CBR1
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Also known as SDR21C1
Summary
CBR1 (carbonyl reductase 1, HGNC:1548) is a protein-coding gene on chromosome 21q22.12, encoding Carbonyl reductase [NADPH] 1 (P16152). NADPH-dependent reductase with broad substrate specificity.
The protein encoded by this gene belongs to the short-chain dehydrogenases/reductases (SDR) family, which function as NADPH-dependent oxidoreductases having wide specificity for carbonyl compounds, such as quinones, prostaglandins, and various xenobiotics. Alternatively spliced transcript variants have been found for this gene.
Source: NCBI Gene 873 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 67 total — 2 pathogenic
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001757
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1548 |
| Approved symbol | CBR1 |
| Name | carbonyl reductase 1 |
| Location | 21q22.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SDR21C1 |
| Ensembl gene | ENSG00000159228 |
| Ensembl biotype | protein_coding |
| OMIM | 114830 |
| Entrez | 873 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000290349, ENST00000399191, ENST00000439427, ENST00000466328, ENST00000530908
RefSeq mRNA: 2 — MANE Select: NM_001757
NM_001286789, NM_001757
CCDS: CCDS13641, CCDS68202
Canonical transcript exons
ENST00000290349 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001044162 | 36072446 | 36073164 |
| ENSE00003643969 | 36070950 | 36071057 |
| ENSE00003846386 | 36070024 | 36070404 |
Expression profiles
Bgee: expression breadth ubiquitous, 281 present calls, max score 99.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 86.3618 / max 1274.4562, expressed in 1759 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 188976 | 86.3618 | 1759 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 99.23 | gold quality |
| duodenum | UBERON:0002114 | 98.71 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.70 | gold quality |
| corpus callosum | UBERON:0002336 | 98.46 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.01 | gold quality |
| spinal cord | UBERON:0002240 | 97.97 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.73 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.58 | gold quality |
| caudate nucleus | UBERON:0001873 | 97.56 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.54 | gold quality |
| putamen | UBERON:0001874 | 97.52 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 97.26 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 97.22 | gold quality |
| amygdala | UBERON:0001876 | 97.20 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.12 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.08 | gold quality |
| metanephros cortex | UBERON:0010533 | 97.00 | gold quality |
| nucleus accumbens | UBERON:0001882 | 96.96 | gold quality |
| skin of leg | UBERON:0001511 | 96.89 | gold quality |
| small intestine | UBERON:0002108 | 96.89 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.83 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.83 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.62 | gold quality |
| substantia nigra | UBERON:0002038 | 96.54 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.49 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 96.48 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.38 | gold quality |
| body of stomach | UBERON:0001161 | 96.38 | gold quality |
| stromal cell of endometrium | CL:0002255 | 96.35 | gold quality |
| midbrain | UBERON:0001891 | 96.26 | gold quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 902.53 |
| E-GEOD-81383 | yes | 465.01 |
| E-CURD-114 | yes | 70.59 |
| E-HCAD-11 | yes | 23.38 |
| E-HCAD-1 | yes | 20.82 |
| E-GEOD-84465 | yes | 12.85 |
| E-MTAB-6524 | no | 269.97 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, NFE2L2
miRNA regulators (miRDB)
76 targeting CBR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-6762-3P | 99.66 | 66.94 | 1188 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-5007-3P | 99.51 | 68.14 | 1242 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
| HSA-MIR-548B-3P | 99.38 | 67.26 | 1000 |
| HSA-MIR-1206 | 99.30 | 69.32 | 1016 |
| HSA-MIR-7158-5P | 99.25 | 67.95 | 796 |
| HSA-MIR-146A-3P | 99.13 | 68.99 | 1881 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-1909-5P | 98.94 | 64.01 | 484 |
Literature-anchored findings (GeneRIF, showing 38)
- the functional genetic determinant of CBR1 activity toward relevant physiological and pharmacological substrates (PMID:17344335)
- The functional characterization of the promoter of CBR1 is reported. (PMID:17569794)
- Carbonyl reductase-1 (CBR1), microsomal prostaglandin E synthase-1 and 2 (mPGES-1, mPGES-2), cytosolic prostaglandin E synthase (cPGES), aldoketoreductase (AKR1C1) and prostaglandin F synthase (AKR1C3) were all expressed in hair follicles. (PMID:17697149)
- These results suggested that hCBR3 and hCBR1 play distinct physiological roles. (PMID:18493841)
- Human carbonyl reductase 1 is an S-nitrosoglutathione reductase (PMID:18826943)
- CBR1 polymorphisms have a significant influence on the pharmacokinetics of doxorubicin in Asian breast cancer patients. (PMID:19016765)
- the nonsynonymous single nucleotide polymorphisms generating mutations OF CBR1 may alter bioavailability of anthracyclines in cancer patients (PMID:19204081)
- analysis of the structural basis for substrate specificity in human monomeric carbonyl reductases CBR1 (PMID:19841672)
- This protein has been found differentially expressed in thalami from patients with schizophrenia. (PMID:20471030)
- a physiological role of CBR1, but not for CBR3, in S-nitrosoglutathione reduction and thus ultimately in regulation of NO signaling (PMID:21256830)
- Polymorphisms in CBR1 gene did not increase risk of cardiomyopathy after anthracycline treatment of childhood cancers. (PMID:22124095)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- CBR1 regulates cancer cell invasion in endometrial adenocarcinomas by regulating the epithelial mesenchymal transition (PMID:22542806)
- This pilot study suggests that CBR1 RNA expression may be helpful in identifying AML patients at risk of developing resistance or toxicity to daunorubicin due to increased formation of daunorubicinol. (PMID:22562609)
- regulation of human CBR1 expression by hsa-miR-574-5p and hsa-miR-921 depends upon rs9024 genotype status (PMID:23133646)
- Nrf2 is a novel transcriptional regulator of CBR1 genes in humans. (PMID:23247010)
- GSNO-induced covalent modification of cysteine residues affects the kinetic mechanism of CBR1. (PMID:23295225)
- we suggest that PEP-1-CBR1 protein may be a therapeutic agent for the treatment of ischemic injuries as well as oxidative-stress-induced cell damage and death. (PMID:24440593)
- The stimulatory effect of cortisol on CBR1 expression may partly explain the concurrent increases of cortisol and prostaglandin PGF2alpha in human amnion tissue prior to the onset of labor (PMID:24654784)
- Protein products of AKR1C1, AKR1C2, AKR7A3, CYP3A4, and carbonyl reductase (CBR1) were found in tumors and those of AKR1C1, AKR7A3, and CBR1 correlated with their transcript levels. (PMID:25526449)
- Inhibition of CBR1 may increase the efficacy of daunorubicin in cancer tissue. (PMID:25541467)
- CBR1 decreases promoted tumor proliferation and growth as well as invasion and metastasis; CBR1 has potential to become a new candidate for molecular targeting therapy. (PMID:25572536)
- Results demonstrate a trend toward decreased functional expression of selective hepatic reductases in ESRD livers. (PMID:26282591)
- Up-Regulation of Carbonyl Reductase 1 Renders Development of Doxorubicin Resistance in Human Gastrointestinal Cancers (PMID:26328486)
- Critical insights into the substrate selectivity of hCBR1 and the interaction between hCBR1 and glutathione. (PMID:26381805)
- These results suggest that CR1 induces apoptosis by activating the caspase pathway via binding to TNFR1. (PMID:26499922)
- AKR1C3 is the primary enzyme and CBR1 is a minor enzyme responsible for warfarin reduction in human liver cytosol. (PMID:27055738)
- CBR1 is an efficient catalyst for the reduction of glutathionylated aldehydes derived from lipid peroxidation. (PMID:27562619)
- The ability of human carbonyl reductase 1 to efficiently catalyze the reduction of glutathionylated aldehydes derived from lipid peroxidation, that in the case of glutathionylated-4-hydroxyalkanals is associated to the ability to oxidize the hemiacetal hydroxyl group (PMID:28274719)
- Data suggest that fatty acids and acyl-CoAs bind competitively with respect to substrate binding to carbonyl reductase 1 (CBR1), an enzyme involved in first-pass drug metabolism in intestinal mucosa; inhibition of CBR1 by these products of digestion may lead to food-drug interactions. (PMID:28450226)
- These findings suggest that CBR1 generating 20beta-dihydrocortisol is a novel pathway modulating GR activation and providing enzymatic protection against excessive GR activation in obesity. (PMID:28878267)
- This study examined the impact of the functional single nucleotide polymorphism CBR1 rs9024 on the bioactivation of loxoprofen in a collection of human liver samples and tumor cell lines. (PMID:29851133)
- Findings suggest that CBR1 has an important role in DNA damage response through regulation of irradiation-mediated ROS generation causing to regulation of radiosensitivity, and CBR1 inhibition with IR might be a potent therapeutic strategy for head and neck squamous cell carcinoma treatment. (PMID:30376862)
- Dehydrogenase/reductase activity of human carbonyl reductase 1 with NADP(H) acting as a prosthetic group. (PMID:31759632)
- Transcription of carbonyl reductase 1 is regulated by DNA topoisomerase II beta. (PMID:32767399)
- Carbonyl Reductase 1 Attenuates Ischemic Brain Injury by Reducing Oxidative Stress and Neuroinflammation. (PMID:33964000)
- LncRNA MYMLR promotes pituitary adenoma development by upregulating carbonyl reductase 1 via sponging miR-197-3p. (PMID:36206098)
- [Altered expression of 15-hydroxyprostaglandin dehydrogenase in chronic rhinosinusitis with nasal polyps]. (PMID:37905483)
Cross-species orthologs
17 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cbr1 | ENSDARG00000036587 |
| mus_musculus | Cbr1 | ENSMUSG00000051483 |
| mus_musculus | Cbr1b | ENSMUSG00000082815 |
| rattus_norvegicus | Cbr1l3 | ENSRNOG00000049693 |
| rattus_norvegicus | ENSRNOG00000073936 | |
| drosophila_melanogaster | CG7601 | FBGN0027583 |
| drosophila_melanogaster | CG31546 | FBGN0051546 |
| drosophila_melanogaster | CG31548 | FBGN0051548 |
| caenorhabditis_elegans | WBGENE00000970 | |
| caenorhabditis_elegans | WBGENE00000975 | |
| caenorhabditis_elegans | WBGENE00000981 | |
| caenorhabditis_elegans | WBGENE00000993 | |
| caenorhabditis_elegans | WBGENE00008985 | |
| caenorhabditis_elegans | WBGENE00008986 | |
| caenorhabditis_elegans | WBGENE00011424 | |
| caenorhabditis_elegans | WBGENE00022809 | |
| caenorhabditis_elegans | WBGENE00219274 |
Paralogs (13): RDH8 (ENSG00000080511), DHRS7 (ENSG00000100612), DHRS2 (ENSG00000100867), DHRS7B (ENSG00000109016), HSD11B1 (ENSG00000117594), HSDL2 (ENSG00000119471), DHRS4 (ENSG00000157326), DHRS1 (ENSG00000157379), CBR3 (ENSG00000159231), HSD11B1L (ENSG00000167733), DHRS7C (ENSG00000184544), DHRS4L2 (ENSG00000187630), DHRS11 (ENSG00000278535)
Protein
Protein identifiers
Carbonyl reductase [NADPH] 1 — P16152 (reviewed: P16152)
Alternative names: 15-hydroxyprostaglandin dehydrogenase [NADP(+)], 20-beta-hydroxysteroid dehydrogenase, Alcohol dehydrogenase [NAD(P)+] CBR1, NADPH-dependent carbonyl reductase 1, Prostaglandin 9-ketoreductase, Prostaglandin-E(2) 9-reductase, Short chain dehydrogenase/reductase family 21C member 1
All UniProt accessions (4): A0A384NL53, A8MTM1, P16152, E9PQ63
UniProt curated annotations — full annotation on UniProt →
Function. NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. In addition, participates in the glucocorticoid metabolism by catalyzing the NADPH-dependent cortisol/corticosterone into 20beta-dihydrocortisol (20b-DHF) or 20beta-corticosterone (20b-DHB), which are weak agonists of NR3C1 and NR3C2 in adipose tissue.
Subunit / interactions. Monomer.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in kidney (at protein level).
Activity regulation. Inhibited by quercetin, rutenin and its derivatives.
Similarity. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P16152-1 | 1 | yes |
| P16152-2 | 2 |
RefSeq proteins (2): NP_001273718, NP_001748* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002347 | SDR_fam | Family |
| IPR020904 | Sc_DH/Rdtase_CS | Conserved_site |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
| IPR045313 | CBR1-like | Family |
Pfam: PF00106
Enzyme classification (BRENDA):
- EC 1.1.1.184 — carbonyl reductase (NADPH) (BRENDA: 40 organisms, 630 substrates, 214 inhibitors, 373 Km, 209 kcat entries)
Substrate kinetics (BRENDA)
114 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| MENADIONE | — | 31 |
| NADPH | 0.0021–10.27 | 26 |
| 2-HYDROXYACETOPHENONE | 0.59–10.27 | 24 |
| 4-BENZOYLPYRIDINE | — | 19 |
| ISATIN | 0.0008–4 | 19 |
| 9,10-PHENANTHRENEQUINONE | 0.002–0.078 | 17 |
| DAUNORUBICIN | 0.043–3 | 13 |
| DOXORUBICIN | 0.041–0.335 | 13 |
| 4-NITROBENZALDEHYDE | 0.12–1.1 | 9 |
| NADH | 0.062–8.67 | 9 |
| 1,4-NAPHTHOQUINONE | 0.0073–0.54 | 6 |
| PROSTAGLANDIN E2 | 0.03–0.32 | 6 |
| 2,3-HEXANEDIONE | 0.06–0.62 | 5 |
| ETHYL 4-CHLORO-3-OXOBUTANOATE | 0.0026–4.6 | 5 |
| S-NITROSOGLUTATHIONE | 0.028–2.93 | 5 |
Catalyzed reactions (Rhea), 12 shown:
- prostaglandin E1 + NADP(+) = 15-oxoprostaglandin E1 + NADPH + H(+) (RHEA:11636)
- a primary alcohol + NADP(+) = an aldehyde + NADPH + H(+) (RHEA:15937)
- a secondary alcohol + NADP(+) = a ketone + NADPH + H(+) (RHEA:19257)
- prostaglandin D2 + NADP(+) = 15-oxoprostaglandin D2 + NADPH + H(+) (RHEA:20744)
- prostaglandin F2alpha + NADP(+) = prostaglandin E2 + NADPH + H(+) (RHEA:24508)
- prostaglandin E2 + NADP(+) = 15-oxoprostaglandin E2 + NADPH + H(+) (RHEA:63476)
- prostaglandin F2alpha + NADP(+) = 15-oxoprostaglandin F2alpha + NADPH + H(+) (RHEA:63480)
- menadione + NADPH + H(+) = menadiol + NADP(+) (RHEA:63492)
- S-nitrosoglutathione + NADPH + H(+) = S-(hydroxysulfenamide)glutathione + NADP(+) (RHEA:63500)
- daunorubicin + NADPH + H(+) = 13-dihydrodaunorubicin + NADP(+) (RHEA:63504)
- cortisol + NADPH + H(+) = 20beta-dihydrocortisol + NADP(+) (RHEA:70215)
- corticosterone + NADPH + H(+) = 20beta-dihydrocorticosterone + NADP(+) (RHEA:70219)
UniProt features (42 total): helix 12, binding site 9, strand 8, modified residue 4, splice variant 2, sequence variant 2, turn 2, initiator methionine 1, chain 1, active site 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1WMA | X-RAY DIFFRACTION | 1.24 |
| 2PFG | X-RAY DIFFRACTION | 1.54 |
| 3BHJ | X-RAY DIFFRACTION | 1.77 |
| 3BHM | X-RAY DIFFRACTION | 1.8 |
| 4Z3D | X-RAY DIFFRACTION | 1.8 |
| 3BHI | X-RAY DIFFRACTION | 2.27 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P16152-F1 | 97.88 | 0.99 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 194 (proton acceptor)
Ligand- & substrate-binding residues (9): 194–198; 231–233; 10–34; 63–64; 90; 95–97; 106; 140; 193–194
Post-translational modifications (4): 2, 2, 30, 239
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-2162123 | Synthesis of Prostaglandins (PG) and Thromboxanes (TX) |
| R-HSA-1430728 | Metabolism |
| R-HSA-2142753 | Arachidonate metabolism |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-8978868 | Fatty acid metabolism |
MSigDB gene sets: 241 (showing top):
MODULE_93, GOBP_EPITHELIUM_DEVELOPMENT, JI_RESPONSE_TO_FSH_UP, GOBP_GLUCOCORTICOID_METABOLIC_PROCESS, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_KETONE_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, MODULE_66, SMITH_TERT_TARGETS_DN, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, MODULE_120, ONKEN_UVEAL_MELANOMA_UP, HOSHIDA_LIVER_CANCER_SUBCLASS_S3, GOBP_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS
GO Biological Process (7): xenobiotic metabolic process (GO:0006805), glucocorticoid metabolic process (GO:0008211), epithelial cell differentiation (GO:0030855), vitamin K metabolic process (GO:0042373), prostanoid biosynthetic process (GO:0046457), positive regulation of reactive oxygen species metabolic process (GO:2000379), lipid metabolic process (GO:0006629)
GO Molecular Function (10): carbonyl reductase (NADPH) activity (GO:0004090), oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655), 15-hydroxyprostaglandin-D dehydrogenase (NADP+) activity (GO:0047020), 15-hydroxyprostaglandin dehydrogenase (NADP+) activity (GO:0047021), prostaglandin E2 9-reductase activity (GO:0050221), S-nitrosoglutathione reductase (NADPH) activity (GO:0160163), protein binding (GO:0005515), alcohol dehydrogenase (NADP+) activity (GO:0008106), oxidoreductase activity (GO:0016491)
GO Cellular Component (4): cytosol (GO:0005829), extracellular exosome (GO:0070062), extracellular vesicle (GO:1903561), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Arachidonate metabolism | 1 |
| Fatty acid metabolism | 1 |
| Metabolism | 1 |
| Metabolism of lipids | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 4 |
| cellular anatomical structure | 2 |
| metabolic process | 1 |
| cellular response to xenobiotic stimulus | 1 |
| steroid metabolic process | 1 |
| cell differentiation | 1 |
| epithelium development | 1 |
| ketone metabolic process | 1 |
| unsaturated fatty acid biosynthetic process | 1 |
| prostanoid metabolic process | 1 |
| icosanoid biosynthetic process | 1 |
| positive regulation of metabolic process | 1 |
| reactive oxygen species metabolic process | 1 |
| regulation of reactive oxygen species metabolic process | 1 |
| primary metabolic process | 1 |
| alcohol dehydrogenase (NADP+) activity | 1 |
| oxidoreductase activity, acting on CH-OH group of donors | 1 |
| oxidoreductase activity, acting on NAD(P)H | 1 |
| binding | 1 |
| alcohol dehydrogenase [NAD(P)+] activity | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| extracellular vesicle | 1 |
| extracellular region | 1 |
| vesicle | 1 |
| extracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
3647 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CBR1 | AKR1B1 | P15121 | 906 |
| CBR1 | AKR1A1 | P14550 | 893 |
| CBR1 | DHFR2 | Q86XF0 | 802 |
| CBR1 | MCEE | Q96PE7 | 766 |
| CBR1 | SPR | P35270 | 744 |
| CBR1 | DHFR | P00374 | 732 |
| CBR1 | AKR1C3 | P42330 | 673 |
| CBR1 | AKR1C1 | P52896 | 604 |
| CBR1 | CNR1 | P21554 | 591 |
| CBR1 | CBR4 | Q8N4T8 | 546 |
| CBR1 | AKR7A2 | O43488 | 543 |
| CBR1 | AKR1B10 | O60218 | 541 |
| CBR1 | PTGS2 | P35354 | 540 |
| CBR1 | AKR1C2 | P52895 | 523 |
| CBR1 | AKR1C4 | P17516 | 522 |
IntAct
120 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CBR3 | CBR1 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CBR3 | CBR1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| CFTR | HAX1 | psi-mi:“MI:0914”(association) | 0.610 |
| EGFR | CBR1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| SSBP2 | CLEC18A | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| TSC22D1 | KRT1 | psi-mi:“MI:0914”(association) | 0.460 |
| CBR1 | GAPDHS | psi-mi:“MI:0915”(physical association) | 0.400 |
| CBR1 | AGTR1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CBR1 | HTR2B | psi-mi:“MI:0915”(physical association) | 0.370 |
| ERBB2 | CBR1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| OTUB1 | psi-mi:“MI:0914”(association) | 0.350 | |
| OTUB1 | EPM2A | psi-mi:“MI:0914”(association) | 0.350 |
| CBR3 | LDLR | psi-mi:“MI:0914”(association) | 0.350 |
| CBR1 | DENND3 | psi-mi:“MI:0914”(association) | 0.350 |
| JUN | TPM3 | psi-mi:“MI:0914”(association) | 0.350 |
| LACC1 | FLJ10842 | psi-mi:“MI:0914”(association) | 0.350 |
| URM1 | ELP1 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL1 | LGALS8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (175): CBR1 (Affinity Capture-RNA), CBR1 (Affinity Capture-MS), CBR1 (Co-fractionation), CBR1 (Co-fractionation), RBM12 (Co-fractionation), CBR1 (Affinity Capture-MS), CBR1 (Affinity Capture-MS), MYH1 (Affinity Capture-MS), ICAM5 (Affinity Capture-MS), APBA3 (Affinity Capture-MS), ZNF518A (Affinity Capture-MS), TXNL4A (Affinity Capture-MS), SEC61B (Affinity Capture-MS), DENND3 (Affinity Capture-MS), NCBP2 (Affinity Capture-MS)
ESM2 similar proteins: B2GV54, D3K5L7, E2R222, O60656, O95803, P16152, P52848, Q08DW9, Q0VCJ8, Q0VD27, Q15645, Q1JQE6, Q2HJ19, Q3U129, Q3UA06, Q3UHN9, Q4R766, Q5E9T4, Q5R8Y5, Q5RCU5, Q5XHZ9, Q5XIJ5, Q5ZIN0, Q5ZMH6, Q67FW5, Q6AYT7, Q6DD70, Q6GL10, Q6GV29, Q6PIU2, Q8BGB7, Q8BK26, Q8BLF1, Q8BWB6, Q8MI29, Q8N2K0, Q8NFT2, Q8VDI9, Q99JW1, Q99LR1
Diamond homologs: A0A017SEY2, A0A023I4F1, A0A078IS66, A0A078ISJ6, A0A0U1LQE2, A0A0U5CNP2, A0A1B7YCL6, A0A1V0QS34, A0A1V6PAN1, A0A223HDI5, A0A2H3CNT9, A0A2H3D905, A0A443HJZ3, A0A482ND39, A0A823A767, A0PJE2, A2RVM0, A6QP05, B2X050, B6H062, B8A5W4, C8VI80, D7UTD0, G1XTZ5, I1RL15, O32291, O74959, P0DXW2, P16152, P19871, P21218, P35320, P40747, P47727, P50163, P51657, P59837, Q01289, Q03326, Q08651
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 139 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| negative regulation of gene expression | 10 | 5.4× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
67 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 52 |
| Likely benign | 3 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3248151 | NC_000021.8:g.(?36164432)(37834775_?)del | Pathogenic |
| 812918 | NC_000021.8:g.36323351_37470324del | Pathogenic |
SpliceAI
439 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:36070352:G:GT | donor_gain | 1.0000 |
| 21:36070352:GGA:G | donor_gain | 1.0000 |
| 21:36070353:G:GT | donor_gain | 1.0000 |
| 21:36070355:G:GG | donor_gain | 1.0000 |
| 21:36070368:G:GT | donor_gain | 1.0000 |
| 21:36070403:GG:G | donor_gain | 1.0000 |
| 21:36070404:GGTA:G | donor_gain | 1.0000 |
| 21:36070945:A:AG | acceptor_gain | 1.0000 |
| 21:36070946:A:G | acceptor_gain | 1.0000 |
| 21:36070946:AAAGT:A | acceptor_loss | 1.0000 |
| 21:36070947:AAGTT:A | acceptor_gain | 1.0000 |
| 21:36070948:A:AG | acceptor_gain | 1.0000 |
| 21:36070948:AGT:A | acceptor_loss | 1.0000 |
| 21:36070949:G:GG | acceptor_gain | 1.0000 |
| 21:36070949:G:GT | acceptor_loss | 1.0000 |
| 21:36070949:GTT:G | acceptor_gain | 1.0000 |
| 21:36071054:CAAGG:C | donor_loss | 1.0000 |
| 21:36071055:AAGGT:A | donor_loss | 1.0000 |
| 21:36071056:AGGTG:A | donor_loss | 1.0000 |
| 21:36071058:G:GC | donor_loss | 1.0000 |
| 21:36071059:T:A | donor_loss | 1.0000 |
| 21:36070353:GA:G | donor_gain | 0.9900 |
| 21:36070402:AGG:A | donor_gain | 0.9900 |
| 21:36070403:GGG:G | donor_gain | 0.9900 |
| 21:36070405:G:GG | donor_gain | 0.9900 |
| 21:36070405:GTAT:G | donor_loss | 0.9900 |
| 21:36070406:T:A | donor_loss | 0.9900 |
| 21:36070947:A:AG | acceptor_gain | 0.9900 |
| 21:36070948:AGTT:A | acceptor_gain | 0.9900 |
| 21:36070949:GTTG:G | acceptor_gain | 0.9900 |
AlphaMissense
1807 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:36072628:T:C | Y194H | 0.994 |
| 21:36070382:C:A | N89K | 0.993 |
| 21:36070382:C:G | N89K | 0.993 |
| 21:36071002:T:A | N114K | 0.993 |
| 21:36071002:T:G | N114K | 0.993 |
| 21:36072466:A:C | S140R | 0.993 |
| 21:36072468:C:A | S140R | 0.993 |
| 21:36072468:C:G | S140R | 0.993 |
| 21:36072613:T:A | W189R | 0.993 |
| 21:36072613:T:C | W189R | 0.993 |
| 21:36072642:G:C | K198N | 0.992 |
| 21:36072642:G:T | K198N | 0.992 |
| 21:36072475:A:C | S143R | 0.990 |
| 21:36072477:C:A | S143R | 0.990 |
| 21:36072477:C:G | S143R | 0.990 |
| 21:36072571:T:C | F175L | 0.990 |
| 21:36072573:T:A | F175L | 0.990 |
| 21:36072573:T:G | F175L | 0.990 |
| 21:36072726:C:G | C226W | 0.990 |
| 21:36072641:A:C | K198T | 0.989 |
| 21:36072459:C:A | N137K | 0.988 |
| 21:36072459:C:G | N137K | 0.988 |
| 21:36072467:G:T | S140I | 0.988 |
| 21:36072720:T:A | N224K | 0.988 |
| 21:36072720:T:G | N224K | 0.988 |
| 21:36072736:T:A | W230R | 0.988 |
| 21:36072736:T:C | W230R | 0.988 |
| 21:36072746:C:T | T233I | 0.988 |
| 21:36070161:G:C | G16R | 0.987 |
| 21:36070398:T:C | F95L | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000335693 (21:36070386 G>A), RS1000643873 (21:36071386 T>C,G), RS1000673305 (21:36071663 A>G), RS1000857332 (21:36073350 T>A), RS1002191556 (21:36071189 G>C), RS1002919189 (21:36071741 C>G), RS1003202795 (21:36069888 C>G), RS1003256032 (21:36070369 A>T), RS1003841480 (21:36068613 G>A,C), RS1005000177 (21:36069072 G>C), RS1005111 (21:36071683 T>A), RS1005694 (21:36071360 T>A,C,G), RS1005695 (21:36071267 G>A,C), RS1005696 (21:36071182 T>C,G), RS1006360426 (21:36071444 C>T)
Disease associations
OMIM: gene MIM:114830 | disease phenotypes: MIM:601399, MIM:614104
GenCC curated gene-disease
Mondo (3): hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1 (MONDO:0100083), DYRK1A-related intellectual disability syndrome (MONDO:0013578), thrombocytopenia (MONDO:0002049)
Orphanet (2): Familial platelet disorder with associated myeloid malignancy (Orphanet:71290), DYRK1A-related intellectual disability syndrome (Orphanet:464306)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003094_3 | Mitral valve prolapse | 1.000000e-08 |
| GCST006585_568 | Blood protein levels | 2.000000e-24 |
| GCST009391_1115 | Metabolite levels | 9.000000e-06 |
| GCST009391_985 | Metabolite levels | 8.000000e-07 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010448 | 3-hydroxyphenylacetic acid measurement |
| EFO:0010475 | deoxycholate measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5586 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 77,720 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL849 | TRICLOSAN | 4 | 77,720 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
4 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs20572 | Metabolism/PK | 3 | doxorubicin;doxorubicinol | Breast Neoplasms |
| rs20572 | Toxicity | 3 | cyclophosphamide;doxorubicin;fluorouracil | Breast Neoplasms |
| rs9024 | Dosage,Metabolism/PK | 3 | doxorubicin | Breast Neoplasms |
| rs9024 | Toxicity | 3 | anthracyclines and related substances | Cardiomyopathies;Neoplasms |
PharmGKB variants
7 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs9024 | CBR1, SETD4 | 3 | 5.75 | 2 | anthracyclines and related substances;doxorubicin |
| rs20572 | CBR1, SETD4 | 3 | 3.50 | 2 | cyclophosphamide;doxorubicin;fluorouracil;doxorubicin;doxorubicinol |
| rs1143663 | CBR1, SETD4 | 0.00 | 0 | ||
| rs41557318 | CBR1, SETD4 | 0.00 | 0 | ||
| rs25678 | CBR1 | 0.00 | 0 | ||
| rs3787728 | CBR1 | 0.00 | 0 | ||
| rs1005695 | CBR1 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Prostaglandin synthases
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| wedelolactone | Inhibition | 5.42 | pIC50 |
ChEMBL bioactivities
29 potent at pChembl≥5 of 35 total, top 29 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.47 | IC50 | 34 | nM | CHEMBL4640248 |
| 7.40 | Ki | 40 | nM | CHEMBL453375 |
| 7.22 | Ki | 60 | nM | TRICLOSAN |
| 7.12 | IC50 | 75 | nM | CHEMBL4640154 |
| 6.96 | Ki | 110 | nM | CHRYSIN |
| 6.92 | IC50 | 120 | nM | CHEMBL4639417 |
| 6.83 | Kd | 146.3 | nM | CHEMBL5653589 |
| 6.83 | ED50 | 146.3 | nM | CHEMBL5653589 |
| 6.68 | IC50 | 210 | nM | CHEMBL453375 |
| 6.60 | IC50 | 250 | nM | CHEMBL4646593 |
| 6.57 | IC50 | 270 | nM | CHEMBL4648793 |
| 6.43 | IC50 | 370 | nM | CHEMBL4634960 |
| 6.40 | IC50 | 400 | nM | TRICLOSAN |
| 6.36 | IC50 | 440 | nM | CHEMBL4644092 |
| 6.28 | Ki | 520 | nM | RADICICOL |
| 6.22 | Ki | 600 | nM | WEDELOLACTONE |
| 6.17 | IC50 | 670 | nM | CHRYSIN |
| 6.12 | IC50 | 759 | nM | CHEMBL590508 |
| 6.10 | IC50 | 788 | nM | CHEMBL590508 |
| 5.96 | IC50 | 1100 | nM | CHEMBL4089817 |
| 5.69 | Ki | 2030 | nM | BIOCHANIN |
| 5.52 | IC50 | 3000 | nM | CHEMBL601512 |
| 5.49 | IC50 | 3270 | nM | RADICICOL |
| 5.46 | Ki | 3430 | nM | NARINGENIN |
| 5.42 | IC50 | 3780 | nM | WEDELOLACTONE |
| 5.40 | IC50 | 4000 | nM | CHEMBL603058 |
| 5.40 | IC50 | 4000 | nM | CHEMBL589095 |
| 5.38 | IC50 | 4200 | nM | CHEMBL4081954 |
| 5.30 | IC50 | 5000 | nM | CHEMBL591062 |
PubChem BioAssay actives
28 with measured affinity, of 141 total; 22 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(2-chlorophenyl)-8-hydroxy-2-iminochromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.0340 | uM |
| (4S,9S,12E)-16,18-dihydroxy-4,9-dimethyl-3-oxabicyclo[12.4.0]octadeca-1(14),12,15,17-tetraene-2,8-dione | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 0.0400 | uM |
| Triclosan | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 0.0600 | uM |
| 8-hydroxy-2-imino-N-[2-(trifluoromethyl)phenyl]chromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.0750 | uM |
| 5,7-dihydroxy-2-phenylchromen-4-one | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 0.1100 | uM |
| N-(3-chlorophenyl)-8-hydroxy-2-iminochromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.1200 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148002: Binding affinity to human CBR1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1463 | uM |
| N-(3-ethylphenyl)-8-hydroxy-2-iminochromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.2500 | uM |
| 8-hydroxy-2-imino-N-(4-methylphenyl)chromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.2700 | uM |
| N-(3-fluorophenyl)-8-hydroxy-2-iminochromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.3700 | uM |
| N-(4-fluorophenyl)-8-hydroxy-2-iminochromene-3-carboxamide | 1661956: Inhibition of CBR1 (unknown origin) | ic50 | 0.4400 | uM |
| (4R,6R,8R,9Z,11E)-16-chloro-17,19-dihydroxy-4-methyl-3,7-dioxatricyclo[13.4.0.06,8]nonadeca-1(15),9,11,16,18-pentaene-2,13-dione | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 0.5200 | uM |
| 1,8,9-trihydroxy-3-methoxy-[1]benzofuro[3,2-c]chromen-6-one | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 0.6000 | uM |
| 3-(4-amino-1-tert-butyl-2,3-dihydropyrazolo[3,4-d]pyrimidin-3-yl)phenol | 456708: Inhibition of CBR-mediated NADPH-dependent reduction of menadione to menadiol | ic50 | 0.7590 | uM |
| N-[3-(4-fluorophenyl)propyl]-7-hydroxy-2-oxochromene-3-carboxamide | 1465667: Inhibition of recombinant human CBR1 using isatin as substrate | ic50 | 1.1000 | uM |
| 5,7-dihydroxy-3-(4-methoxyphenyl)chromen-4-one | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 2.0300 | uM |
| methyl N-[2-(5-hydroxy-4,9-dioxo-2H-benzo[f]indazol-3-yl)ethyl]carbamate | 456712: Displacement of menadione from human recombinant CBR expressed in Escherichia coli BL21 (DE3) | ic50 | 3.0000 | uM |
| (2S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-2,3-dihydrochromen-4-one | 347259: Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as NADPH oxidation using isatin as substrate | ki | 3.4300 | uM |
| methyl N-[2-[6-(N-ethylanilino)-4,7-dioxo-2H-indazol-3-yl]ethyl]carbamate | 456712: Displacement of menadione from human recombinant CBR expressed in Escherichia coli BL21 (DE3) | ic50 | 4.0000 | uM |
| methyl N-[2-[6-(N-methylanilino)-4,7-dioxo-2H-indazol-3-yl]ethyl]carbamate | 456712: Displacement of menadione from human recombinant CBR expressed in Escherichia coli BL21 (DE3) | ic50 | 4.0000 | uM |
| 7-hydroxy-N-[3-(4-hydroxyphenyl)propyl]-2-oxochromene-3-carboxamide | 1465667: Inhibition of recombinant human CBR1 using isatin as substrate | ic50 | 4.2000 | uM |
| methyl N-[2-(6,7-dichloro-5,8-dimethoxy-4,9-dioxo-2H-benzo[f]indazol-3-yl)ethyl]carbamate | 456712: Displacement of menadione from human recombinant CBR expressed in Escherichia coli BL21 (DE3) | ic50 | 5.0000 | uM |
CTD chemical–gene interactions
106 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Daunorubicin | increases chemical synthesis, decreases activity, increases metabolic processing, affects binding, decreases reduction (+4 more) | 6 |
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 6 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, decreases expression | 5 |
| Tobacco Smoke Pollution | increases expression, affects expression, decreases expression | 5 |
| Doxorubicin | decreases metabolic processing, affects reduction, increases reduction, increases expression, affects response to substance (+1 more) | 4 |
| 9,10-phenanthrenequinone | increases metabolic processing, affects binding, increases reaction, affects activity, affects cotreatment (+1 more) | 3 |
| 2,3-hexanedione | increases reduction, affects binding, increases metabolic processing, decreases reaction | 3 |
| NADP | decreases reaction, increases activity, affects activity, affects cotreatment, increases reduction (+1 more) | 3 |
| Quercetin | increases reduction, affects binding, decreases activity, affects cotreatment, decreases reaction (+1 more) | 3 |
| Cyclosporine | affects cotreatment, decreases expression | 3 |
| beta-Naphthoflavone | increases expression | 3 |
| Vitamin K 3 | increases metabolic processing, affects binding, decreases reaction | 3 |
| daunorubicinol | decreases chemical synthesis, decreases reduction, increases chemical synthesis, increases reduction, increases metabolic processing (+2 more) | 2 |
| arsenite | affects binding, increases reaction, increases abundance, increases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| isoxanthohumol | increases metabolic processing, increases reduction, decreases activity, decreases reaction | 2 |
| Resveratrol | affects response to substance, decreases activity, affects binding, decreases reaction, increases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Aerosols | affects expression, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Rutin | affects binding, decreases activity, decreases reaction, increases metabolic processing | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Genistein | affects binding, affects cotreatment, increases expression | 2 |
| S-Nitrosoglutathione | increases reduction, decreases reaction, affects binding, decreases activity, increases activity (+2 more) | 2 |
| aristolochic acid I | increases expression | 1 |
| frangulin A | decreases activity | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| testosterone enanthate | affects expression | 1 |
ChEMBL screening assays
35 unique, capped per target: 28 binding, 7 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1004498 | Binding | Binding affinity to human recombinant carbonyl reductase 1 expressed in Escherichia coli assessed as thermal shift by differential scanning fluorimetry in absence of cofactor | Discovery of a potent and selective inhibitor for human carbonyl reductase 1 from propionate scanning applied to the macrolide zearalenone. — Bioorg Med Chem |
| CHEMBL3532631 | ADMET | Activity of carbonyl reductase in liver cytosol (unknown origin) assessed as enzyme-mediated drug metabolism | Significance of reductive metabolism in human intestine and quantitative prediction of intestinal first-pass metabolism by cytosolic reductive enzymes. — Drug Metab Dispos |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2M9 | Abcam A-549 CBR1 KO | Cancer cell line | Male |
| CVCL_E1T2 | HAP1 CBR1 (-) 1 | Cancer cell line | Male |
| CVCL_E1T3 | HAP1 CBR1 (-) 2 | Cancer cell line | Male |
| CVCL_E1T4 | HAP1 CBR1 (-) 3 | Cancer cell line | Male |
| CVCL_E1T5 | HAP1 CBR1 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
241 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04906083 | PHASE4 | UNKNOWN | Avatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia |
| NCT05217719 | PHASE4 | UNKNOWN | Effects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients |
| NCT05255003 | PHASE4 | RECRUITING | STrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis |
| NCT05382013 | PHASE4 | UNKNOWN | Efficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment |
| NCT05944458 | PHASE4 | COMPLETED | Efficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients |
| NCT06562738 | PHASE4 | RECRUITING | Clinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia |
| NCT00037791 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00073580 | PHASE3 | COMPLETED | Angiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE) |
| NCT00102323 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy |
| NCT00102336 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy |
| NCT00116688 | PHASE3 | COMPLETED | Open Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) |
| NCT00128713 | PHASE3 | COMPLETED | Optimal Platelet Dose Strategy for Management of Thrombocytopenia |
| NCT00151866 | PHASE3 | COMPLETED | Efficacy of Transfusions With Platelets Stored in Platelet Additive Solution II Versus Plasma |
| NCT00261924 | PHASE3 | COMPLETED | Efficacy and Safety Study of Platelets Treated for Pathogen Inactivation and Stored for Up to Seven Days |
| NCT00415532 | PHASE3 | COMPLETED | Romiplostim (AMG 531) Versus Medical Standard of Care for Immune (Idiopathic) Thrombocytopenic Purpura |
| NCT00420914 | PHASE3 | TERMINATED | Strategies for Transfusion of Platelets (SToP) |
| NCT00501345 | PHASE3 | TERMINATED | Aspirin in Patients With Myocardial Infarction and Thrombocytopenia |
| NCT00508820 | PHASE3 | COMPLETED | An Open Label Study of Romiplostim in Adult Thrombocytopenic Subjects With ITP |
| NCT00678587 | PHASE3 | TERMINATED | Eltrombopag To Reduce The Need For Platelet Transfusion In Subjects With Chronic Liver Disease And Thrombocytopenia Undergoing Elective Invasive Procedures |
| NCT01438840 | PHASE3 | COMPLETED | Efficacy and Safety of Oral E5501 Plus Standard of Care for the Treatment of Thrombocytopenia in Adults With Chronic Immune Thrombocytopenia (Amendment 02) |
| NCT01444417 | PHASE3 | COMPLETED | Safety and Efficacy Study of Romiplostim to Treat Immune Thrombocytopenia (ITP) in Pediatric Patients |
| NCT01805648 | PHASE3 | UNKNOWN | Efficacy and Safety Study of Maintenance Treatment With rhTPO in Thrombocytopenic Subjects With ITP |
| NCT02244658 | PHASE3 | UNKNOWN | Recombinant Human Thrombopoietin (rhTPO) in Management of Chemotherapy-induced Thrombocytopenia in Acute Myelocytic Leukemia |
| NCT02389621 | PHASE3 | COMPLETED | Safety and Efficacy Study of Lusutrombopag for Thrombocytopenia in Patients With Chronic Liver Disease Undergoing Elective Invasive Procedures |
| NCT02444728 | PHASE3 | TERMINATED | Cyclophosphamide and Hydroxychloroquine for Thrombocytopenia in SLE |
| NCT02487563 | PHASE3 | COMPLETED | Prospective Study of Patients With Thrombocytopenia Following HSCT |
| NCT02578901 | PHASE3 | COMPLETED | American Trial Using Tranexamic Acid in Thrombocytopenia |
| NCT03326843 | PHASE3 | TERMINATED | Avatrombopag for the Treatment of Thrombocytopenia in Adults Scheduled for a Surgical Procedure |
| NCT03515096 | PHASE3 | COMPLETED | Eltrombopag vs. rhTPO to Increase Platelet Level After HSCT |
| NCT05563064 | PHASE3 | UNKNOWN | Effect of Herbal Formulation on Thrombocytes Count |
| NCT07442513 | PHASE3 | RECRUITING | Comparison of Etamsylate Versus Placebo to Prevent Bleeding in HSCT |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): DYRK1A-related intellectual disability syndrome, hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1, thrombocytopenia