CCDC13-AS2

Summary

CCDC13-AS2 (CCDC13 antisense RNA 2, HGNC:53019) is a long non-coding RNA gene on chromosome 3p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53019
Approved symbol	CCDC13-AS2
Name	CCDC13 antisense RNA 2
Location	3p22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225611
Ensembl biotype	lncRNA
Entrez	729083
RNAcentral	URS00005F3467 — lncRNA, 897 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000432377, ENST00000836456, ENST00000836457

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432377 — 2 exons

Exon	Start	End
ENSE00004255898	42773205	42773795
ENSE00004255899	42770592	42771077

Expression profiles

Bgee: expression breadth ubiquitous, 147 present calls, max score 88.53.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2221 / max 32.6245, expressed in 60 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
36279	0.2221	60

Top tissues by expression

235 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.53	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.89	gold quality
sural nerve	UBERON:0015488	81.79	gold quality
leukocyte	CL:0000738	73.92	gold quality
monocyte	CL:0000576	73.83	gold quality
granulocyte	CL:0000094	71.37	gold quality
blood	UBERON:0000178	67.58	gold quality
bone marrow cell	CL:0002092	67.43	silver quality
jejunal mucosa	UBERON:0000399	67.39	gold quality
right lobe of liver	UBERON:0001114	64.44	gold quality
ganglionic eminence	UBERON:0004023	63.83	gold quality
testis	UBERON:0000473	63.82	gold quality
right testis	UBERON:0004534	63.57	gold quality
left testis	UBERON:0004533	63.23	gold quality
cortical plate	UBERON:0005343	61.45	gold quality
mucosa of transverse colon	UBERON:0004991	61.22	gold quality
vermiform appendix	UBERON:0001154	58.26	gold quality
spleen	UBERON:0002106	57.45	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.65	gold quality
jejunum	UBERON:0002115	55.17	gold quality
liver	UBERON:0002107	54.85	gold quality
duodenum	UBERON:0002114	54.50	gold quality
caecum	UBERON:0001153	54.28	gold quality
calcaneal tendon	UBERON:0003701	53.84	gold quality
gall bladder	UBERON:0002110	53.53	gold quality
smooth muscle tissue	UBERON:0001135	53.04	gold quality
right lung	UBERON:0002167	52.70	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.43	gold quality
left lobe of thyroid gland	UBERON:0001120	50.67	gold quality
muscle of leg	UBERON:0001383	50.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.