CCDC28A-AS1

Summary

CCDC28A-AS1 (CCDC28A antisense RNA 1, HGNC:51715) is a long non-coding RNA gene on chromosome 6q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51715
Approved symbol	CCDC28A-AS1
Name	CCDC28A antisense RNA 1
Location	6q24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279968
Ensembl biotype	lncRNA
Entrez	100507462
RNAcentral	URS0000E60A6D — lncRNA, 2732 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000615663, ENST00000624173, ENST00000809908, ENST00000809909

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000615663 — 5 exons

Exon	Start	End
ENSE00003734596	138764257	138764378
ENSE00003741722	138750128	138750269
ENSE00003754972	138756017	138756093
ENSE00003755200	138756605	138756627
ENSE00003758922	138773207	138773414

Expression profiles

Bgee: expression breadth ubiquitous, 150 present calls, max score 84.78.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.98	gold quality
bone marrow cell	CL:0002092	70.70	silver quality
right testis	UBERON:0004534	67.47	gold quality
left testis	UBERON:0004533	66.76	gold quality
testis	UBERON:0000473	66.35	gold quality
ventricular zone	UBERON:0003053	63.68	gold quality
cortical plate	UBERON:0005343	62.75	gold quality
ganglionic eminence	UBERON:0004023	60.44	gold quality
stromal cell of endometrium	CL:0002255	59.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.04	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	57.42	gold quality
right lobe of liver	UBERON:0001114	54.92	gold quality
right adrenal gland	UBERON:0001233	54.18	gold quality
adrenal tissue	UBERON:0018303	53.74	gold quality
lymph node	UBERON:0000029	53.46	gold quality
right adrenal gland cortex	UBERON:0035827	53.45	gold quality
upper leg skin	UBERON:0004262	53.38	gold quality
right uterine tube	UBERON:0001302	52.96	gold quality
islet of Langerhans	UBERON:0000006	52.67	gold quality
prefrontal cortex	UBERON:0000451	52.54	gold quality
vermiform appendix	UBERON:0001154	52.41	gold quality
monocyte	CL:0000576	51.95	gold quality
rectum	UBERON:0001052	51.93	gold quality
left adrenal gland	UBERON:0001234	51.77	gold quality
adrenal gland	UBERON:0002369	51.69	gold quality
leukocyte	CL:0000738	51.66	gold quality
pigmented layer of retina	UBERON:0001782	51.12	gold quality
left adrenal gland cortex	UBERON:0035825	50.88	gold quality
gall bladder	UBERON:0002110	50.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.