CCL3-AS1

Summary

CCL3-AS1 (CCL3 antisense RNA 1, HGNC:55229) is a long non-coding RNA gene on chromosome 17q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55229
Approved symbol	CCL3-AS1
Name	CCL3 antisense RNA 1
Location	17q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000277089
Ensembl biotype	lncRNA
Entrez	102724850
RNAcentral	URS00026A283F — lncRNA, 646 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000610845, ENST00000615750, ENST00000616926, ENST00000620056, ENST00000818634

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000610845 — 5 exons

Exon	Start	End
ENSE00003714708	36076710	36076802
ENSE00003728035	36073656	36073671
ENSE00003740320	36074636	36074848
ENSE00003748167	36081496	36081512
ENSE00003754237	36072878	36072948

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 90.18.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	90.18	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.82	gold quality
bone marrow	UBERON:0002371	79.80	gold quality
granulocyte	CL:0000094	76.05	gold quality
colonic epithelium	UBERON:0000397	70.49	silver quality
blood	UBERON:0000178	70.10	gold quality
tonsil	UBERON:0002372	68.41	gold quality
ganglionic eminence	UBERON:0004023	67.64	gold quality
lymph node	UBERON:0000029	66.04	gold quality
right testis	UBERON:0004534	65.99	gold quality
testis	UBERON:0000473	65.94	gold quality
left testis	UBERON:0004533	65.89	gold quality
cortex of kidney	UBERON:0001225	65.36	gold quality
muscle tissue	UBERON:0002385	64.81	gold quality
leukocyte	CL:0000738	64.79	gold quality
upper lobe of left lung	UBERON:0008952	64.46	gold quality
duodenum	UBERON:0002114	64.05	gold quality
lung	UBERON:0002048	63.76	gold quality
skeletal muscle tissue	UBERON:0001134	63.43	silver quality
monocyte	CL:0000576	62.98	gold quality
cortical plate	UBERON:0005343	62.90	gold quality
corpus callosum	UBERON:0002336	62.62	gold quality
mucosa of transverse colon	UBERON:0004991	61.97	gold quality
vermiform appendix	UBERON:0001154	61.72	gold quality
smooth muscle tissue	UBERON:0001135	61.71	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.62	gold quality
spleen	UBERON:0002106	61.45	gold quality
gall bladder	UBERON:0002110	60.92	gold quality
liver	UBERON:0002107	60.81	gold quality
rectum	UBERON:0001052	58.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.