CCDC39-AS1

Summary

CCDC39-AS1 (CCDC39 antisense RNA 1, HGNC:41089) is a long non-coding RNA gene on chromosome 3q26.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41089
Approved symbol	CCDC39-AS1
Name	CCDC39 antisense RNA 1
Location	3q26.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000243187
Ensembl biotype	lncRNA
Entrez	100874112
RNAcentral	URS00026A26E5 — lncRNA, 289 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000495357, ENST00000793771

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000495357 — 2 exons

Exon	Start	End
ENSE00001889364	180680084	180680190
ENSE00001957254	180700274	180700449

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 95.92.

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	95.92	gold quality
hindlimb stylopod muscle	UBERON:0004252	77.74	gold quality
calcaneal tendon	UBERON:0003701	77.34	gold quality
skeletal muscle tissue	UBERON:0001134	77.29	gold quality
right uterine tube	UBERON:0001302	75.21	gold quality
mucosa of stomach	UBERON:0001199	66.92	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.84	gold quality
prefrontal cortex	UBERON:0000451	65.94	gold quality
muscle of leg	UBERON:0001383	65.52	gold quality
right ovary	UBERON:0002118	65.00	gold quality
corpus callosum	UBERON:0002336	64.97	gold quality
gall bladder	UBERON:0002110	64.92	gold quality
endocervix	UBERON:0000458	63.49	gold quality
islet of Langerhans	UBERON:0000006	63.35	gold quality
ovary	UBERON:0000992	63.31	gold quality
gastrocnemius	UBERON:0001388	63.24	gold quality
left ovary	UBERON:0002119	62.89	gold quality
fallopian tube	UBERON:0003889	60.95	gold quality
ectocervix	UBERON:0012249	59.20	gold quality
blood	UBERON:0000178	59.15	gold quality
subcutaneous adipose tissue	UBERON:0002190	58.90	gold quality
endometrium	UBERON:0001295	58.71	gold quality
body of pancreas	UBERON:0001150	58.63	gold quality
fundus of stomach	UBERON:0001160	58.54	gold quality
monocyte	CL:0000576	58.14	gold quality
tibial artery	UBERON:0007610	57.26	gold quality
popliteal artery	UBERON:0002250	57.20	gold quality
left coronary artery	UBERON:0001626	57.13	gold quality
liver	UBERON:0002107	56.87	gold quality
myometrium	UBERON:0001296	56.80	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.