CCDC88C-DT

Summary

CCDC88C-DT (CCDC88C divergent transcript, HGNC:55438) is a long non-coding RNA gene on chromosome 14q32.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55438
Approved symbol	CCDC88C-DT
Name	CCDC88C divergent transcript
Location	14q32.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258798
Ensembl biotype	lncRNA
Entrez	105370625
RNAcentral	URS00026A1B22 — lncRNA, 556 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000557524

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000557524 — 2 exons

Exon	Start	End
ENSE00004115608	91418171	91418340
ENSE00004115609	91420949	91421239

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 74.47.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	74.47	gold quality
muscle tissue	UBERON:0002385	72.66	gold quality
lymph node	UBERON:0000029	62.92	gold quality
monocyte	CL:0000576	62.59	gold quality
ectocervix	UBERON:0012249	61.44	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.12	gold quality
tonsil	UBERON:0002372	59.72	gold quality
vermiform appendix	UBERON:0001154	59.58	gold quality
islet of Langerhans	UBERON:0000006	59.06	gold quality
blood	UBERON:0000178	58.01	gold quality
heart left ventricle	UBERON:0002084	57.42	gold quality
kidney	UBERON:0002113	57.34	gold quality
muscle of leg	UBERON:0001383	55.80	gold quality
gastrocnemius	UBERON:0001388	55.57	gold quality
body of pancreas	UBERON:0001150	55.33	gold quality
tibial artery	UBERON:0007610	54.99	gold quality
liver	UBERON:0002107	54.84	gold quality
right adrenal gland	UBERON:0001233	54.83	gold quality
right adrenal gland cortex	UBERON:0035827	54.83	gold quality
granulocyte	CL:0000094	54.72	gold quality
adult mammalian kidney	UBERON:0000082	54.13	gold quality
body of stomach	UBERON:0001161	54.07	gold quality
right lobe of liver	UBERON:0001114	54.03	gold quality
prefrontal cortex	UBERON:0000451	53.68	gold quality
heart	UBERON:0000948	53.48	gold quality
fallopian tube	UBERON:0003889	53.43	gold quality
stomach	UBERON:0000945	53.42	gold quality
left adrenal gland	UBERON:0001234	53.24	gold quality
nucleus accumbens	UBERON:0001882	53.24	gold quality
left adrenal gland cortex	UBERON:0035825	53.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.