CCDC28B
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Also known as MGC1203RP4-622L5.5LTAP2B
Summary
CCDC28B (coiled-coil domain containing 28B, HGNC:28163) is a protein-coding gene on chromosome 1p35.2, encoding Coiled-coil domain-containing protein 28B (Q9BUN5). Involved in ciliogenesis.
The product of this gene localizes to centrosomes and basal bodies. The protein colocalizes with several proteins associated with Bardet-Biedl syndrome (BBS) and participates in the regulation of cilia development. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 79140 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Bardet-Biedl syndrome 1 (No Known Disease Relationship, GenCC)
- Clinical variants (ClinVar): 58 total
- Phenotypes (HPO): 66
- MANE Select transcript:
NM_024296
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28163 |
| Approved symbol | CCDC28B |
| Name | coiled-coil domain containing 28B |
| Location | 1p35.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC1203, RP4-622L5.5, LTAP2B |
| Ensembl gene | ENSG00000160050 |
| Ensembl biotype | protein_coding |
| OMIM | 610162 |
| Entrez | 79140 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 7 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000373602, ENST00000421922, ENST00000461819, ENST00000469003, ENST00000483009, ENST00000680046, ENST00000680626, ENST00000681089, ENST00000681230, ENST00000868525, ENST00000868526, ENST00000934297, ENST00000966999
RefSeq mRNA: 2 — MANE Select: NM_024296
NM_001301011, NM_024296
CCDS: CCDS354, CCDS72749
Canonical transcript exons
ENST00000373602 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001049460 | 32204186 | 32204379 |
| ENSE00001812361 | 32200595 | 32200709 |
| ENSE00001900646 | 32205194 | 32205387 |
| ENSE00003589324 | 32204598 | 32204620 |
| ENSE00003645136 | 32203879 | 32204045 |
| ENSE00003914661 | 32201913 | 32202099 |
Expression profiles
Bgee: expression breadth ubiquitous, 243 present calls, max score 97.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.1057 / max 162.3651, expressed in 1568 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1956 | 7.4527 | 1553 |
| 1958 | 1.1873 | 383 |
| 1957 | 0.4657 | 224 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| hindlimb stylopod muscle | UBERON:0004252 | 97.23 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.52 | gold quality |
| muscle of leg | UBERON:0001383 | 95.05 | gold quality |
| triceps brachii | UBERON:0001509 | 94.10 | gold quality |
| muscle organ | UBERON:0001630 | 94.09 | gold quality |
| right uterine tube | UBERON:0001302 | 93.79 | gold quality |
| cortical plate | UBERON:0005343 | 93.45 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 92.85 | gold quality |
| right testis | UBERON:0004534 | 92.41 | gold quality |
| left testis | UBERON:0004533 | 92.24 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 91.72 | gold quality |
| vastus lateralis | UBERON:0001379 | 91.61 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.44 | gold quality |
| apex of heart | UBERON:0002098 | 91.16 | gold quality |
| quadriceps femoris | UBERON:0001377 | 91.09 | gold quality |
| ganglionic eminence | UBERON:0004023 | 90.86 | gold quality |
| biceps brachii | UBERON:0001507 | 90.80 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 90.64 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 90.61 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 90.46 | gold quality |
| cerebellar cortex | UBERON:0002129 | 90.38 | gold quality |
| pituitary gland | UBERON:0000007 | 90.34 | gold quality |
| testis | UBERON:0000473 | 89.74 | gold quality |
| gluteal muscle | UBERON:0002000 | 89.50 | gold quality |
| muscle tissue | UBERON:0002385 | 89.37 | gold quality |
| cerebellum | UBERON:0002037 | 89.16 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 89.15 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.85 | gold quality |
| granulocyte | CL:0000094 | 88.62 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 88.19 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8498 | yes | 647.28 |
| E-CURD-112 | yes | 32.25 |
| E-HCAD-6 | yes | 18.28 |
| E-ANND-3 | yes | 5.92 |
| E-MTAB-6386 | no | 86.64 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
11 targeting CCDC28B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-12122 | 99.56 | 69.33 | 1672 |
| HSA-MIR-3123 | 99.47 | 67.15 | 2693 |
| HSA-MIR-3160-5P | 99.28 | 69.07 | 1938 |
| HSA-MIR-4709-3P | 98.88 | 68.04 | 1594 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-423-5P | 98.69 | 67.48 | 1522 |
| HSA-MIR-3184-5P | 98.56 | 67.13 | 1491 |
Literature-anchored findings (GeneRIF, showing 5)
- identification of a novel locus, MGC1203, that contributes epistatic alleles to Bardet-Biedl syndrome, a pleiotropic, oligogenic disorder; MGC1203 encodes a pericentriolar protein that interacts and colocalizes with the BBS proteins (PMID:16327777)
- reports CCDC28B as a novel protein involved in the process of ciliogenesis whilst providing functional insight into the cellular basis of its modifier effect in Bardet-Biedl syndrome. (PMID:23015189)
- Findings implicate CCDC28B in the regulation of mTORC2, and uncover a novel function of SIN1 regulating cilia length that is likely independent of mTOR signaling. (PMID:23727834)
- these studies demonstrate that kinesin 1 regulates ciliogenesis through CCDC28B (PMID:29445114)
- A CVID-associated variant in the ciliogenesis protein CCDC28B disrupts immune synapse assembly. (PMID:34294890)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ccdc28b | ENSDARG00000011222 |
| mus_musculus | Ccdc28b | ENSMUSG00000028795 |
| rattus_norvegicus | Ccdc28b | ENSRNOG00000047578 |
| drosophila_melanogaster | CG10874 | FBGN0031395 |
Paralogs (1): CCDC28A (ENSG00000024862)
Protein
Protein identifiers
Coiled-coil domain-containing protein 28B — Q9BUN5 (reviewed: Q9BUN5)
All UniProt accessions (3): Q9BUN5, A0A7P0TB33, E9PM81
UniProt curated annotations — full annotation on UniProt →
Function. Involved in ciliogenesis. Regulates cilia length through its interaction with MAPKAP1/SIN1 but independently of mTORC2 complex. Modulates mTORC2 complex assembly and function, possibly enhances AKT1 phosphorylation. Does not seem to modulate assembly and function of mTORC1 complex.
Subunit / interactions. Interacts with BBS1, BBS2, BBS4, BBS5, BBS6, BBS7 and TTC8/BBS8. Interacts with MAPKAP1/SIN1 isoform 1 and RICTOR.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome.
Disease relevance. Bardet-Biedl syndrome (BBS) [MIM:209900] A syndrome characterized by usually severe pigmentary retinopathy, early-onset obesity, polydactyly, hypogenitalism, renal malformation and intellectual disability. Secondary features include diabetes mellitus, hypertension and congenital heart disease. Bardet-Biedl syndrome inheritance is autosomal recessive, but three mutated alleles (two at one locus, and a third at a second locus) may be required for clinical manifestation of some forms of the disease. The gene represented in this entry acts as a disease modifier.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BUN5-1 | 1 | yes |
| Q9BUN5-3 | 2 |
RefSeq proteins (2): NP_001287940, NP_077272* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR025271 | CCDC28 | Family |
Pfam: PF13270
UniProt features (11 total): modified residue 3, region of interest 2, compositionally biased region 2, chain 1, sequence variant 1, coiled-coil region 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BUN5-F1 | 71.15 | 0.28 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 1, 46, 115
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 281 (showing top):
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GOBP_BEHAVIOR, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_CILIUM_ORGANIZATION, GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_INTRASPECIES_INTERACTION_BETWEEN_ORGANISMS, GOCC_CENTROSOME, GOBP_ORGANELLE_ASSEMBLY, DODD_NASOPHARYNGEAL_CARCINOMA_UP, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GOBP_CELL_PROJECTION_ORGANIZATION, SCHLINGEMANN_SKIN_CARCINOGENESIS_TPA_DN, chr1p35, THUM_SYSTOLIC_HEART_FAILURE_DN, RAY_TUMORIGENESIS_BY_ERBB2_CDC25A_DN, GAZDA_DIAMOND_BLACKFAN_ANEMIA_ERYTHROID_DN
GO Biological Process (2): cilium assembly (GO:0060271), cell projection organization (GO:0030030)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): centrosome (GO:0005813), cytoplasm (GO:0005737), cytoskeleton (GO:0005856)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| cellular component organization | 1 |
| binding | 1 |
| centriole | 1 |
| microtubule organizing center | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
332 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CCDC28B | BBS4 | Q96RK4 | 873 |
| CCDC28B | BBS1 | Q8NFJ9 | 862 |
| CCDC28B | BBS7 | Q8IWZ6 | 847 |
| CCDC28B | TTC8 | Q8TAM2 | 844 |
| CCDC28B | BBS5 | Q8N3I7 | 836 |
| CCDC28B | WDPCP | O95876 | 820 |
| CCDC28B | BBS12 | Q6ZW61 | 817 |
| CCDC28B | MKS1 | Q9NXB0 | 801 |
| CCDC28B | BBS10 | Q8TAM1 | 801 |
| CCDC28B | TMEM67 | Q5HYA8 | 754 |
| CCDC28B | BBS9 | P78514 | 729 |
| CCDC28B | BBS2 | Q9BXC9 | 729 |
| CCDC28B | TRIM32 | Q13049 | 726 |
| CCDC28B | CEP290 | O15078 | 694 |
| CCDC28B | SREK1IP1 | Q8N9Q2 | 548 |
IntAct
29 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCDC28B | ATRIP | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATRIP | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCDC28B | HSPA1L | psi-mi:“MI:0914”(association) | 0.510 |
| CCDC28B | BBS4 | psi-mi:“MI:0915”(physical association) | 0.510 |
| CCDC28B | BBS1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCDC28B | TTC8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCDC28B | MKKS | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCDC28B | BBS5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCDC28B | BBS2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCDC28B | BBS7 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IFT81 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| OSGEP | HYKK | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| LAGE3 | HYKK | psi-mi:“MI:0914”(association) | 0.350 |
| S100A6 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| NAA30 | HARS2 | psi-mi:“MI:0914”(association) | 0.350 |
| CCDC28B | IFT74 | psi-mi:“MI:0915”(physical association) | 0.000 |
| HSPA1L | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.000 |
| PRAME | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.000 |
| LAGE3 | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.000 |
| IFT81 | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.000 |
| OSGEP | CCDC28B | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (28): ATRIP (Two-hybrid), CCDC28B (Reconstituted Complex), CCDC28B (Affinity Capture-MS), CCDC28B (Affinity Capture-MS), CCDC28B (Affinity Capture-MS), CCDC28B (Affinity Capture-MS), CCDC28B (Affinity Capture-MS), CCDC28B (Affinity Capture-MS), IFT74 (Affinity Capture-MS), CCDC28B (Affinity Capture-RNA), CCDC28B (Two-hybrid), CCDC28B (Two-hybrid), CCDC28B (Two-hybrid), SCNM1 (Two-hybrid), GRB2 (Two-hybrid)
ESM2 similar proteins: A0A287BDC1, A8YXY8, B1AXD8, B3F209, B3KU38, B5DF41, O00287, O14503, O15079, O35185, O54972, P03966, P04198, P12755, P18444, P26014, Q0D2I5, Q25C79, Q2KJ58, Q3MHV6, Q3UR85, Q50H33, Q53H80, Q5BL57, Q5EA15, Q5FWN7, Q5RAI7, Q60591, Q60698, Q61976, Q63379, Q68FF7, Q6GQB5, Q6ZWB6, Q7ZY70, Q8BXL9, Q8CEG5, Q8CI08, Q8N228, Q8ND83
Diamond homologs: Q8CEG5, Q8IWP9, Q9BUN5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 23 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| BBSome-mediated cargo-targeting to cilium | 7 | 193.1× | 8e-14 |
| Cargo trafficking to the periciliary membrane | 6 | 82.8× | 1e-09 |
| Cilium Assembly | 6 | 36.2× | 2e-07 |
| Organelle biogenesis and maintenance | 6 | 22.0× | 2e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| melanosome transport | 5 | 174.1× | 3e-09 |
| non-motile cilium assembly | 7 | 92.5× | 5e-11 |
| fat cell differentiation | 6 | 49.4× | 5e-08 |
| cilium assembly | 10 | 33.5× | 1e-11 |
| visual perception | 6 | 21.7× | 3e-06 |
| protein transport | 5 | 10.0× | 7e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
58 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 38 |
| Likely benign | 2 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
977 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:32201912:G:GT | acceptor_loss | 1.0000 |
| 1:32202100:G:T | donor_loss | 1.0000 |
| 1:32202101:T:G | donor_loss | 1.0000 |
| 1:32202681:A:T | donor_gain | 1.0000 |
| 1:32203877:A:AG | acceptor_gain | 1.0000 |
| 1:32203878:G:GG | acceptor_gain | 1.0000 |
| 1:32203878:GA:G | acceptor_gain | 1.0000 |
| 1:32203878:GAGTA:G | acceptor_gain | 1.0000 |
| 1:32204043:TCGGT:T | donor_loss | 1.0000 |
| 1:32204044:CGGTG:C | donor_loss | 1.0000 |
| 1:32204045:GGTG:G | donor_loss | 1.0000 |
| 1:32204046:G:C | donor_loss | 1.0000 |
| 1:32204046:G:GG | donor_gain | 1.0000 |
| 1:32204047:T:A | donor_loss | 1.0000 |
| 1:32204375:GCAAT:G | donor_gain | 1.0000 |
| 1:32204378:AT:A | donor_gain | 1.0000 |
| 1:32204380:G:GG | donor_gain | 1.0000 |
| 1:32201272:G:GT | donor_gain | 0.9900 |
| 1:32201306:G:GT | donor_gain | 0.9900 |
| 1:32201893:T:TA | acceptor_gain | 0.9900 |
| 1:32201894:G:A | acceptor_gain | 0.9900 |
| 1:32201911:A:AG | acceptor_gain | 0.9900 |
| 1:32201911:AG:A | acceptor_gain | 0.9900 |
| 1:32201912:G:GA | acceptor_gain | 0.9900 |
| 1:32201912:GG:G | acceptor_gain | 0.9900 |
| 1:32201912:GGCCT:G | acceptor_gain | 0.9900 |
| 1:32202097:GAG:G | donor_gain | 0.9900 |
| 1:32202098:AGGTG:A | donor_gain | 0.9900 |
| 1:32202692:A:T | donor_gain | 0.9900 |
| 1:32203873:A:AG | acceptor_gain | 0.9900 |
AlphaMissense
1303 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:32203955:T:C | F81L | 1.000 |
| 1:32203957:C:A | F81L | 1.000 |
| 1:32203957:C:G | F81L | 1.000 |
| 1:32203998:T:A | L95H | 1.000 |
| 1:32203998:T:C | L95P | 1.000 |
| 1:32204007:T:C | L98P | 1.000 |
| 1:32204010:T:A | L99H | 1.000 |
| 1:32204010:T:C | L99P | 1.000 |
| 1:32204018:T:C | F102L | 1.000 |
| 1:32204019:T:C | F102S | 1.000 |
| 1:32204019:T:G | F102C | 1.000 |
| 1:32204020:C:A | F102L | 1.000 |
| 1:32204020:C:G | F102L | 1.000 |
| 1:32204034:T:C | L107P | 1.000 |
| 1:32204042:T:C | F110L | 1.000 |
| 1:32204044:C:A | F110L | 1.000 |
| 1:32204044:C:G | F110L | 1.000 |
| 1:32204210:T:C | L119P | 1.000 |
| 1:32204219:T:A | V122D | 1.000 |
| 1:32204222:G:C | R123P | 1.000 |
| 1:32204231:A:C | Q126P | 1.000 |
| 1:32204232:G:C | Q126H | 1.000 |
| 1:32204232:G:T | Q126H | 1.000 |
| 1:32204240:T:C | L129P | 1.000 |
| 1:32204242:G:C | A130P | 1.000 |
| 1:32204243:C:A | A130D | 1.000 |
| 1:32204249:T:C | L132P | 1.000 |
| 1:32204251:C:G | H133D | 1.000 |
| 1:32204254:T:C | F134L | 1.000 |
| 1:32204255:T:C | F134S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000374182 (1:32197781 T>C), RS1000383939 (1:32204373 T>A,C), RS1000484779 (1:32198342 C>G,T), RS1000797794 (1:32203708 C>T), RS1001005750 (1:32197477 C>T), RS1001100101 (1:32203994 G>A), RS1001436545 (1:32205511 C>A,G,T), RS1001647015 (1:32199212 A>G), RS1002125984 (1:32194111 G>A), RS1002206483 (1:32199904 G>T), RS1002326428 (1:32195967 ATTTCTTTTTCTTTTTTTTTTTT>A), RS1002880861 (1:32202814 T>C), RS1002956364 (1:32196766 C>G,T), RS1003001769 (1:32200407 G>A), RS1003398158 (1:32196379 T>C,G)
Disease associations
OMIM: gene MIM:610162 | disease phenotypes: MIM:209900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Bardet-Biedl syndrome 1 | No Known Disease Relationship | Autosomal recessive |
Mondo (2): Bardet-Biedl syndrome (MONDO:0015229), Bardet-Biedl syndrome 1 (MONDO:0008854)
Orphanet (1): Bardet-Biedl syndrome (Orphanet:110)
HPO phenotypes
66 total (30 of 66 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000054 | Micropenis |
| HP:0000077 | Abnormality of the kidney |
| HP:0000135 | Hypogonadism |
| HP:0000137 | Abnormality of the ovary |
| HP:0000148 | Vaginal atresia |
| HP:0000218 | High palate |
| HP:0000256 | Macrocephaly |
| HP:0000365 | Hearing impairment |
| HP:0000483 | Astigmatism |
| HP:0000486 | Strabismus |
| HP:0000501 | Glaucoma |
| HP:0000508 | Ptosis |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000518 | Cataract |
| HP:0000545 | Myopia |
| HP:0000546 | Retinal degeneration |
| HP:0000556 | Retinal dystrophy |
| HP:0000639 | Nystagmus |
| HP:0000662 | Nyctalopia |
| HP:0000668 | Hypodontia |
| HP:0000678 | Dental crowding |
| HP:0000750 | Delayed speech and language development |
| HP:0000786 | Primary amenorrhea |
| HP:0000819 | Diabetes mellitus |
| HP:0000822 | Hypertension |
| HP:0000855 | Insulin resistance |
| HP:0001007 | Hirsutism |
| HP:0001080 | Biliary tract abnormality |
| HP:0001156 | Brachydactyly |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020788 | Bardet-Biedl Syndrome | C10.228.140.617.200; C11.270.684.624; C16.131.077.245.125; C16.320.184.125 |
| C537909 | Bardet-Biedl syndrome 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, decreases methylation, affects cotreatment | 2 |
| Cisplatin | affects expression, affects cotreatment, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| sulforaphane | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Decitabine | affects expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | increases response to substance | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arbutin | decreases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
Clinical trials (associated diseases)
18 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03746522 | PHASE3 | COMPLETED | Setmelanotide (RM-493), Melanocortin-4 Receptor (MC4R) Agonist, in Bardet-Biedl Syndrome (BBS) and Alström Syndrome (AS) Participants With Moderate to Severe Obesity |
| NCT04966741 | PHASE3 | COMPLETED | Setmelanotide in Pediatric Participants With Rare Genetic Diseases of Obesity |
| NCT05194124 | PHASE3 | COMPLETED | Phase 3 Crossover Trial of Two Formulations of Setmelanotide in Participants With Specific Gene Defects in the MC4R Pathway |
| NCT03490019 | PHASE2 | WITHDRAWN | Treatment of Bardet-Biedl-Syndrome With Metformin for Evaluation of a Possible Visual Improvement |
| NCT07269665 | EARLY_PHASE1 | NOT_YET_RECRUITING | First-in-Human, Dose Escalation Trial of AXV-101 in BBS1-Related Retinal Degeneration |
| NCT00078091 | Not specified | TERMINATED | Genetics and Clinical Characteristics of Bardet-Biedl Syndrome |
| NCT00213811 | Not specified | COMPLETED | Bardet-Biedl Syndrome Study: Clinical and Genetic Epidemiology Study in Adults |
| NCT01401998 | Not specified | RECRUITING | ARPKD Database Study |
| NCT02329210 | Not specified | RECRUITING | Clinical Registry Investigating Bardet-Biedl Syndrome |
| NCT02435940 | Not specified | RECRUITING | Inherited Retinal Degenerative Disease Registry |
| NCT04461444 | Not specified | RECRUITING | COhort for Bardet-Bield Syndrome and Alström Syndrome for Translational Research Monocentric Interventional Study |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04874909 | Not specified | COMPLETED | Classification, Functional Stratification and Biomarkers in Ciliopathy (CILLICORIRCM) |
| NCT05183802 | Not specified | APPROVED_FOR_MARKETING | An Expanded Access Protocol for Setmelanotide for Treatment of Bardet-Biedl Syndrome (BBS) |
| NCT05400278 | Not specified | COMPLETED | Characterizing the Genotype and Phenotype in Adults With Bardet-Biedl Syndrome |
| NCT06239064 | Not specified | ACTIVE_NOT_RECRUITING | Early Genetic Identification of Obesity |
| NCT06615011 | Not specified | NOT_YET_RECRUITING | Bardet Beidle Syndrome in a Syrian Adolescent : a Rare Case Report |
| NCT07602803 | Not specified | COMPLETED | The Effect of GLP1 Agonists on Weight Loss in BBS Cohort in the UK |
Related Atlas pages
- Associated diseases: Bardet-Biedl syndrome 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Bardet-Biedl syndrome, Bardet-Biedl syndrome 1