)methyl]-3-[3-[2-oxo-5-(trifluoromethyl)-1H-pyridin-3-yl]phenyl]cyclobutane-1-carbonitrile2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic500.9600uM
5-cyclopropyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic501.3400uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethoxy)-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic501.7000uM
3-[3-[1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic502.2000uM
5-methyl-3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-1H-pyridin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic506.3000uM
3-[3-[3-methyl-1-(4-methyl-1,2,4-triazol-3-yl)cyclobutyl]phenyl]-5-(trifluoromethyl)-1H-pyrazin-2-one2098912: Inhibition of cCbl (unknown origin) by TR-FRET assayic506.5500uM

CTD chemical–gene interactions

57 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
methylmercuric chlorideincreases expression, affects cotreatment3
Benzo(a)pyreneincreases expression3
Acetaminophenincreases expression2
Dronabinoldecreases expression, increases expression, affects reaction2
FR900359decreases phosphorylation1
TAK-243decreases sumoylation1
dicrotophosincreases expression1
geldanamycinincreases expression1
alpha-pineneaffects cotreatment, decreases expression, increases abundance1
bisphenol Aincreases expression1
arseniteaffects binding, decreases reaction1
sodium arseniteincreases expression1
saikosaponin Dincreases expression1
methacrylaldehydeaffects cotreatment, decreases expression, increases abundance1
beta-methylcholineaffects expression1
4-((3-bromophenyl)amino)-6,7-dimethoxyquinazolinedecreases reaction, increases phosphorylation1
CGP 52608affects binding, increases reaction1
K 7174increases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideincreases expression, affects cotreatment1
torcetrapibincreases expression1
dorsomorphinaffects cotreatment, increases expression1
tetraarsenic tetrasulfideaffects cotreatment, increases expression1
Imatinib Mesylateaffects cotreatment, increases expression1
Bortezomibdecreases activity, increases activity, increases reaction1
Resveratroldecreases expression1
Arsenic Trioxideincreases reaction, increases expression, decreases activity, increases activity1
Vorinostatdecreases expression1
Acroleinaffects cotreatment, decreases expression, increases abundance1
Air Pollutantsaffects cotreatment, decreases expression, increases abundance1
Vehicle Emissionsdecreases expression1

ChEMBL screening assays

4 unique, capped per target: 2 binding, 2 toxicity

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5540670BindingInhibition of cCbl (unknown origin) by TR-FRET assayDiscovery, Optimization, and Biological Evaluation of Arylpyridones as Cbl-b Inhibitors. — J Med Chem
CHEMBL6077616ToxicityDisplacement of fluorescent tracer from C-CBL (46 to 435 residues) (unknown origin) preincubated for 15 mins followed by fluorescent tracer addition and measured after 1 hr by HTRF methodPotential Therapeutic Benefit of the Selective Inhibitors of Casitas B Cell Lymphoma-b (CBL-B) in Cancer Immunotherapy. — ACS Med Chem Lett

Cellosaurus cell lines

9 cell lines: 7 cancer cell line, 1 transformed cell line, 1 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B2TJAbcam HEK293T CBL KOTransformed cell lineFemale
CVCL_B8CHAbcam HCT 116 CBL KOCancer cell lineMale
CVCL_B8TCAbcam MCF-7 CBL KOCancer cell lineFemale
CVCL_B9ENAbcam A-549 CBL KOCancer cell lineMale
CVCL_D5KTNPC268Cancer cell lineFemale
CVCL_D7LUUbigene A-549 CBL KOCancer cell lineMale
CVCL_SH05HAP1 CBL (-) 1Cancer cell lineMale
CVCL_VN17CHOPi001-AInduced pluripotent stem cellFemale
CVCL_XM45HAP1 CBL (-) 2Cancer cell lineMale

Clinical trials (associated diseases)

307 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT01339988PHASE4UNKNOWNBusulfan and Cyclophosphamide Instead of Total Boby Irradiation (TBI) and Cyclophosphamide for Hematological Malignancies Hematocrit (HCT)
NCT00002798PHASE3COMPLETEDCombination Chemotherapy With or Without Bone Marrow Transplantation in Treating Children With Acute Myelogenous Leukemia or Myelodysplastic Syndrome
NCT00152139PHASE3COMPLETEDStem Cell Transplantation for Patients With Hematologic Malignancies
NCT00186823PHASE3COMPLETEDHaploidentical Stem Cell Transplantation for Patients With Hematologic Malignancies
NCT00450450PHASE3COMPLETEDDonor Bone Marrow Transplant With or Without G-CSF in Treating Young Patients With Hematologic Cancer or Other Diseases
NCT00799461PHASE3COMPLETEDInternet-Based Program With or Without Telephone-Based Problem-Solving Training in Helping Long-Term Survivors of Hematopoietic Stem Cell Transplant Cope With Late Complications
NCT00843882PHASE3ACTIVE_NOT_RECRUITINGLenalidomide With or Without Epoetin Alfa in Treating Patients With Myelodysplastic Syndrome and Anemia
NCT01241500PHASE3COMPLETEDRandomized Study of ON 01910.Na in Refractory Myelodysplastic Syndrome Patients With Excess Blasts
NCT01305200PHASE3COMPLETEDSupersaturated Calcium Phosphate Rinse in Preventing Oral Mucositis in Young Patients Undergoing Autologous or Donor Stem Cell Transplant
NCT01749111PHASE3TERMINATEDComparison Between Cyclophosphamide and Combination of Methotrexate + Calcineurin Inhibitor for GVHD Prophylaxis
NCT01928537PHASE3COMPLETEDEfficacy and Safety of IV Rigosertib in MDS Patients With Excess Blasts Progressing After Azacitidine or Decitabine
NCT03306264PHASE3COMPLETEDStudy of ASTX727 vs IV Decitabine in Participants With MDS, CMML, and AML
NCT04842604PHASE3COMPLETEDContinuation Study of B1371019(NCT03416179) and B1371012(NCT02367456) Evaluating Azacitidine With Or Without Glasdegib In Patients With Previously Untreated AML, MDS or CMML
NCT05515029PHASE3ACTIVE_NOT_RECRUITINGPreventing of GVHD With Post-transplantation Cyclophosphamide, Abatacept, Vedolizumab and Calcineurin Inhibitor at Patients With Hemoblastosis
NCT06647862PHASE3RECRUITINGIMM01+Azacitidine VS Placebo +Azacitidine in Patients With Newly Diagnosed Chronic Myelomonocytic Leukemia (CMML1-2)
NCT00452725PHASE3COMPLETEDEffect of MAXOMAT ® on the Growth of Small Children to NOONAN’s Syndrome
NCT01529840PHASE3COMPLETEDSomatropin Effect on Linear Growth and Final Height in Subjects With Noonan Syndrome
NCT01529944PHASE3COMPLETEDGenetic Testing of Noonan Subjects Previously Treated With Norditropin®. An Extension to Trial GHNOO-1658
NCT01927861PHASE3COMPLETEDInvestigating the Long-term Efficacy and Safety of Two Doses of NN-220 (Somatropin) in Short Stature Due to Noonan Syndrome
NCT02713945PHASE3COMPLETEDTreatment With HMG-COA Reductase Inhibitor of Growth and Bone Abnormalities in Children With Noonan Syndrome
NCT05723835PHASE3ACTIVE_NOT_RECRUITINGA Research Study Looking at How Safe Somapacitan is and How Well it Works in Children Who Need Help to Grow - REAL 9
NCT00015990PHASE2COMPLETEDThalidomide in Treating Patients With Myelodysplastic Syndrome
NCT00025038PHASE2COMPLETEDCombination Chemotherapy Followed By Donor Bone Marrow or Umbilical Cord Blood Transplant in Treating Children With Newly Diagnosed Juvenile Myelomonocytic Leukemia
NCT00039416PHASE2COMPLETEDImatinib Mesylate in Treating Patients With Myelofibrosis
NCT00067808PHASE2COMPLETEDStudy of Three Different Schedules of Low-Dose Decitabine in Myelodysplastic Syndrome (MDS)
NCT00079313PHASE2COMPLETEDImatinib (Gleevec(Registered Trademark)) to Treat Chronic Myelomonocytic Leukemia and Atypical Chronic Myelogenous Leukemia
NCT00084916PHASE2COMPLETEDCCI-779 in Treating Patients With Relapsed or Refractory Acute Myeloid Leukemia, Acute Lymphoblastic Leukemia, Myelodysplastic Syndromes, or Chronic Myelogenous Leukemia in Blastic Phase
NCT00113321PHASE2TERMINATEDLow-Dose Decitabine in Myelodysplastic Syndrome Post Azacytidine Failure
NCT00118352PHASE2COMPLETEDAlemtuzumab, Fludarabine Phosphate, and Total-Body Irradiation Followed by Cyclosporine and Mycophenolate Mofetil in Treating Patients Who Are Undergoing Donor Stem Cell Transplant for Hematologic Cancer
NCT00119366PHASE2TERMINATEDIodine I 131 Monoclonal Antibody BC8, Fludarabine Phosphate, Total Body Irradiation, and Donor Stem Cell Transplant Followed by Cyclosporine and Mycophenolate Mofetil in Treating Patients With Advanced Acute Myeloid Leukemia or Myelodysplastic Syndrome
NCT00136409PHASE2COMPLETEDA Study of Gleevec in Patients With Idiopathic Myelofibrosis or Chronic Myelomonocytic Leukemia (CMML)
NCT00143559PHASE2COMPLETEDStem Cell Transplantation as Immunotherapy for Hematologic Malignancies
NCT00145613PHASE2COMPLETEDHaploidentical Stem Cell Transplant for Treatment Refractory Hematological Malignancies
NCT00171912PHASE2COMPLETEDImatinib Mesylate in Patients With Various Types of Malignancies Involving Activated Tyrosine Kinase Enzymes
NCT00299156PHASE2COMPLETEDOral Clofarabine Study in Patients With Myelodysplastic Syndrome
NCT00309907PHASE2COMPLETEDEtanercept in Treating Young Patients With Idiopathic Pneumonia Syndrome After Undergoing a Donor Stem Cell Transplant
NCT00313586PHASE2COMPLETEDAzacitidine With or Without Entinostat in Treating Patients With Myelodysplastic Syndromes, Chronic Myelomonocytic Leukemia, or Acute Myeloid Leukemia
NCT00381550PHASE2COMPLETED3-AP and Fludarabine in Treating Patients With Myeloproliferative Disorders, Chronic Myelomonocytic Leukemia, or Accelerated Phase or Blastic Phase Chronic Myelogenous Leukemia
NCT00387426PHASE2TERMINATEDSunitinib in Treating Patients With Idiopathic Myelofibrosis
NCT00397813PHASE2COMPLETEDFludarabine Phosphate and Total Body Irradiation Followed by a Donor Peripheral Stem Cell Transplant in Treating Patients With Myelodysplastic Syndromes or Myeloproliferative Disorders