CCDC13-AS1

Summary

CCDC13-AS1 (CCDC13 antisense RNA 1, HGNC:41142) is a long non-coding RNA gene on chromosome 3p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41142
Approved symbol	CCDC13-AS1
Name	CCDC13 antisense RNA 1
Location	3p22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000173811
Ensembl biotype	lncRNA
Entrez	100874114
RNAcentral	URS000028BF9B — lncRNA, 554 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000418161, ENST00000446950, ENST00000665649

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418161 — 3 exons

Exon	Start	End
ENSE00001646519	42732575	42732658
ENSE00001647768	42744943	42746768
ENSE00001729818	42742926	42743066

Expression profiles

Bgee: expression breadth ubiquitous, 150 present calls, max score 81.56.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0867 / max 14.3536, expressed in 45 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
36278	0.0867	45

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.56	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	75.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.44	gold quality
spinal cord	UBERON:0002240	71.97	gold quality
right uterine tube	UBERON:0001302	69.44	gold quality
hypothalamus	UBERON:0001898	67.16	gold quality
caudate nucleus	UBERON:0001873	66.97	gold quality
putamen	UBERON:0001874	66.82	gold quality
nucleus accumbens	UBERON:0001882	66.68	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.33	gold quality
prefrontal cortex	UBERON:0000451	66.17	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.16	gold quality
amygdala	UBERON:0001876	66.00	gold quality
adenohypophysis	UBERON:0002196	65.24	gold quality
ventricular zone	UBERON:0003053	64.68	gold quality
right frontal lobe	UBERON:0002810	64.56	gold quality
pituitary gland	UBERON:0000007	63.50	gold quality
substantia nigra	UBERON:0002038	63.18	gold quality
anterior cingulate cortex	UBERON:0009835	63.01	gold quality
left lobe of thyroid gland	UBERON:0001120	61.74	gold quality
mucosa of stomach	UBERON:0001199	61.64	gold quality
metanephros cortex	UBERON:0010533	61.58	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	61.49	gold quality
forebrain	UBERON:0001890	61.29	gold quality
corpus callosum	UBERON:0002336	61.23	gold quality
frontal cortex	UBERON:0001870	61.05	gold quality
neocortex	UBERON:0001950	61.02	gold quality
thyroid gland	UBERON:0002046	61.02	gold quality
lower esophagus	UBERON:0013473	60.93	gold quality
lower esophagus muscularis layer	UBERON:0035833	60.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.