CCDC51
gene geneOn this page
Also known as FLJ12436MITOK
Summary
CCDC51 (coiled-coil domain containing 51, HGNC:25714) is a protein-coding gene on chromosome 3p21.31, encoding Mitochondrial potassium channel (Q96ER9). Pore-forming subunit of the mitochondrial ATP-gated potassium channel (mitoK(ATP)). It is a selective cancer dependency (DepMap: 12.5% of cell lines).
Enables mitochondrial ATP-gated potassium channel activity. Involved in cell volume homeostasis and mitochondrial potassium ion transmembrane transport. Located in mitochondrial inner membrane. Part of mitochondrial ATP-gated potassium channel complex.
Source: NCBI Gene 79714 — RefSeq curated summary.
At a glance
- GWAS associations: 9
- Clinical variants (ClinVar): 89 total
- Phenotypes (HPO): 1
- Cancer dependency (DepMap): dependent in 12.5% of screened cell lines
- MANE Select transcript:
NM_001256964
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25714 |
| Approved symbol | CCDC51 |
| Name | coiled-coil domain containing 51 |
| Location | 3p21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ12436, MITOK |
| Ensembl gene | ENSG00000164051 |
| Ensembl biotype | protein_coding |
| OMIM | 618585 |
| Entrez | 79714 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 21 protein_coding
ENST00000395694, ENST00000412398, ENST00000438370, ENST00000442740, ENST00000446140, ENST00000447018, ENST00000869046, ENST00000869047, ENST00000869048, ENST00000869049, ENST00000938991, ENST00000938992, ENST00000938993, ENST00000938994, ENST00000938995, ENST00000938996, ENST00000938997, ENST00000938998, ENST00000938999, ENST00000939000, ENST00000955195
RefSeq mRNA: 7 — MANE Select: NM_001256964
NM_001256964, NM_001256965, NM_001256966, NM_001256967, NM_001256968, NM_001256969, NM_024661
CCDS: CCDS2766, CCDS58830
Canonical transcript exons
ENST00000395694 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001205979 | 48434817 | 48435136 |
| ENSE00001692576 | 48439988 | 48440119 |
| ENSE00003784509 | 48433707 | 48433871 |
| ENSE00003848956 | 48432173 | 48433166 |
Expression profiles
Bgee: expression breadth ubiquitous, 234 present calls, max score 93.05.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.5941 / max 68.3181, expressed in 1714 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 42118 | 3.7453 | 1547 |
| 42119 | 2.2264 | 1377 |
| 42117 | 0.4194 | 208 |
| 42116 | 0.2030 | 98 |
Top tissues by expression
259 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 93.05 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 88.01 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.95 | gold quality |
| gluteal muscle | UBERON:0002000 | 86.90 | silver quality |
| pancreatic ductal cell | CL:0002079 | 86.38 | silver quality |
| nephron tubule | UBERON:0001231 | 86.36 | gold quality |
| squamous epithelium | UBERON:0006914 | 86.33 | silver quality |
| esophagus squamous epithelium | UBERON:0006920 | 86.29 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 86.17 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 86.07 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.81 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 85.72 | gold quality |
| apex of heart | UBERON:0002098 | 85.32 | gold quality |
| gingival epithelium | UBERON:0001949 | 85.15 | silver quality |
| mucosa of transverse colon | UBERON:0004991 | 85.15 | gold quality |
| amniotic fluid | UBERON:0000173 | 84.96 | gold quality |
| right adrenal gland | UBERON:0001233 | 84.92 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 84.35 | gold quality |
| renal glomerulus | UBERON:0000074 | 84.22 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 83.93 | silver quality |
| metanephric glomerulus | UBERON:0004736 | 83.91 | gold quality |
| heart right ventricle | UBERON:0002080 | 83.70 | gold quality |
| gingiva | UBERON:0001828 | 83.69 | silver quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 83.66 | silver quality |
| kidney epithelium | UBERON:0004819 | 83.61 | silver quality |
| left adrenal gland | UBERON:0001234 | 83.59 | gold quality |
| deltoid | UBERON:0001476 | 83.59 | silver quality |
| tongue squamous epithelium | UBERON:0006919 | 83.13 | silver quality |
| rectum | UBERON:0001052 | 82.96 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 82.92 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.17 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
13 targeting CCDC51, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-2052 | 99.79 | 69.37 | 2031 |
| HSA-MIR-377-5P | 99.70 | 65.28 | 712 |
| HSA-MIR-6086 | 99.70 | 65.38 | 699 |
| HSA-MIR-3618 | 99.69 | 68.57 | 1012 |
| HSA-MIR-4520-2-3P | 99.14 | 69.28 | 1009 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-4520-3P | 98.75 | 66.55 | 963 |
| HSA-MIR-4684-5P | 98.29 | 67.99 | 1650 |
| HSA-MIR-1912-5P | 97.94 | 67.98 | 832 |
| HSA-MIR-3664-3P | 97.85 | 67.62 | 1452 |
| HSA-MIR-510-5P | 97.66 | 65.82 | 916 |
| HSA-MIR-585-5P | 97.54 | 69.02 | 955 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 12.5% of screened cell lines.
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Ccdc51 | ENSMUSG00000025645 |
| rattus_norvegicus | Ccdc51 | ENSRNOG00000020688 |
Protein
Protein identifiers
Mitochondrial potassium channel — Q96ER9 (reviewed: Q96ER9)
Alternative names: Coiled-coil domain-containing protein 51
All UniProt accessions (3): C9JPZ8, C9JSW8, Q96ER9
UniProt curated annotations — full annotation on UniProt →
Function. Pore-forming subunit of the mitochondrial ATP-gated potassium channel (mitoK(ATP)). Together with ATP-binding subunit ABCB8/MITOSUR of the mitoK(ATP) channel, mediates ATP-dependent K(+) currents across the mitochondrial inner membrane. An increase in ATP intracellular levels closes the channel, inhibiting K(+) transport, whereas a decrease in ATP levels enhances K(+) uptake in the mitochondrial matrix. May contribute to the homeostatic control of cellular metabolism under stress conditions by regulating the mitochondrial matrix volume.
Subunit / interactions. The mitochondrial potassium channel (mitoK(ATP)) is composed of 4 subunits of CCDC51/MITOK and 4 subunits of ABCB8/MITOSUR. Interacts with MUL1/MAPL.
Subcellular location. Mitochondrion inner membrane Mitochondrion inner membrane.
Tissue specificity. Isoform 1: Widely expressed. Isoform 2: Expression is barely detectable.
Activity regulation. Channel activity inhibited by ATP via ABCB8/MITOSUR subunit.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96ER9-1 | 1 | yes |
| Q96ER9-2 | 2 |
RefSeq proteins (7): NP_001243893, NP_001243894, NP_001243895, NP_001243896, NP_001243897, NP_001243898, NP_078937 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR037660 | CCDC51 | Family |
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) = K(+)(out) (RHEA:29463)
UniProt features (12 total): topological domain 3, transmembrane region 2, transit peptide 1, chain 1, splice variant 1, sequence variant 1, region of interest 1, coiled-coil region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96ER9-F1 | 70.21 | 0.23 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 70
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 129 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GSE45365_NK_CELL_VS_CD11B_DC_UP, GOBP_POTASSIUM_ION_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_SIZE, MODULE_205, GOBP_REGULATION_OF_CELL_SIZE, GOCC_MITOCHONDRIAL_ENVELOPE, RYTTCCTG_ETS2_B, GOBP_CELL_VOLUME_HOMEOSTASIS, ACEVEDO_LIVER_CANCER_UP, GOBP_TRANSMEMBRANE_TRANSPORT, GOCC_POTASSIUM_CHANNEL_COMPLEX, GOCC_ORGANELLE_INNER_MEMBRANE, GOBP_HOMEOSTATIC_PROCESS
GO Biological Process (6): cell volume homeostasis (GO:0006884), potassium ion transmembrane transport (GO:0071805), mitochondrial potassium ion transmembrane transport (GO:0140141), monoatomic ion transport (GO:0006811), potassium ion transport (GO:0006813), monoatomic ion transmembrane transport (GO:0034220)
GO Molecular Function (3): mitochondrial ATP-gated potassium channel activity (GO:0062156), potassium channel activity (GO:0005267), protein binding (GO:0005515)
GO Cellular Component (5): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial ATP-gated potassium channel complex (GO:0062157), membrane (GO:0016020), potassium channel complex (GO:0034705)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of cell size | 1 |
| cellular homeostasis | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| potassium ion transmembrane transport | 1 |
| transport | 1 |
| metal ion transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| potassium channel activity | 1 |
| ATP-gated ion channel activity | 1 |
| ligand-gated monoatomic cation channel activity | 1 |
| monoatomic cation channel activity | 1 |
| potassium ion transmembrane transporter activity | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| potassium channel complex | 1 |
| cellular anatomical structure | 1 |
| cation channel complex | 1 |
Protein interactions and networks
STRING
462 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CCDC51 | ABCB8 | Q9NUT2 | 930 |
| CCDC51 | ZNF541 | Q9H0D2 | 534 |
| CCDC51 | ARHGAP23 | Q9P227 | 508 |
| CCDC51 | KCNA3 | P22001 | 505 |
| CCDC51 | ZNF226 | Q9NYT6 | 480 |
| CCDC51 | P4HA2 | O15460 | 451 |
| CCDC51 | ABCB5 | Q2M3G0 | 437 |
| CCDC51 | APOH | P02749 | 436 |
| CCDC51 | IFT140 | Q96RY7 | 425 |
| CCDC51 | ANXA2 | P07355 | 421 |
| CCDC51 | PARK7 | Q99497 | 416 |
| CCDC51 | AHSG | P02765 | 414 |
| CCDC51 | DSG1 | Q02413 | 411 |
| CCDC51 | HSPA5 | P11021 | 409 |
| CCDC51 | APOA1 | P02647 | 403 |
IntAct
67 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| SCAND1 | CCDC51 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNRNP27 | UBA6 | psi-mi:“MI:0914”(association) | 0.530 |
| CCDC51 | TGM5 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM31 | PSMD11 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM241A | NRP1 | psi-mi:“MI:0914”(association) | 0.530 |
| IL1R2 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| ABCB8 | CCDC51 | psi-mi:“MI:0915”(physical association) | 0.520 |
| MAEA | HTRA2 | psi-mi:“MI:0914”(association) | 0.510 |
| WDFY2 | U2SURP | psi-mi:“MI:0914”(association) | 0.350 |
| PCDH20 | psi-mi:“MI:0914”(association) | 0.350 | |
| IL1R2 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| PTPRN | SGSM2 | psi-mi:“MI:0914”(association) | 0.350 |
| CEACAM21 | MET | psi-mi:“MI:0914”(association) | 0.350 |
| COQ9 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.350 |
| COQ9 | ACOT7 | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| rep | CEBPZOS | psi-mi:“MI:0914”(association) | 0.350 |
| CMTM5 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| CACNG1 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| C11orf87 | KLRG2 | psi-mi:“MI:0914”(association) | 0.350 |
| IL7R | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| MPL | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (129): CCDC51 (Affinity Capture-RNA), CCDC51 (Affinity Capture-RNA), CCDC51 (Affinity Capture-MS), JUP (Affinity Capture-MS), NEFH (Affinity Capture-MS), TGM1 (Affinity Capture-MS), IGHG1 (Affinity Capture-MS), ARG1 (Affinity Capture-MS), TGM3 (Affinity Capture-MS), POF1B (Affinity Capture-MS), FABP5 (Affinity Capture-MS), GM2A (Affinity Capture-MS), CPA4 (Affinity Capture-MS), PKP1 (Affinity Capture-MS), CDSN (Affinity Capture-MS)
ESM2 similar proteins: A0PJW6, A1L1J9, A4FV45, A8MXQ7, F1MX48, O00411, P70606, Q05B52, Q05B66, Q0VCA3, Q16611, Q1JQC5, Q1L9A2, Q2VPK5, Q3B8B2, Q3SX05, Q3SYU1, Q3TYL0, Q3URS9, Q4R5Q4, Q505D7, Q5E9Q3, Q5PPN7, Q5R6Z1, Q5RAS8, Q5RJV0, Q5T1A1, Q641S2, Q643R3, Q66LN0, Q6NUQ4, Q6NVG1, Q6P6S4, Q86VI3, Q8BKF1, Q8BWM0, Q8C3X8, Q8N0W3, Q92843, Q92952
Diamond homologs: Q3URS9, Q5E9Q3, Q5PPN7, Q96ER9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
89 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 69 |
| Likely benign | 2 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
687 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:48433163:CCTC:C | acceptor_gain | 1.0000 |
| 3:48433164:CTC:C | acceptor_gain | 1.0000 |
| 3:48433164:CTCC:C | acceptor_gain | 1.0000 |
| 3:48433165:TCCT:T | acceptor_gain | 1.0000 |
| 3:48433165:TCCTG:T | acceptor_loss | 1.0000 |
| 3:48433166:CCTG:C | acceptor_loss | 1.0000 |
| 3:48433167:C:CA | acceptor_loss | 1.0000 |
| 3:48433167:C:CC | acceptor_gain | 1.0000 |
| 3:48433701:GCCTA:G | donor_loss | 1.0000 |
| 3:48433702:CCTA:C | donor_loss | 1.0000 |
| 3:48433703:CTACC:C | donor_loss | 1.0000 |
| 3:48433704:TACCT:T | donor_loss | 1.0000 |
| 3:48433705:AC:A | donor_loss | 1.0000 |
| 3:48433706:C:A | donor_loss | 1.0000 |
| 3:48433868:CAGC:C | acceptor_gain | 1.0000 |
| 3:48433869:AGCC:A | acceptor_loss | 1.0000 |
| 3:48433870:GCCT:G | acceptor_loss | 1.0000 |
| 3:48433872:C:CC | acceptor_gain | 1.0000 |
| 3:48433873:T:G | acceptor_loss | 1.0000 |
| 3:48440310:AAGGT:A | donor_loss | 1.0000 |
| 3:48440311:AGGT:A | donor_loss | 1.0000 |
| 3:48440312:GGTA:G | donor_loss | 1.0000 |
| 3:48440313:G:GG | donor_gain | 1.0000 |
| 3:48440313:GTAA:G | donor_loss | 1.0000 |
| 3:48440314:T:G | donor_loss | 1.0000 |
| 3:48440455:CGAGG:C | donor_loss | 1.0000 |
| 3:48440456:GAGGT:G | donor_loss | 1.0000 |
| 3:48433162:TCCTC:T | acceptor_gain | 0.9900 |
| 3:48433163:CCTCC:C | acceptor_gain | 0.9900 |
| 3:48433165:TC:T | acceptor_gain | 0.9900 |
AlphaMissense
2651 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:48433107:G:C | F179L | 0.997 |
| 3:48433107:G:T | F179L | 0.997 |
| 3:48433109:A:G | F179L | 0.997 |
| 3:48433024:C:T | G207D | 0.994 |
| 3:48433063:C:G | R194P | 0.994 |
| 3:48433732:G:T | A151D | 0.993 |
| 3:48433871:C:G | A105P | 0.993 |
| 3:48432991:C:T | G218D | 0.992 |
| 3:48433000:C:T | G215D | 0.992 |
| 3:48433037:A:G | W203R | 0.991 |
| 3:48433037:A:T | W203R | 0.991 |
| 3:48433077:A:C | S189R | 0.991 |
| 3:48433077:A:T | S189R | 0.991 |
| 3:48433079:T:G | S189R | 0.991 |
| 3:48433108:A:C | F179C | 0.990 |
| 3:48433055:C:G | A197P | 0.989 |
| 3:48433084:C:G | R187P | 0.989 |
| 3:48433091:C:G | A185P | 0.989 |
| 3:48434837:C:G | A98P | 0.989 |
| 3:48432955:A:G | L230P | 0.988 |
| 3:48433041:C:A | K201N | 0.988 |
| 3:48433041:C:G | K201N | 0.988 |
| 3:48433741:A:G | L148S | 0.988 |
| 3:48433117:C:G | R176P | 0.987 |
| 3:48433108:A:G | F179S | 0.986 |
| 3:48433099:A:G | F182S | 0.985 |
| 3:48433735:A:G | L150P | 0.985 |
| 3:48433744:T:C | Y147C | 0.985 |
| 3:48433009:G:T | A212D | 0.984 |
| 3:48433012:C:T | G211E | 0.984 |
dbSNP variants (sampled 300 via entrez): RS1000190732 (3:48447040 C>A,T), RS1000260863 (3:48441221 T>C), RS1000335407 (3:48441432 C>T), RS1000435962 (3:48435782 A>G), RS1000591725 (3:48442585 G>A,T), RS1000666637 (3:48442715 G>C), RS1000824087 (3:48437140 C>G,T), RS1000890043 (3:48435360 T>C), RS1001453941 (3:48438988 C>T), RS1001765642 (3:48432443 G>A,C), RS1001941670 (3:48443348 G>C), RS1002163260 (3:48448038 T>C), RS1002334913 (3:48443957 C>G,T), RS1002381045 (3:48442991 G>C,T), RS1002428878 (3:48437703 C>G)
Disease associations
OMIM: gene MIM:618585 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): inherited retinal dystrophy (MONDO:0019118)
Orphanet (1): OBSOLETE: Inherited retinal disorder (Orphanet:71862)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000556 | Retinal dystrophy |
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004131_23 | Inflammatory bowel disease | 1.000000e-33 |
| GCST004132_17 | Crohn’s disease | 3.000000e-23 |
| GCST004133_11 | Ulcerative colitis | 8.000000e-20 |
| GCST010698_80 | Subcortical volume (min-P) | 3.000000e-24 |
| GCST010699_110 | Brain morphology (min-P) | 4.000000e-08 |
| GCST010701_52 | Cortical surface area (MOSTest) | 1.000000e-16 |
| GCST010702_36 | Subcortical volume (MOSTest) | 1.000000e-10 |
| GCST010703_262 | Brain morphology (MOSTest) | 2.000000e-13 |
| GCST90002402_307 | Platelet count | 1.000000e-13 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
| EFO:0004309 | platelet count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D058499 | Retinal Dystrophies | C11.768.585.658 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cisplatin | affects cotreatment, increases expression, decreases expression | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Benzo(a)pyrene | increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, decreases reaction, increases abundance | 2 |
| aristolochic acid I | increases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | decreases expression | 1 |
| abrine | decreases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | decreases expression, decreases reaction | 1 |
| bisphenol S | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Adenine | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Vehicle Emissions | decreases expression, decreases reaction | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Colchicine | decreases expression | 1 |
| Coumestrol | increases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Etoposide | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Hydroxyurea | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Rotenone | increases expression | 1 |
| Thiram | decreases expression | 1 |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_SH20 | HAP1 CCDC51 (-) 1 | Cancer cell line | Male |
| CVCL_XM47 | HAP1 CCDC51 (-) 2 | Cancer cell line | Male |
| CVCL_XM48 | HAP1 CCDC51 (-) 3 | Cancer cell line | Male |
| CVCL_XM49 | HAP1 CCDC51 (-) 4 | Cancer cell line | Male |
| CVCL_XM50 | HAP1 CCDC51 (-) 5 | Cancer cell line | Male |
Clinical trials (associated diseases)
39 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT04855045 | PHASE2/PHASE3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | PHASE1/PHASE2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | PHASE1/PHASE2 | RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | EARLY_PHASE1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
| NCT03592017 | Not specified | COMPLETED | Performance of Long-wavelength Autofluorescence Imaging |
| NCT03662386 | Not specified | TERMINATED | Prospective Analysis of Genotype-phenotype Correlations Observed in a Large Cohort of Patients With Hereditary Retinal Dystrophies - GEPHIRD |
| NCT03691168 | Not specified | UNKNOWN | Multi-center Observation of the Natural Course of Inherited Retinal Dystrophies |
| NCT03843840 | Not specified | COMPLETED | Dual Wavelength OCT |
| NCT03853252 | Not specified | COMPLETED | iPS Cells of Patients for Models of Retinal Dystrophies |
| NCT05130385 | Not specified | UNKNOWN | High Resolution Optical Coherence Tomography |
| NCT05294978 | Not specified | RECRUITING | EyeConic: Qualification for Cone-Optogenetics |
| NCT05573984 | Not specified | ACTIVE_NOT_RECRUITING | Natural History of PRPF31 Mutation-Associated Retinal Dystrophy |
| NCT05793515 | Not specified | COMPLETED | Mechanisms of Inherited Retinal Dystrophies Using Whole Genome Sequencing and in Vitro and in Vivo Models |
| NCT05820100 | Not specified | COMPLETED | Observational Study to Assess the Reliability and Validity of the MLYMT and MLSDT |
| NCT05976139 | Not specified | RECRUITING | Micropulsed Laser in Patients With Macular Oedema in Retinal Dystrophies |
| NCT06162585 | Not specified | ACTIVE_NOT_RECRUITING | Non-Interventional Long Term Follow-up Study of Participants Previously Enrolled in the RESTORE Study |
| NCT06177977 | Not specified | RECRUITING | SS-HH-OCT as a Novel Diagnostic Modality for Early-Onset Retinal Dystrophies (EORDs) |
| NCT06375239 | Not specified | RECRUITING | Observational Study to Assess Endpoint Operational Feasibility & Measurement Properties in Patients with Retinal Degeneration |
| NCT06908161 | Not specified | NOT_YET_RECRUITING | Functional Assessments in Vision Impairment |
| NCT07085533 | Not specified | RECRUITING | Natural History Study of Inherited Retinal Diseases |
| NCT07502664 | Not specified | RECRUITING | Development and Evaluation of Functional Visual Field and Navigation Endpoints in Moderate to Profound Inherited Retinal Disease (DEFINE-IRD) |
| NCT07529041 | Not specified | ENROLLING_BY_INVITATION | Real-time Acoustic Biofeedback for Enhancing Fixation Stability: A Proof-of-concept Study to Improve Ophthalmic Imaging Diagnostic Quality |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.