CCDC54-AS1

Summary

CCDC54-AS1 (CCDC54 antisense RNA 1, HGNC:56107) is a long non-coding RNA gene on chromosome 3q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56107
Approved symbol	CCDC54-AS1
Name	CCDC54 antisense RNA 1
Location	3q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239828
Ensembl biotype	lncRNA
Entrez	101929579
RNAcentral	URS00007E4DE2 — lncRNA, 486 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000496943, ENST00000593837, ENST00000594608, ENST00000595232, ENST00000596305, ENST00000597154, ENST00000597514, ENST00000599131, ENST00000599431, ENST00000601383, ENST00000658011, ENST00000687050, ENST00000689746, ENST00000692431, ENST00000700973, ENST00000716822, ENST00000716823, ENST00000716824, ENST00000716825, ENST00000716826

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000496943 — 2 exons

Exon	Start	End
ENSE00001835468	107272611	107272760
ENSE00001893666	107322620	107322764

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 94.83.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	94.83	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.44	gold quality
placenta	UBERON:0001987	76.65	gold quality
right ovary	UBERON:0002118	73.13	gold quality
left ovary	UBERON:0002119	72.70	gold quality
ovary	UBERON:0000992	72.24	gold quality
adrenal tissue	UBERON:0018303	72.08	gold quality
right testis	UBERON:0004534	71.76	gold quality
stromal cell of endometrium	CL:0002255	71.47	gold quality
superior frontal gyrus	UBERON:0002661	71.42	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	70.94	gold quality
bone marrow cell	CL:0002092	70.71	silver quality
testis	UBERON:0000473	70.17	gold quality
left testis	UBERON:0004533	69.96	gold quality
Brodmann (1909) area 9	UBERON:0013540	69.01	gold quality
primary visual cortex	UBERON:0002436	68.80	gold quality
right frontal lobe	UBERON:0002810	68.62	gold quality
Ammon’s horn	UBERON:0001954	68.10	gold quality
substantia nigra	UBERON:0002038	67.79	gold quality
putamen	UBERON:0001874	67.74	gold quality
colonic epithelium	UBERON:0000397	67.72	silver quality
frontal cortex	UBERON:0001870	67.48	gold quality
cortical plate	UBERON:0005343	67.28	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	67.13	gold quality
cerebral cortex	UBERON:0000956	67.05	gold quality
calcaneal tendon	UBERON:0003701	66.97	gold quality
caudate nucleus	UBERON:0001873	66.82	gold quality
endometrium	UBERON:0001295	66.73	gold quality
ganglionic eminence	UBERON:0004023	66.47	gold quality
prefrontal cortex	UBERON:0000451	66.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.