CCNC

gene
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Also known as CycC

Summary

CCNC (cyclin C, HGNC:1581) is a protein-coding gene on chromosome 6q16.2, encoding Cyclin-C (P24863). Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. It is a selective cancer dependency (DepMap: 27.1% of cell lines).

The protein encoded by this gene is a member of the cyclin family of proteins. The encoded protein interacts with cyclin-dependent kinase 8 and induces the phophorylation of the carboxy-terminal domain of the large subunit of RNA polymerase II. The level of mRNAs for this gene peaks in the G1 phase of the cell cycle. Two transcript variants encoding different isoforms have been found for this gene.

Source: NCBI Gene 892 — RefSeq curated summary.

At a glance

  • GWAS associations: 4
  • Clinical variants (ClinVar): 41 total — 1 pathogenic, 1 likely-pathogenic
  • Phenotypes (HPO): 1
  • Druggable target: yes — 4 molecules with ChEMBL bioactivity
  • Cancer dependency (DepMap): dependent in 27.1% of screened cell lines
  • MANE Select transcript: NM_005190

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1581
Approved symbolCCNC
Namecyclin C
Location6q16.2
Locus typegene with protein product
StatusApproved
AliasesCycC
Ensembl geneENSG00000112237
Ensembl biotypeprotein_coding
OMIM123838
Entrez892

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 22 protein_coding, 4 retained_intron, 3 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined

ENST00000326298, ENST00000369217, ENST00000369220, ENST00000482541, ENST00000484049, ENST00000486428, ENST00000518714, ENST00000519617, ENST00000520371, ENST00000520429, ENST00000521017, ENST00000523310, ENST00000523541, ENST00000523639, ENST00000523799, ENST00000523961, ENST00000523985, ENST00000524049, ENST00000627680, ENST00000882415, ENST00000882416, ENST00000882417, ENST00000882418, ENST00000882419, ENST00000882420, ENST00000930284, ENST00000930285, ENST00000930286, ENST00000962620, ENST00000962621

RefSeq mRNA: 3 — MANE Select: NM_005190 NM_001013399, NM_001363537, NM_005190

CCDS: CCDS34502, CCDS47461, CCDS87420

Canonical transcript exons

ENST00000520429 — 12 exons

ExonStartEnd
ENSE000021203009956849699568660
ENSE000035142899955849799558548
ENSE000035239259954950899549575
ENSE000035779089955021899550309
ENSE000035851349955099399551028
ENSE000035909149954639599546474
ENSE000036001829954238799543609
ENSE000036563379956136799561436
ENSE000036818039955184099551895
ENSE000036835559956159799561681
ENSE000036893639954511299545230
ENSE000036905299956284299562948

Expression profiles

Bgee: expression breadth ubiquitous, 294 present calls, max score 98.84.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.7780 / max 354.5567, expressed in 1816 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
7481519.67771805
7481415.60051773
748164.02501531
2041130.4748262

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
parotid glandUBERON:000183198.84gold quality
oral cavityUBERON:000016798.24gold quality
corpus epididymisUBERON:000435998.02gold quality
jejunal mucosaUBERON:000039997.64gold quality
islet of LangerhansUBERON:000000697.22gold quality
nasal cavity epitheliumUBERON:000538497.21gold quality
adrenal tissueUBERON:001830397.04gold quality
mucosa of sigmoid colonUBERON:000499396.93gold quality
upper leg skinUBERON:000426296.91gold quality
caput epididymisUBERON:000435896.86gold quality
nasal cavity mucosaUBERON:000182696.85gold quality
amniotic fluidUBERON:000017396.73gold quality
colonic mucosaUBERON:000031796.58gold quality
pancreasUBERON:000126496.55gold quality
body of pancreasUBERON:000115096.53gold quality
type B pancreatic cellCL:000016996.51gold quality
epithelium of nasopharynxUBERON:000195196.36gold quality
nephron tubuleUBERON:000123196.29gold quality
mammalian vulvaUBERON:000099796.26gold quality
penisUBERON:000098996.22gold quality
hair follicleUBERON:000207396.08gold quality
choroid plexus epitheliumUBERON:000391196.08gold quality
pigmented layer of retinaUBERON:000178296.01gold quality
tongue squamous epitheliumUBERON:000691995.95gold quality
upper arm skinUBERON:000426395.94gold quality
saliva-secreting glandUBERON:000104495.87gold quality
seminal vesicleUBERON:000099895.82gold quality
esophagus squamous epitheliumUBERON:000692095.78gold quality
gall bladderUBERON:000211095.76gold quality
pharyngeal mucosaUBERON:000035595.75gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-MTAB-7008no426.88
E-CURD-89no285.89
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

1 targets.

TargetRegulation
HES1Activation

Upstream regulators (CollecTRI, top): CREB1, STOX1, YBX1

miRNA regulators (miRDB)

108 targeting CCNC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-656-3P100.0072.152788
HSA-MIR-3120-5P100.0065.56965
HSA-MIR-340-5P100.0072.504437
HSA-MIR-548AW99.9972.573559
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-366299.9973.825684
HSA-MIR-318599.9968.121959
HSA-MIR-428299.9975.366408
HSA-MIR-477599.9875.006394
HSA-MIR-27A-3P99.9872.132955
HSA-MIR-27B-3P99.9872.132955
HSA-MIR-998599.9872.112939
HSA-MIR-569699.9872.364487
HSA-MIR-32-5P99.9875.211964
HSA-MIR-92A-3P99.9875.211960
HSA-MIR-92B-3P99.9875.251955
HSA-MIR-25-3P99.9874.601817
HSA-MIR-363-3P99.9874.721821
HSA-MIR-367-3P99.9874.831819
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-1250-3P99.9670.044038
HSA-MIR-365899.9673.874379
HSA-MIR-590-3P99.9674.346478
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-128-3P99.9571.172484
HSA-MIR-216A-3P99.9571.192505
HSA-MIR-548J-3P99.9472.614881
HSA-MIR-335-3P99.9373.364958

Functional genomics

DepMap (CRISPR cell-line fitness): dependent in 27.1% of screened cell lines.

Literature-anchored findings (GeneRIF, showing 18)

  • The present observations suggest different cellular functions of cyclin C in neurons and astrocytes in alzheimer’s disease. (PMID:12600719)
  • A cellular pool of cyclin C combines with cdk3 to stimulate pRb phosphorylation at S807/811 during the G0/G1 transition, and this phosphorylation is required for cells to exit G0 efficiently. (PMID:15084261)
  • Identification of multiple 1alpha,25(OH)2D3 response elements in the cyclin C promoter. (PMID:15863722)
  • Physical chromosome mapping of the deleted region of chromosome 6 suggests that CCNC is a candidate tumor suppressor gene. (PMID:17089020)
  • C2 isoform may play a presently unexplored and important role in mammalian testis and probably this isoform is the one that is mainly implicated in cell cycle regulation. (PMID:17385550)
  • Data suggests that the primary regulation of Cyclin C by all-trans RA and Forskolin mediates some of the cell cycle control actions of these compounds. (PMID:19683536)
  • Studies establish cyclin C as a critical regulator of the G(0)/G(1) transition of human HSPCs and suggest that modulating cyclin C levels may be useful for HSC expansion and more efficient engraftment. (PMID:19967789)
  • 2.2-A crystal structure of CDK8/CycC in complex with sorafenib; CDK8 structure reveals a unique CycC recognition helix that explains the specificity of the CDK8/CycC pair and discrimination among the highly promiscuous binding in the CDK/cyclin family (PMID:21806996)
  • Silencing beta-catenin gene may induce changes of cell cycle and in cyclin B1 and cyclin C protein expression. (PMID:22024040)
  • analysis of the structure-kinetic relationship of the cyclin-dependent kinase 8 (CDK8)/cyclin C (CycC) complex (PMID:23630251)
  • Cancer-mediated CDK8 point mutations (D173A and D189N) change the binding pattern of cdk8 to its partner, CycC. (PMID:24754906)
  • cyclin-C-CDK complexes phosphorylate the Notch1 intracellular domain (ICN1) and promote ICN1 degradation (PMID:25344755)
  • results suggest that CCNC temporarily protects SRC-2 against degradation and this event is involved in the transcriptional regulation of SRC-2 cell cycle target genes. (PMID:25986860)
  • our results suggest that mTORC1 activation in NAFLD and insulin resistance results in down-regulation of the CDK8-CycC complex and elevation of lipogenic protein expression. (PMID:26042770)
  • Oncogenic exon 2 mutations in Mediator subunit MED12 disrupt allosteric activation of cyclin C-CDK8/19. (PMID:29440396)
  • cyclin C binding stimulates the reduction of low-GTPase activity Drp1 oligomers into dimers capable of producing high-GTPase activity filaments. (PMID:30516433)
  • Genome-wide CRISPR screens reveal cyclin C as synthetic survival target of BRCA2. (PMID:34197614)
  • Loss of Cyclin C or CDK8 provides ATR inhibitor resistance by suppressing transcription-associated replication stress. (PMID:34329458)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioccncENSDARG00000009607
mus_musculusCcncENSMUSG00000028252
rattus_norvegicusCcncENSRNOG00000007719

Protein

Protein identifiers

Cyclin-CP24863 (reviewed: P24863)

Alternative names: SRB11 homolog

All UniProt accessions (11): P24863, E5RFK5, E5RFX8, E5RHL8, E5RI39, E5RIH8, G5E954, H0YBQ5, J3KP90, Q5JV82, Q7Z4L3

UniProt curated annotations — full annotation on UniProt →

Function. Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex.

Subunit / interactions. Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The cylin/CDK pair formed by CCNC/CDK8 also associates with the large subunit of RNA polymerase II.

Subcellular location. Nucleus.

Tissue specificity. Highest levels in pancreas. High levels in heart, liver, skeletal muscle and kidney. Low levels in brain.

Similarity. Belongs to the cyclin family. Cyclin C subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
P24863-11yes
P24863-22

RefSeq proteins (3): NP_001013417, NP_001350466, NP_005181* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR006671Cyclin_NDomain
IPR013763Cyclin-like_domDomain
IPR031658Cyclin_C_2Domain
IPR036915Cyclin-like_sfHomologous_superfamily
IPR043198Cyclin/Ssn8Family

Pfam: PF00134, PF16899

UniProt features (28 total): helix 15, turn 6, chain 1, domain 1, strand 1, region of interest 1, compositionally biased region 1, modified residue 1, splice variant 1

Structure

Experimental structures (PDB)

36 structures, top 30 by resolution.

PDBMethodResolution (Å)
5XS2X-RAY DIFFRACTION2.04
4F6UX-RAY DIFFRACTION2.1
9H8SX-RAY DIFFRACTION2.16
5ICPX-RAY DIFFRACTION2.18
6R3SX-RAY DIFFRACTION2.19
6Y0AX-RAY DIFFRACTION2.19
3RGFX-RAY DIFFRACTION2.2
4F7SX-RAY DIFFRACTION2.2
5CEIX-RAY DIFFRACTION2.24
5IDNX-RAY DIFFRACTION2.26
5XQXX-RAY DIFFRACTION2.3
5HNBX-RAY DIFFRACTION2.35
5FGKX-RAY DIFFRACTION2.36
5HBEX-RAY DIFFRACTION2.38
4F6WX-RAY DIFFRACTION2.39
5HVYX-RAY DIFFRACTION2.39
4CRLX-RAY DIFFRACTION2.4
6T41X-RAY DIFFRACTION2.45
6QTJX-RAY DIFFRACTION2.48
5HBHX-RAY DIFFRACTION2.5
9H8CX-RAY DIFFRACTION2.57
4F6SX-RAY DIFFRACTION2.6
4F7JX-RAY DIFFRACTION2.6
5I5ZX-RAY DIFFRACTION2.6
5BNJX-RAY DIFFRACTION2.64
4F7NX-RAY DIFFRACTION2.65
5IDPX-RAY DIFFRACTION2.65
4G6LX-RAY DIFFRACTION2.7
6QTGX-RAY DIFFRACTION2.7
6TPAX-RAY DIFFRACTION2.8

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P24863-F192.050.88

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1): 275

Function

Pathways and Gene Ontology

Reactome pathways

34 pathways

IDPathway
R-HSA-1989781PPARA activates gene expression
R-HSA-2122947NOTCH1 Intracellular Domain Regulates Transcription
R-HSA-212436Generic Transcription Pathway
R-HSA-2173796SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-HSA-2644606Constitutive Signaling by NOTCH1 PEST Domain Mutants
R-HSA-2894862Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
R-HSA-381340Transcriptional regulation of white adipocyte differentiation
R-HSA-9833110RSV-host interactions
R-HSA-9841922MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis
R-HSA-1266738Developmental Biology
R-HSA-1430728Metabolism
R-HSA-157118Signaling by NOTCH
R-HSA-162582Signal Transduction
R-HSA-1643685Disease
R-HSA-170834Signaling by TGF-beta Receptor Complex
R-HSA-1980143Signaling by NOTCH1
R-HSA-212165Epigenetic regulation of gene expression
R-HSA-2173793Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
R-HSA-2644602Signaling by NOTCH1 PEST Domain Mutants in Cancer
R-HSA-2644603Signaling by NOTCH1 in Cancer
R-HSA-2894858Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer
R-HSA-400206Regulation of lipid metabolism by PPARalpha
R-HSA-556833Metabolism of lipids
R-HSA-5663202Diseases of signal transduction by growth factor receptors and second messengers
R-HSA-5663205Infectious disease
R-HSA-73857RNA Polymerase II Transcription
R-HSA-74160Gene expression (Transcription)
R-HSA-9006936Signaling by TGFB family members
R-HSA-9818564Epigenetic regulation of gene expression by MLL3 and MLL4 complexes
R-HSA-9820952Respiratory Syncytial Virus Infection Pathway

MSigDB gene sets: 234 (showing top): REACTOME_TRANSCRIPTIONAL_REGULATION_OF_WHITE_ADIPOCYTE_DIFFERENTIATION, KALMA_E2F1_TARGETS, REACTOME_SIGNALING_BY_NOTCH, HORIUCHI_WTAP_TARGETS_DN, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, ENK_UV_RESPONSE_KERATINOCYTE_UP, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE, KYNG_DNA_DAMAGE_DN, BROWNE_HCMV_INFECTION_16HR_UP, GOBP_NEGATIVE_REGULATION_OF_NOTCH_SIGNALING_PATHWAY, PUJANA_CHEK2_PCC_NETWORK, CATTTCA_MIR203, MILI_PSEUDOPODIA_HAPTOTAXIS_UP

GO Biological Process (4): G0 to G1 transition (GO:0045023), negative regulation of Notch signaling pathway (GO:0045746), positive regulation of transcription by RNA polymerase II (GO:0045944), regulation of transcription by RNA polymerase II (GO:0006357)

GO Molecular Function (3): cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538), identical protein binding (GO:0042802), protein binding (GO:0005515)

GO Cellular Component (5): cyclin-dependent protein kinase holoenzyme complex (GO:0000307), nucleus (GO:0005634), nucleoplasm (GO:0005654), mediator complex (GO:0016592), CKM complex (GO:1990508)

Reactome top-level categories

Rollup of top-17 pathways:

CategoryPathways
Regulation of lipid metabolism by PPARalpha1
Signaling by NOTCH11
RNA Polymerase II Transcription1
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer1
Signaling by NOTCH1 PEST Domain Mutants in Cancer1
Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer1
Adipogenesis1
Respiratory Syncytial Virus Infection Pathway1
Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes1
Signal Transduction1
Signaling by TGFB family members1
Signaling by NOTCH1
Gene expression (Transcription)1
Signaling by TGF-beta Receptor Complex1
Generic Transcription Pathway1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transcription by RNA polymerase II2
cell cycle process1
Notch signaling pathway1
regulation of Notch signaling pathway1
negative regulation of signal transduction1
regulation of transcription by RNA polymerase II1
positive regulation of DNA-templated transcription1
regulation of DNA-templated transcription1
cyclin-dependent protein serine/threonine kinase activity1
cyclin-dependent protein kinase regulator activity1
protein binding1
binding1
serine/threonine protein kinase complex1
intracellular membrane-bounded organelle1
nuclear lumen1
cellular anatomical structure1
core mediator complex1
nuclear protein-containing complex1
nuclear cyclin-dependent protein kinase holoenzyme complex1

Protein interactions and networks

STRING

2600 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CCNCMED12Q93074999
CCNCCDK8P49336999
CCNCMED13Q9UHV7998
CCNCCDK19Q9BWU1997
CCNCCDK3Q00526995
CCNCMED12LQ86YW9993
CCNCMED13LQ71F56987
CCNCMED6O75586929
CCNCCDK7P50613924
CCNCMED14O60244919
CCNCMED17Q9NVC6917
CCNCMED21Q13503893
CCNCCDK2P24941858
CCNCMED26O95402808
CCNCMED1Q15648771

IntAct

409 interactions, top by confidence:

ABTypeScore
CCNCCDK8psi-mi:“MI:0915”(physical association)0.980
CDK8CCNCpsi-mi:“MI:0915”(physical association)0.980
CDK8CCNCpsi-mi:“MI:0407”(direct interaction)0.980
CCNCCDK8psi-mi:“MI:0407”(direct interaction)0.980
CCNCCDK8psi-mi:“MI:0914”(association)0.980
CCNCCDK8psi-mi:“MI:2364”(proximity)0.980
MED10MED24psi-mi:“MI:0914”(association)0.870
CDK8MED19psi-mi:“MI:2364”(proximity)0.850
CDK8MED19psi-mi:“MI:0914”(association)0.850
CCNCCDK3psi-mi:“MI:0915”(physical association)0.750
CCNCKRT31psi-mi:“MI:0915”(physical association)0.720
KRT31CCNCpsi-mi:“MI:0915”(physical association)0.720
CRXCCNCpsi-mi:“MI:0915”(physical association)0.670
CCNCZNF18psi-mi:“MI:0915”(physical association)0.670
PBXIP1CCNCpsi-mi:“MI:0915”(physical association)0.670
CCNCPNMA5psi-mi:“MI:0915”(physical association)0.670
NMNAT1CCNCpsi-mi:“MI:0915”(physical association)0.670
TRIM39CCNCpsi-mi:“MI:0915”(physical association)0.670

BioGRID (365): CDK8 (Two-hybrid), CRX (Two-hybrid), GOLGA2 (Two-hybrid), KRT13 (Two-hybrid), KRT15 (Two-hybrid), KRT31 (Two-hybrid), MEOX2 (Two-hybrid), MGST3 (Two-hybrid), NEFL (Two-hybrid), ZNF18 (Two-hybrid), TADA3 (Two-hybrid), PUF60 (Two-hybrid), MBIP (Two-hybrid), TRIM39 (Two-hybrid), PBXIP1 (Two-hybrid)

ESM2 similar proteins: A2VEA3, A5PKA5, B1H1E4, B5FXJ6, O15294, O89050, P24863, P39947, P55168, P56558, P61201, P61202, P61203, P79101, P81436, Q05048, Q13888, Q27HV0, Q28F72, Q32NS4, Q3UHD6, Q3ZCK5, Q4KLA0, Q4R9A8, Q4VC33, Q5BJQ6, Q5F398, Q5R532, Q5R8K2, Q5RB35, Q5RKJ1, Q62447, Q6GR10, Q6IQT4, Q6IR75, Q6PFJ9, Q7L5Y9, Q7SXR3, Q8C6G8, Q8CGY8

Diamond homologs: A1C7R6, A3LPX1, A4RD79, F1QMB9, O75909, O88874, O94503, P24863, P25008, P39947, P47821, P55168, P93411, Q0CV29, Q16JA2, Q1EAW8, Q28F72, Q29AI1, Q2GVK1, Q2UDB2, Q3ZCK5, Q4KLA0, Q4WZT9, Q56YF8, Q5A4H9, Q5BBA8, Q62447, Q6BYF8, Q6CAC7, Q6CP20, Q6FJE8, Q75AX7, Q7QB13, Q86KE7, Q9C1M4, Q9FJK6, Q9FJK7, Q9HE63, P51946, Q3ZBL9

SIGNOR signaling

7 interactions.

AEffectBMechanism
CCNC“up-regulates quantity by expression”HES1“transcriptional regulation”
CCNCdown-regulatesNOTCH1phosphorylation
MAML1up-regulatesCCNCrelocalization
CCNCdown-regulatesNOTCHphosphorylation
CCNC“form complex”“CKM complex”binding
CCNC“form complex”CyclinC/CDK19binding
CCNC“form complex”CyclinC/CDK3binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 85 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes622.3×3e-05
Epigenetic regulation by WDR5-containing histone modifying complexes821.3×1e-06
Epigenetic regulation of gene expression by MLL3 and MLL4 complexes620.4×4e-05
Respiratory Syncytial Virus Infection Pathway517.0×4e-04
Adipogenesis616.2×1e-04
RSV-host interactions513.5×1e-03
Epigenetic regulation of gene expression1012.3×1e-06
Regulation of lipid metabolism by PPARalpha512.2×2e-03

GO biological processes:

GO termPartnersFoldFDR
morphogenesis of an epithelium626.1×3e-05
positive regulation of transcription elongation by RNA polymerase II622.9×4e-05
intermediate filament organization721.3×2e-05
RNA polymerase II preinitiation complex assembly517.2×1e-03
epithelial cell differentiation511.1×7e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

41 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic1
Uncertain significance22
Likely benign2
Benign0

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
4682664GRCh37/hg19 6q16.1-16.2(chr6:96096962-100369465)x1Pathogenic
814851GRCh37/hg19 6q16.1-16.2(chr6:98870687-100270433)x1Likely pathogenic

SpliceAI

2111 predictions. Top by Δscore:

VariantEffectΔscore
6:99545144:A:ACdonor_gain1.0000
6:99545145:C:CCdonor_gain1.0000
6:99545230:TCTAG:Tacceptor_loss1.0000
6:99545231:C:CAacceptor_loss1.0000
6:99545231:C:CCacceptor_gain1.0000
6:99551896:C:CCacceptor_gain1.0000
6:99558495:A:ACdonor_gain1.0000
6:99558496:C:CCdonor_gain1.0000
6:99558496:CATA:Cdonor_gain1.0000
6:99561591:TCCTA:Tdonor_loss1.0000
6:99561592:CCTA:Cdonor_loss1.0000
6:99561593:CTAC:Cdonor_loss1.0000
6:99561594:TACC:Tdonor_loss1.0000
6:99561595:A:Tdonor_loss1.0000
6:99561596:CCT:Cdonor_loss1.0000
6:99561677:GATAA:Gacceptor_gain1.0000
6:99561678:ATAA:Aacceptor_gain1.0000
6:99561679:TAA:Tacceptor_gain1.0000
6:99561680:AA:Aacceptor_gain1.0000
6:99561681:ACTAA:Aacceptor_loss1.0000
6:99561682:C:CCacceptor_gain1.0000
6:99561682:C:CGacceptor_loss1.0000
6:99561683:T:Gacceptor_loss1.0000
6:99562836:GTTTA:Gdonor_loss1.0000
6:99562837:TTTA:Tdonor_loss1.0000
6:99562838:TTA:Tdonor_loss1.0000
6:99562841:C:CGdonor_loss1.0000
6:99562863:A:Cdonor_gain1.0000
6:99562866:T:TAdonor_gain1.0000
6:99562867:C:Adonor_gain1.0000

AlphaMissense

1878 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
6:99546470:G:CC201W1.000
6:99551006:A:GL142P1.000
6:99551011:G:CF140L1.000
6:99551011:G:TF140L1.000
6:99551013:A:GF140L1.000
6:99551015:T:AE139V1.000
6:99561373:T:AK96N1.000
6:99561373:T:GK96N1.000
6:99561374:T:AK96I1.000
6:99561375:T:CK96E1.000
6:99561380:G:TA94E1.000
6:99561391:A:CC90W1.000
6:99561392:C:TC90Y1.000
6:99561393:A:GC90R1.000
6:99561608:T:AR71S1.000
6:99561608:T:GR71S1.000
6:99561627:G:TA65D1.000
6:99561628:C:GA65P1.000
6:99561633:G:TA63D1.000
6:99561666:C:TG52D1.000
6:99561667:C:GG52R1.000
6:99562941:A:GW14R1.000
6:99562941:A:TW14R1.000
6:99546427:A:GW216R0.999
6:99546427:A:TW216R0.999
6:99546459:G:TA205D0.999
6:99546468:A:GL202P0.999
6:99546471:C:TC201Y0.999
6:99546472:A:GC201R0.999
6:99549513:G:TA198D0.999

dbSNP variants (sampled 300 via entrez): RS1000272882 (6:99546210 C>A,T), RS1000428503 (6:99555028 G>A), RS1000523735 (6:99559660 A>T), RS1000537592 (6:99568079 C>A), RS1000566570 (6:99549992 A>G), RS1000652243 (6:99567881 C>A), RS1000876217 (6:99564496 A>G), RS1000957856 (6:99559212 T>C), RS1001040696 (6:99552041 T>C), RS1001078298 (6:99542397 G>GA), RS1001354052 (6:99547144 T>C), RS1001593083 (6:99551487 T>G), RS1001881104 (6:99565915 C>T), RS1001922786 (6:99551122 T>C), RS1002031061 (6:99558378 G>A,T)

Disease associations

OMIM: gene MIM:123838 | disease phenotypes: MIM:209850

GenCC curated gene-disease

Mondo (2): autism (MONDO:0005260), CIC-rearranged sarcoma (MONDO:0956989)

Orphanet (0):

HPO phenotypes

1 total (1 of 1 shown, HPO-id order):

HPOTerm
HP:0000717Autism

GWAS associations

4 associations (top):

StudyTraitp-value
GCST007118_1Erectile dysfunction2.000000e-37
GCST010002_330Refractive error2.000000e-15
GCST011494_33Daytime nap3.000000e-10
GCST012419_6Longevity (100 years and older)4.000000e-08

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0007828daytime rest measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
D001321Autistic DisorderF03.625.164.113.500

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (5): CHEMBL2401607 (SINGLE PROTEIN), CHEMBL3038474 (PROTEIN COMPLEX), CHEMBL3883323 (PROTEIN COMPLEX), CHEMBL4888443 (PROTEIN COMPLEX), CHEMBL4888454 (PROTEIN COMPLEX)

Molecules with ChEMBL bioactivity

4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 86,276 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1336SORAFENIB486,060
CHEMBL5199065ISTISOCICLIB221
CHEMBL4076837SENEXIN B1104
CHEMBL4225966SEL-120 FREE BASE191

PharmGKB: 1 entry (VIP=true, CPIC=false)

Binding affinities (BindingDB)

93 measured of 97 human assays (97 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
5-cyclopropyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC500.48 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamideIC500.77 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-fluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamideIC500.827 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.09 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3,7,7-trimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
13-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-fluoroethyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
(7S)-7-cyclohexyl-3-ethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
(7R)-7-cyclohexyl-3-ethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC501.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-chloro-3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamideIC502.41 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-cyclopropyl-3-ethyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC502.65 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxylic acidIC503.01 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethyl-1’-(2,2,2-trifluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamideIC503.14 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
(7S)-7-(oxan-4-yl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC504.46 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamideIC504.58 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamideIC506.1 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
1’-acetylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamideIC507.48 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamideIC508.22 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
(7S)-7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC508.5 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-methoxyethyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5011.5 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5011.9 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethyl-5-(3-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5013.9 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7-methyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5014.4 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethyl-5-(2-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5016.4 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5016.6 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-ethyl-7,7-dimethyl-5-[2-(trifluoromethyl)phenyl]-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5016.7 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
(7R)-7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5019.3 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-3-(2,2,2-trifluoroethyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5019.4 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-5-(4-sulfamoylphenyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acidIC5020.7 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-methoxyethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamideIC5020.9 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-ethenyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5029.5 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7-methyl-7-propan-2-yl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5031.1 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
13-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxylic acidIC5031.4 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
1’-(2,2,2-trifluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamideIC5040.5 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-(3,6-dihydro-2H-pyran-4-yl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5070.5 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-5-(4-sulfamoylphenyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5081.3 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-(3,6-dihydro-2H-pyran-4-yl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acidIC5086.6 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-fluoroethyl)-5-(2-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC5097.3 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-5-phenyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC50107 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-(2-hydroxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC50112 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
1’-(3,3,3-trifluoropropyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamideIC50120 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
5-(3-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamideIC50127 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acidIC50146 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
3-(2-fluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamideIC50148 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors
13-chloro-3,7,7-trimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxamideIC50158 nMUS-10208056: Condensed tricyclic compounds as protein kinase inhibitors

ChEMBL bioactivities

846 potent at pChembl≥5 of 848 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.72IC500.191nMCHEMBL4789125
9.70IC500.2nMCHEMBL4078454
9.58IC500.262nMCHEMBL4789603
9.56IC500.278nMCHEMBL4776812
9.50IC500.314nMCHEMBL4777356
9.47IC500.34nMCHEMBL4083552
9.44IC500.36nMCHEMBL4061525
9.43IC500.37nMCHEMBL5435821
9.40IC500.4nMCHEMBL4096487
9.40IC500.4nMCHEMBL5434183
9.40IC500.4nMCHEMBL5409410
9.39IC500.407nMCHEMBL5752178
9.34IC500.46nMCHEMBL4066819
9.33IC500.47nMCHEMBL4070408
9.33IC500.466nMCHEMBL4780792
9.32IC500.48nMCHEMBL5405004
9.32IC500.48nMCHEMBL4792305
9.31IC500.49nMCHEMBL5414359
9.27IC500.54nMCHEMBL4091527
9.26IC500.55nMCHEMBL4083552
9.24IC500.57nMCHEMBL4086487
9.23IC500.59nMCHEMBL4061525
9.22IC500.6nMCHEMBL4074204
9.20IC500.63nMCHEMBL5416117
9.19IC500.65nMCHEMBL4082469
9.15IC500.7nMCHEMBL498385
9.15IC500.71nMCHEMBL3828221
9.15IC500.71nMCHEMBL5402477
9.15IC500.7nMCHEMBL5396725
9.11IC500.77nMCHEMBL4070408
9.11IC500.77nMCHEMBL4777356
9.10Kd0.7943nMCHEMBL6163999
9.08IC500.83nMCHEMBL5411825
9.08IC500.827nMCHEMBL4789603
9.06IC500.88nMCHEMBL5440319
9.05IC500.9nMCHEMBL3828637
9.05IC500.9nMCHEMBL5416758
9.03IC500.93nMCHEMBL4060856
9.01IC500.97nMCHEMBL4060856
9.00IC501nMCHEMBL3799396
9.00IC501nMCHEMBL3806220
9.00IC501nMCHEMBL3828458
9.00IC501nMCHEMBL4076395
9.00IC500.99nMCHEMBL4066819
9.00IC500.99nMCHEMBL4062244
9.00IC501nMCHEMBL4455382
9.00IC501nMCHEMBL4877883
9.00IC501nMCHEMBL4856177
9.00IC501nMCHEMBL6044863
8.96IC501.1nMCHEMBL3805960

PubChem BioAssay actives

640 with measured affinity, of 1156 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-chloro-4-[6-[[(1R)-2-hydroxy-1-phenylethyl]amino]pyrazin-2-yl]phenol1474371: Inhibition of full length recombinant human His-tagged CDK8/Cyclin C expressed in baculovirus expression system using Ulight-GS peptide as substrate measured after 30 mins by TR-FRET based LANCE assayic500.0002uM
8-phenoxy-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0003uM
8-[[6-(methylamino)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0004uM
5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0004uM
5-[5-[(4-chlorophenyl)methyl]-1-methyltriazol-4-yl]-3-methyl-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0004uM
(5S)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyridine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0004uM
(2R)-2-[[5-(1H-indazol-5-yl)-3-pyridinyl]amino]-2-phenylethanol1474371: Inhibition of full length recombinant human His-tagged CDK8/Cyclin C expressed in baculovirus expression system using Ulight-GS peptide as substrate measured after 30 mins by TR-FRET based LANCE assayic500.0004uM
8-[[6-(2-methoxyethylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0005uM
8-[(2-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0005uM
(E)-N-[4-(morpholin-4-ylmethyl)phenyl]-3-[4-(1H-pyrazol-4-yl)-3-pyridinyl]prop-2-enamide1466029: Inhibition of kinase tracer 236 binding to full length N terminal GST-tagged human CDK8 (1 to 464 end residues) /CycC ( 1 to 283 end residues) expressed in baculovirus expression system after 60 min by TR-FRET assayic500.0005uM
5-[4-[(4-chlorophenyl)methyl]-5-methyl-1,2,4-triazol-3-yl]-3-methyl-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0005uM
(5R)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0005uM
8-methylsulfanyl-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0006uM
8-[(6-amino-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0006uM
8-[(6-acetamido-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0006uM
(5R)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-6,8-dihydro-5H-[1,2,4]triazolo[3,4-c][1,4]oxazine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0006uM
2-(1-methylimidazol-2-yl)-8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridine1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assayic500.0007uM
3-methyl-5-[5-methyl-4-[[4-(trifluoromethyl)phenyl]methyl]-1,2,4-triazol-3-yl]-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0007uM
5-[5-[(4-chlorophenyl)methyl]-1-methylpyrazol-4-yl]-3-methyl-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0007uM
4-(4-iodophenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0007uM
(5R)-5-(4-chlorophenyl)-7-methyl-3-(3-methyl-2H-indazol-5-yl)-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0008uM
N-methyl-8-(1-methyl-2,2-dioxo-3H-2,1-benzothiazol-5-yl)-1,6-naphthyridine-2-carboxamide1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assayic500.0009uM
8-[(6-carbamoyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0009uM
5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-pyrazolo[4,3-b]pyridine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0009uM
3-chloro-5-[4-[(4-chlorophenyl)methyl]-5-methyl-1,2,4-triazol-3-yl]-2H-indazole2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0009uM
8-[3-chloro-5-(1-methyl-2,2-dioxo-3H-2,1-benzothiazol-5-yl)-4-pyridinyl]-1-methyl-2,3,8-triazaspiro[4.5]dec-1-en-4-one1295765: Binding affinity to human CDK19 (1 to 502 amino acid residues)/Cyclin C (1 to 283 amino acid residues) by reporter displacement assayic500.0010uM
1-[8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridin-2-yl]imidazolidin-2-one1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assayic500.0010uM
8-[[6-(methylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0010uM
8-[(6-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0010uM
4-[2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridin-4-yl]oxybenzonitrile1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0010uM
2-[4-(4-isoquinolin-4-ylphenyl)pyrazol-1-yl]-N,N-dimethylacetamide1541941: Inhibition of CDK8/CyclinC (unknown origin)ic500.0010uM
8-[3-chloro-5-(1-methylindazol-5-yl)-2H-pyrazolo[3,4-b]pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one1769449: Inhibition of tracer 236 binding to recombinant human His-tagged full length CDK8/Cyclin C expressed in baculovirus expression system by Lanthascreen assayic500.0010uM
4-(4-methylpiperazin-1-yl)-N-[4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-yl]quinolin-7-amine1771106: Inhibition of human CDK8/cyclin C incubated for 2 hrs by [gamma-33P]-ATP assayic500.0010uM
[5-amino-8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridin-2-yl]-(3-methoxyazetidin-1-yl)methanone1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assayic500.0011uM
8-[[6-(2-ethoxyethylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0011uM
2-(2H-tetrazol-5-yl)-4-[4-(trifluoromethoxy)phenoxy]thieno[2,3-c]pyridine1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0011uM
4-(4-chlorophenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0011uM
N-(4-propan-2-ylphenyl)-4-pyrazolo[1,5-b]pyridazin-3-ylpyrimidin-2-amine1921466: Inhibition of CDK8/Cyclin C (unknown origin) by LanthaScreen binding assayic500.0011uM
[(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl]-(3-methyl-2H-pyrazolo[4,3-b]pyridin-5-yl)methanone1315916: Inhibition of Alexa647 tracer binding to full length recombinant human His-tagged CDK8/cyclin C expressed in Baculovirus expression system preincubated for 20 mins followed by tracer addition and incubated in dark for 60 mins by FRET-based Lanthascreen assayic500.0013uM
8-[[6-(2-methoxyethylcarbamoyl)-2-methyl-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0013uM
8-[3-chloro-5-[4-[1-(2-hydroxy-2-methylpropyl)pyrazol-4-yl]phenyl]-4-pyridinyl]-2,8-diazaspiro[4.5]decan-1-one1295765: Binding affinity to human CDK19 (1 to 502 amino acid residues)/Cyclin C (1 to 283 amino acid residues) by reporter displacement assayic500.0014uM
4-[2-[6-(4-methylpiperazine-1-carbonyl)naphthalen-2-yl]ethylamino]quinoline-6-carbonitrile1825673: Binding affinity to kinase tracer 236 binding to His tagged recombinant human CDK8/cyclinC assessed as dissociation constant by TR FRET based assaykd0.0014uM
[(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl]-(3-methyl-2H-indazol-5-yl)methanone1315916: Inhibition of Alexa647 tracer binding to full length recombinant human His-tagged CDK8/cyclin C expressed in Baculovirus expression system preincubated for 20 mins followed by tracer addition and incubated in dark for 60 mins by FRET-based Lanthascreen assayic500.0014uM
8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridine-2-carboxamide1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assayic500.0015uM
8-pyridin-3-yloxy-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assayic500.0015uM
(E)-3-[4-(3H-benzimidazol-5-yl)-3-pyridinyl]-N-[4-(morpholin-4-ylmethyl)phenyl]prop-2-enamide1466029: Inhibition of kinase tracer 236 binding to full length N terminal GST-tagged human CDK8 (1 to 464 end residues) /CycC ( 1 to 283 end residues) expressed in baculovirus expression system after 60 min by TR-FRET assayic500.0015uM
7-amino-4-(4-chlorophenoxy)thieno[2,3-c]pyridine-2-carboxamide1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0015uM
5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-pyrazolo[3,4-b]pyridine2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assayic500.0015uM
4-(4-methylphenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assayic500.0016uM
1-methyl-8-[(2-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g]indazole-6-carboxamide1613762: Displacement of Kinase tracer 236 from recombinant full-length human N-terminal GST-fused CDK8 (1 to 464 residues)/cyclin C (1 to 283 residues) expressed in baculovirus expression system after 60 mins by TR-FRET assayic500.0016uM

CTD chemical–gene interactions

44 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteincreases expression, decreases expression, affects cotreatment, increases abundance3
usnic acidaffects cotreatment, decreases expression, increases expression2
perfluorooctane sulfonic aciddecreases expression2
Arsenicincreases expression, affects cotreatment, increases abundance2
Calcitrioldecreases expression, increases expression2
Nanotubes, Carbondecreases expression, increases expression2
bisphenol Faffects cotreatment, decreases expression1
dicrotophosdecreases expression1
methylmercuric chloridedecreases expression1
bisphenol Adecreases expression1
manganese chlorideaffects cotreatment, increases abundance, increases expression1
beta-methylcholineaffects expression1
inecalcitoldecreases expression1
jinfukangdecreases expression1
bis-N,N-dimethylamino-2-(N-methylpyrrolyl)methyl cyclopentadienyl titanium (IV)increases expression1
Rosiglitazonedecreases expression1
Resveratrolaffects cotreatment, increases expression1
Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazonedecreases expression1
Dexamethasoneaffects cotreatment, decreases expression1
Dihydroxyacetoneincreases expression1
Environmental Pollutantsaffects expression1
Flame Retardantsincreases expression1
Fluorouracildecreases expression1
Indomethacinaffects cotreatment, decreases expression1
Lipopolysaccharidesaffects cotreatment, decreases expression1
Manganeseaffects cotreatment, increases abundance, increases expression1
Metforminaffects cotreatment, decreases expression1
Paraquatincreases expression1
Parathionincreases expression1
Piroxicamdecreases expression1

ChEMBL screening assays

226 unique, capped per target: 226 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5383245BindingPROTAC activity at Cyclin C in human MDA-MB-468 cells assessed as degradation of Cyclin C incubated for 48 hrs by Western blotting analysisDiscovery of LL-K8-22: A Selective, Durable, and Small-Molecule Degrader of the CDK8-Cyclin C Complex. — J Med Chem

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00211796PHASE4COMPLETEDDivalproex Sodium ER in Adult Autism
NCT00391261PHASE4COMPLETEDAn Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications.
NCT00409747PHASE4COMPLETEDMinocycline to Treat Childhood Regressive Autism
NCT00576732PHASE4COMPLETEDA Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder
NCT00844753PHASE4COMPLETEDAtomoxetine, Placebo and Parent Management Training in Autism
NCT01028820PHASE4COMPLETEDFMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders
NCT01098383PHASE4UNKNOWNTreatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders
NCT01333865PHASE4COMPLETEDA Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders
NCT01337700PHASE4COMPLETEDMilnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism
NCT01695200PHASE4COMPLETEDOmega-3 Fatty Acids in Autism Spectrum Disorders
NCT02069977PHASE4UNKNOWNStudy to Evaluate the Efficacy and Safety of Aripiprazole
NCT02096952PHASE4COMPLETEDMethylphenidate ER Liquid Formulation in Adults With ASD and ADHD
NCT02199925PHASE4UNKNOWNAn Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum
NCT02235467PHASE4COMPLETEDMultisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism
NCT02255565PHASE4COMPLETEDDose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study
NCT02940574PHASE4COMPLETEDNeural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders
NCT03333629PHASE4COMPLETEDPromoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes
NCT03337646PHASE4COMPLETEDEvaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism
NCT03538431PHASE4COMPLETEDImproving Driving in Young People With Autism Spectrum Disorders
NCT03757585PHASE4COMPLETEDNatural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD)
NCT04903353PHASE4COMPLETEDPragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole
NCT05063656PHASE4COMPLETEDBiomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin
NCT05146245PHASE4UNKNOWNSafety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT
NCT05916339PHASE4RECRUITINGAWARE: Management of ADHD in Autism Spectrum Disorder
NCT05954052PHASE4TERMINATEDA Study of Glutathione in Children With Autism Spectrum Disorder
NCT06853665PHASE4RECRUITINGThe TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine
NCT07054697PHASE4COMPLETEDPilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder
NCT07161804PHASE4COMPLETEDPilot RCT Using Homeopathic Medicines in ASD
NCT07439042PHASE4NOT_YET_RECRUITINGBuspirone for Anxiety in Autistic Youth
NCT00036231PHASE3TERMINATEDSynthetic Human Secretin in Children With Autism and Gastrointestinal Dysfunction
NCT00036244PHASE3COMPLETEDSynthetic Human Secretin in Children With Autism
NCT00065884PHASE3UNKNOWNValproate Response in Aggressive Autistic Adolescents
NCT00065962PHASE3COMPLETEDSecretin for the Treatment of Autism
NCT00252603PHASE3COMPLETEDGalantamine Versus Placebo in Childhood Autism
NCT00346736PHASE3COMPLETEDUse of Acupuncture In Children With Autistic Spectrum Disorder
NCT00352248PHASE3COMPLETEDRandomized Controlled Trial of Acupuncture Versus Sham Acupuncture in Autistic Spectrum Disorder
NCT00352352PHASE3COMPLETEDUse of Acupuncture In Children With Autistic Spectrum Disorder
NCT00355329PHASE3COMPLETEDRandomized Control Trial of Using Tongue Acupuncture in Autistic Spectrum Disorder Using PET Scan for Clinical Correlation
NCT00498173PHASE3COMPLETEDEffectiveness of Atomoxetine in Treating ADHD Symptoms in Children and Adolescents With Autism
NCT00541346PHASE3COMPLETEDA Pilot Study of Daytrana TM in Children With Autism Co-Morbid for Attention Deficit Hyperactivity Disorder (ADHD) Symptoms