CCDC15-DT

Summary

CCDC15-DT (CCDC15 divergent transcript, HGNC:54193) is a long non-coding RNA gene on chromosome 11q24.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54193
Approved symbol	CCDC15-DT
Name	CCDC15 divergent transcript
Location	11q24.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000285825
Ensembl biotype	lncRNA
Entrez	105369547
RNAcentral	URS0002A60FA8 — lncRNA, 2246 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000649496, ENST00000655771, ENST00000667169, ENST00000793179, ENST00000793180, ENST00000793181, ENST00000793182

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649496 — 3 exons

Exon	Start	End
ENSE00003836312	124950902	124951550
ENSE00004175805	124950093	124950559
ENSE00004175807	124953482	124953991

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 81.50.

FANTOM5 (CAGE): breadth broad, TPM avg 0.7246 / max 25.0981, expressed in 403 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
122980	0.7246	403

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.50	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.28	gold quality
cortical plate	UBERON:0005343	65.63	gold quality
islet of Langerhans	UBERON:0000006	65.28	gold quality
ganglionic eminence	UBERON:0004023	65.10	gold quality
substantia nigra	UBERON:0002038	64.80	gold quality
amygdala	UBERON:0001876	64.56	gold quality
temporal lobe	UBERON:0001871	64.52	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	64.46	gold quality
ventricular zone	UBERON:0003053	64.40	gold quality
putamen	UBERON:0001874	63.54	gold quality
Ammon’s horn	UBERON:0001954	62.60	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.47	gold quality
nucleus accumbens	UBERON:0001882	62.43	gold quality
anterior cingulate cortex	UBERON:0009835	62.34	gold quality
hypothalamus	UBERON:0001898	62.19	gold quality
primary visual cortex	UBERON:0002436	61.99	gold quality
prefrontal cortex	UBERON:0000451	61.71	gold quality
caudate nucleus	UBERON:0001873	61.56	gold quality
cerebral cortex	UBERON:0000956	61.26	gold quality
stromal cell of endometrium	CL:0002255	60.96	gold quality
gastrocnemius	UBERON:0001388	60.93	gold quality
muscle of leg	UBERON:0001383	60.82	gold quality
skeletal muscle tissue	UBERON:0001134	60.78	gold quality
frontal cortex	UBERON:0001870	60.73	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.60	gold quality
right lobe of liver	UBERON:0001114	60.54	gold quality
liver	UBERON:0002107	60.01	gold quality
brain	UBERON:0000955	59.76	gold quality
right frontal lobe	UBERON:0002810	59.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.