CCDC90B-AS1

Summary

CCDC90B-AS1 (CCDC90B antisense RNA 1, HGNC:55505) is a long non-coding RNA gene on chromosome 11q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55505
Approved symbol	CCDC90B-AS1
Name	CCDC90B antisense RNA 1
Location	11q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255234
Ensembl biotype	lncRNA
Entrez	120883614
RNAcentral	URS00026A1F6D — lncRNA, 5407 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000530045, ENST00000534572, ENST00000671128, ENST00000812270, ENST00000812271

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000530045 — 5 exons

Exon	Start	End
ENSE00002144851	83419536	83419693
ENSE00002160276	83286128	83286547
ENSE00002172120	83340467	83340521
ENSE00002192085	83301779	83301840
ENSE00002194047	83421569	83423516

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 87.26.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	87.26	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.34	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.28	gold quality
sural nerve	UBERON:0015488	64.82	gold quality
skeletal muscle tissue	UBERON:0001134	64.25	gold quality
body of pancreas	UBERON:0001150	62.92	gold quality
right testis	UBERON:0004534	62.70	gold quality
testis	UBERON:0000473	62.32	gold quality
bone marrow	UBERON:0002371	62.27	gold quality
left testis	UBERON:0004533	62.16	gold quality
tonsil	UBERON:0002372	60.26	silver quality
cortical plate	UBERON:0005343	60.15	silver quality
pancreas	UBERON:0001264	59.84	gold quality
ventricular zone	UBERON:0003053	58.81	silver quality
ganglionic eminence	UBERON:0004023	57.54	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.63	silver quality
fundus of stomach	UBERON:0001160	55.64	gold quality
monocyte	CL:0000576	55.20	gold quality
adrenal tissue	UBERON:0018303	54.86	gold quality
blood	UBERON:0000178	54.63	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.49	gold quality
thyroid gland	UBERON:0002046	54.39	gold quality
smooth muscle tissue	UBERON:0001135	54.17	gold quality
right lobe of thyroid gland	UBERON:0001119	54.13	gold quality
left lobe of thyroid gland	UBERON:0001120	54.01	gold quality
pituitary gland	UBERON:0000007	53.41	gold quality
adenohypophysis	UBERON:0002196	53.08	gold quality
body of stomach	UBERON:0001161	53.06	gold quality
kidney	UBERON:0002113	52.99	gold quality
stomach	UBERON:0000945	52.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.88

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.