CCNC
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Also known as CycC
Summary
CCNC (cyclin C, HGNC:1581) is a protein-coding gene on chromosome 6q16.2, encoding Cyclin-C (P24863). Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. It is a selective cancer dependency (DepMap: 27.1% of cell lines).
The protein encoded by this gene is a member of the cyclin family of proteins. The encoded protein interacts with cyclin-dependent kinase 8 and induces the phophorylation of the carboxy-terminal domain of the large subunit of RNA polymerase II. The level of mRNAs for this gene peaks in the G1 phase of the cell cycle. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 892 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 41 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 1
- Druggable target: yes — 4 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 27.1% of screened cell lines
- MANE Select transcript:
NM_005190
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1581 |
| Approved symbol | CCNC |
| Name | cyclin C |
| Location | 6q16.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CycC |
| Ensembl gene | ENSG00000112237 |
| Ensembl biotype | protein_coding |
| OMIM | 123838 |
| Entrez | 892 |
Gene structure
Transcript identifiers
Ensembl transcripts: 30 — 22 protein_coding, 4 retained_intron, 3 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000326298, ENST00000369217, ENST00000369220, ENST00000482541, ENST00000484049, ENST00000486428, ENST00000518714, ENST00000519617, ENST00000520371, ENST00000520429, ENST00000521017, ENST00000523310, ENST00000523541, ENST00000523639, ENST00000523799, ENST00000523961, ENST00000523985, ENST00000524049, ENST00000627680, ENST00000882415, ENST00000882416, ENST00000882417, ENST00000882418, ENST00000882419, ENST00000882420, ENST00000930284, ENST00000930285, ENST00000930286, ENST00000962620, ENST00000962621
RefSeq mRNA: 3 — MANE Select: NM_005190
NM_001013399, NM_001363537, NM_005190
CCDS: CCDS34502, CCDS47461, CCDS87420
Canonical transcript exons
ENST00000520429 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002120300 | 99568496 | 99568660 |
| ENSE00003514289 | 99558497 | 99558548 |
| ENSE00003523925 | 99549508 | 99549575 |
| ENSE00003577908 | 99550218 | 99550309 |
| ENSE00003585134 | 99550993 | 99551028 |
| ENSE00003590914 | 99546395 | 99546474 |
| ENSE00003600182 | 99542387 | 99543609 |
| ENSE00003656337 | 99561367 | 99561436 |
| ENSE00003681803 | 99551840 | 99551895 |
| ENSE00003683555 | 99561597 | 99561681 |
| ENSE00003689363 | 99545112 | 99545230 |
| ENSE00003690529 | 99562842 | 99562948 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 98.84.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.7780 / max 354.5567, expressed in 1816 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 74815 | 19.6777 | 1805 |
| 74814 | 15.6005 | 1773 |
| 74816 | 4.0250 | 1531 |
| 204113 | 0.4748 | 262 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| parotid gland | UBERON:0001831 | 98.84 | gold quality |
| oral cavity | UBERON:0000167 | 98.24 | gold quality |
| corpus epididymis | UBERON:0004359 | 98.02 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.64 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.22 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.21 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.04 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 96.93 | gold quality |
| upper leg skin | UBERON:0004262 | 96.91 | gold quality |
| caput epididymis | UBERON:0004358 | 96.86 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 96.85 | gold quality |
| amniotic fluid | UBERON:0000173 | 96.73 | gold quality |
| colonic mucosa | UBERON:0000317 | 96.58 | gold quality |
| pancreas | UBERON:0001264 | 96.55 | gold quality |
| body of pancreas | UBERON:0001150 | 96.53 | gold quality |
| type B pancreatic cell | CL:0000169 | 96.51 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 96.36 | gold quality |
| nephron tubule | UBERON:0001231 | 96.29 | gold quality |
| mammalian vulva | UBERON:0000997 | 96.26 | gold quality |
| penis | UBERON:0000989 | 96.22 | gold quality |
| hair follicle | UBERON:0002073 | 96.08 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 96.08 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 96.01 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 95.95 | gold quality |
| upper arm skin | UBERON:0004263 | 95.94 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 95.87 | gold quality |
| seminal vesicle | UBERON:0000998 | 95.82 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.78 | gold quality |
| gall bladder | UBERON:0002110 | 95.76 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 95.75 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7008 | no | 426.88 |
| E-CURD-89 | no | 285.89 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| HES1 | Activation |
Upstream regulators (CollecTRI, top): CREB1, STOX1, YBX1
miRNA regulators (miRDB)
108 targeting CCNC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 27.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 18)
- The present observations suggest different cellular functions of cyclin C in neurons and astrocytes in alzheimer’s disease. (PMID:12600719)
- A cellular pool of cyclin C combines with cdk3 to stimulate pRb phosphorylation at S807/811 during the G0/G1 transition, and this phosphorylation is required for cells to exit G0 efficiently. (PMID:15084261)
- Identification of multiple 1alpha,25(OH)2D3 response elements in the cyclin C promoter. (PMID:15863722)
- Physical chromosome mapping of the deleted region of chromosome 6 suggests that CCNC is a candidate tumor suppressor gene. (PMID:17089020)
- C2 isoform may play a presently unexplored and important role in mammalian testis and probably this isoform is the one that is mainly implicated in cell cycle regulation. (PMID:17385550)
- Data suggests that the primary regulation of Cyclin C by all-trans RA and Forskolin mediates some of the cell cycle control actions of these compounds. (PMID:19683536)
- Studies establish cyclin C as a critical regulator of the G(0)/G(1) transition of human HSPCs and suggest that modulating cyclin C levels may be useful for HSC expansion and more efficient engraftment. (PMID:19967789)
- 2.2-A crystal structure of CDK8/CycC in complex with sorafenib; CDK8 structure reveals a unique CycC recognition helix that explains the specificity of the CDK8/CycC pair and discrimination among the highly promiscuous binding in the CDK/cyclin family (PMID:21806996)
- Silencing beta-catenin gene may induce changes of cell cycle and in cyclin B1 and cyclin C protein expression. (PMID:22024040)
- analysis of the structure-kinetic relationship of the cyclin-dependent kinase 8 (CDK8)/cyclin C (CycC) complex (PMID:23630251)
- Cancer-mediated CDK8 point mutations (D173A and D189N) change the binding pattern of cdk8 to its partner, CycC. (PMID:24754906)
- cyclin-C-CDK complexes phosphorylate the Notch1 intracellular domain (ICN1) and promote ICN1 degradation (PMID:25344755)
- results suggest that CCNC temporarily protects SRC-2 against degradation and this event is involved in the transcriptional regulation of SRC-2 cell cycle target genes. (PMID:25986860)
- our results suggest that mTORC1 activation in NAFLD and insulin resistance results in down-regulation of the CDK8-CycC complex and elevation of lipogenic protein expression. (PMID:26042770)
- Oncogenic exon 2 mutations in Mediator subunit MED12 disrupt allosteric activation of cyclin C-CDK8/19. (PMID:29440396)
- cyclin C binding stimulates the reduction of low-GTPase activity Drp1 oligomers into dimers capable of producing high-GTPase activity filaments. (PMID:30516433)
- Genome-wide CRISPR screens reveal cyclin C as synthetic survival target of BRCA2. (PMID:34197614)
- Loss of Cyclin C or CDK8 provides ATR inhibitor resistance by suppressing transcription-associated replication stress. (PMID:34329458)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ccnc | ENSDARG00000009607 |
| mus_musculus | Ccnc | ENSMUSG00000028252 |
| rattus_norvegicus | Ccnc | ENSRNOG00000007719 |
Protein
Protein identifiers
Cyclin-C — P24863 (reviewed: P24863)
Alternative names: SRB11 homolog
All UniProt accessions (11): P24863, E5RFK5, E5RFX8, E5RHL8, E5RI39, E5RIH8, G5E954, H0YBQ5, J3KP90, Q5JV82, Q7Z4L3
UniProt curated annotations — full annotation on UniProt →
Function. Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex.
Subunit / interactions. Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The cylin/CDK pair formed by CCNC/CDK8 also associates with the large subunit of RNA polymerase II.
Subcellular location. Nucleus.
Tissue specificity. Highest levels in pancreas. High levels in heart, liver, skeletal muscle and kidney. Low levels in brain.
Similarity. Belongs to the cyclin family. Cyclin C subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P24863-1 | 1 | yes |
| P24863-2 | 2 |
RefSeq proteins (3): NP_001013417, NP_001350466, NP_005181* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006671 | Cyclin_N | Domain |
| IPR013763 | Cyclin-like_dom | Domain |
| IPR031658 | Cyclin_C_2 | Domain |
| IPR036915 | Cyclin-like_sf | Homologous_superfamily |
| IPR043198 | Cyclin/Ssn8 | Family |
Pfam: PF00134, PF16899
UniProt features (28 total): helix 15, turn 6, chain 1, domain 1, strand 1, region of interest 1, compositionally biased region 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
36 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5XS2 | X-RAY DIFFRACTION | 2.04 |
| 4F6U | X-RAY DIFFRACTION | 2.1 |
| 9H8S | X-RAY DIFFRACTION | 2.16 |
| 5ICP | X-RAY DIFFRACTION | 2.18 |
| 6R3S | X-RAY DIFFRACTION | 2.19 |
| 6Y0A | X-RAY DIFFRACTION | 2.19 |
| 3RGF | X-RAY DIFFRACTION | 2.2 |
| 4F7S | X-RAY DIFFRACTION | 2.2 |
| 5CEI | X-RAY DIFFRACTION | 2.24 |
| 5IDN | X-RAY DIFFRACTION | 2.26 |
| 5XQX | X-RAY DIFFRACTION | 2.3 |
| 5HNB | X-RAY DIFFRACTION | 2.35 |
| 5FGK | X-RAY DIFFRACTION | 2.36 |
| 5HBE | X-RAY DIFFRACTION | 2.38 |
| 4F6W | X-RAY DIFFRACTION | 2.39 |
| 5HVY | X-RAY DIFFRACTION | 2.39 |
| 4CRL | X-RAY DIFFRACTION | 2.4 |
| 6T41 | X-RAY DIFFRACTION | 2.45 |
| 6QTJ | X-RAY DIFFRACTION | 2.48 |
| 5HBH | X-RAY DIFFRACTION | 2.5 |
| 9H8C | X-RAY DIFFRACTION | 2.57 |
| 4F6S | X-RAY DIFFRACTION | 2.6 |
| 4F7J | X-RAY DIFFRACTION | 2.6 |
| 5I5Z | X-RAY DIFFRACTION | 2.6 |
| 5BNJ | X-RAY DIFFRACTION | 2.64 |
| 4F7N | X-RAY DIFFRACTION | 2.65 |
| 5IDP | X-RAY DIFFRACTION | 2.65 |
| 4G6L | X-RAY DIFFRACTION | 2.7 |
| 6QTG | X-RAY DIFFRACTION | 2.7 |
| 6TPA | X-RAY DIFFRACTION | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P24863-F1 | 92.05 | 0.88 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 275
Function
Pathways and Gene Ontology
Reactome pathways
34 pathways
| ID | Pathway |
|---|---|
| R-HSA-1989781 | PPARA activates gene expression |
| R-HSA-2122947 | NOTCH1 Intracellular Domain Regulates Transcription |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-2173796 | SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
| R-HSA-2644606 | Constitutive Signaling by NOTCH1 PEST Domain Mutants |
| R-HSA-2894862 | Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants |
| R-HSA-381340 | Transcriptional regulation of white adipocyte differentiation |
| R-HSA-9833110 | RSV-host interactions |
| R-HSA-9841922 | MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1430728 | Metabolism |
| R-HSA-157118 | Signaling by NOTCH |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-170834 | Signaling by TGF-beta Receptor Complex |
| R-HSA-1980143 | Signaling by NOTCH1 |
| R-HSA-212165 | Epigenetic regulation of gene expression |
| R-HSA-2173793 | Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| R-HSA-2644602 | Signaling by NOTCH1 PEST Domain Mutants in Cancer |
| R-HSA-2644603 | Signaling by NOTCH1 in Cancer |
| R-HSA-2894858 | Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer |
| R-HSA-400206 | Regulation of lipid metabolism by PPARalpha |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-5663202 | Diseases of signal transduction by growth factor receptors and second messengers |
| R-HSA-5663205 | Infectious disease |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-9006936 | Signaling by TGFB family members |
| R-HSA-9818564 | Epigenetic regulation of gene expression by MLL3 and MLL4 complexes |
| R-HSA-9820952 | Respiratory Syncytial Virus Infection Pathway |
MSigDB gene sets: 234 (showing top):
REACTOME_TRANSCRIPTIONAL_REGULATION_OF_WHITE_ADIPOCYTE_DIFFERENTIATION, KALMA_E2F1_TARGETS, REACTOME_SIGNALING_BY_NOTCH, HORIUCHI_WTAP_TARGETS_DN, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, ENK_UV_RESPONSE_KERATINOCYTE_UP, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE, KYNG_DNA_DAMAGE_DN, BROWNE_HCMV_INFECTION_16HR_UP, GOBP_NEGATIVE_REGULATION_OF_NOTCH_SIGNALING_PATHWAY, PUJANA_CHEK2_PCC_NETWORK, CATTTCA_MIR203, MILI_PSEUDOPODIA_HAPTOTAXIS_UP
GO Biological Process (4): G0 to G1 transition (GO:0045023), negative regulation of Notch signaling pathway (GO:0045746), positive regulation of transcription by RNA polymerase II (GO:0045944), regulation of transcription by RNA polymerase II (GO:0006357)
GO Molecular Function (3): cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (5): cyclin-dependent protein kinase holoenzyme complex (GO:0000307), nucleus (GO:0005634), nucleoplasm (GO:0005654), mediator complex (GO:0016592), CKM complex (GO:1990508)
Reactome top-level categories
Rollup of top-17 pathways:
| Category | Pathways |
|---|---|
| Regulation of lipid metabolism by PPARalpha | 1 |
| Signaling by NOTCH1 | 1 |
| RNA Polymerase II Transcription | 1 |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 1 |
| Signaling by NOTCH1 PEST Domain Mutants in Cancer | 1 |
| Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer | 1 |
| Adipogenesis | 1 |
| Respiratory Syncytial Virus Infection Pathway | 1 |
| Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes | 1 |
| Signal Transduction | 1 |
| Signaling by TGFB family members | 1 |
| Signaling by NOTCH | 1 |
| Gene expression (Transcription) | 1 |
| Signaling by TGF-beta Receptor Complex | 1 |
| Generic Transcription Pathway | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transcription by RNA polymerase II | 2 |
| cell cycle process | 1 |
| Notch signaling pathway | 1 |
| regulation of Notch signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| cyclin-dependent protein serine/threonine kinase activity | 1 |
| cyclin-dependent protein kinase regulator activity | 1 |
| protein binding | 1 |
| binding | 1 |
| serine/threonine protein kinase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| core mediator complex | 1 |
| nuclear protein-containing complex | 1 |
| nuclear cyclin-dependent protein kinase holoenzyme complex | 1 |
Protein interactions and networks
STRING
2600 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CCNC | MED12 | Q93074 | 999 |
| CCNC | CDK8 | P49336 | 999 |
| CCNC | MED13 | Q9UHV7 | 998 |
| CCNC | CDK19 | Q9BWU1 | 997 |
| CCNC | CDK3 | Q00526 | 995 |
| CCNC | MED12L | Q86YW9 | 993 |
| CCNC | MED13L | Q71F56 | 987 |
| CCNC | MED6 | O75586 | 929 |
| CCNC | CDK7 | P50613 | 924 |
| CCNC | MED14 | O60244 | 919 |
| CCNC | MED17 | Q9NVC6 | 917 |
| CCNC | MED21 | Q13503 | 893 |
| CCNC | CDK2 | P24941 | 858 |
| CCNC | MED26 | O95402 | 808 |
| CCNC | MED1 | Q15648 | 771 |
IntAct
409 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCNC | CDK8 | psi-mi:“MI:0915”(physical association) | 0.980 |
| CDK8 | CCNC | psi-mi:“MI:0915”(physical association) | 0.980 |
| CDK8 | CCNC | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| CCNC | CDK8 | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| CCNC | CDK8 | psi-mi:“MI:0914”(association) | 0.980 |
| CCNC | CDK8 | psi-mi:“MI:2364”(proximity) | 0.980 |
| MED10 | MED24 | psi-mi:“MI:0914”(association) | 0.870 |
| CDK8 | MED19 | psi-mi:“MI:2364”(proximity) | 0.850 |
| CDK8 | MED19 | psi-mi:“MI:0914”(association) | 0.850 |
| CCNC | CDK3 | psi-mi:“MI:0915”(physical association) | 0.750 |
| CCNC | KRT31 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT31 | CCNC | psi-mi:“MI:0915”(physical association) | 0.720 |
| CRX | CCNC | psi-mi:“MI:0915”(physical association) | 0.670 |
| CCNC | ZNF18 | psi-mi:“MI:0915”(physical association) | 0.670 |
| PBXIP1 | CCNC | psi-mi:“MI:0915”(physical association) | 0.670 |
| CCNC | PNMA5 | psi-mi:“MI:0915”(physical association) | 0.670 |
| NMNAT1 | CCNC | psi-mi:“MI:0915”(physical association) | 0.670 |
| TRIM39 | CCNC | psi-mi:“MI:0915”(physical association) | 0.670 |
BioGRID (365): CDK8 (Two-hybrid), CRX (Two-hybrid), GOLGA2 (Two-hybrid), KRT13 (Two-hybrid), KRT15 (Two-hybrid), KRT31 (Two-hybrid), MEOX2 (Two-hybrid), MGST3 (Two-hybrid), NEFL (Two-hybrid), ZNF18 (Two-hybrid), TADA3 (Two-hybrid), PUF60 (Two-hybrid), MBIP (Two-hybrid), TRIM39 (Two-hybrid), PBXIP1 (Two-hybrid)
ESM2 similar proteins: A2VEA3, A5PKA5, B1H1E4, B5FXJ6, O15294, O89050, P24863, P39947, P55168, P56558, P61201, P61202, P61203, P79101, P81436, Q05048, Q13888, Q27HV0, Q28F72, Q32NS4, Q3UHD6, Q3ZCK5, Q4KLA0, Q4R9A8, Q4VC33, Q5BJQ6, Q5F398, Q5R532, Q5R8K2, Q5RB35, Q5RKJ1, Q62447, Q6GR10, Q6IQT4, Q6IR75, Q6PFJ9, Q7L5Y9, Q7SXR3, Q8C6G8, Q8CGY8
Diamond homologs: A1C7R6, A3LPX1, A4RD79, F1QMB9, O75909, O88874, O94503, P24863, P25008, P39947, P47821, P55168, P93411, Q0CV29, Q16JA2, Q1EAW8, Q28F72, Q29AI1, Q2GVK1, Q2UDB2, Q3ZCK5, Q4KLA0, Q4WZT9, Q56YF8, Q5A4H9, Q5BBA8, Q62447, Q6BYF8, Q6CAC7, Q6CP20, Q6FJE8, Q75AX7, Q7QB13, Q86KE7, Q9C1M4, Q9FJK6, Q9FJK7, Q9HE63, P51946, Q3ZBL9
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CCNC | “up-regulates quantity by expression” | HES1 | “transcriptional regulation” |
| CCNC | down-regulates | NOTCH1 | phosphorylation |
| MAML1 | up-regulates | CCNC | relocalization |
| CCNC | down-regulates | NOTCH | phosphorylation |
| CCNC | “form complex” | “CKM complex” | binding |
| CCNC | “form complex” | CyclinC/CDK19 | binding |
| CCNC | “form complex” | CyclinC/CDK3 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 85 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes | 6 | 22.3× | 3e-05 |
| Epigenetic regulation by WDR5-containing histone modifying complexes | 8 | 21.3× | 1e-06 |
| Epigenetic regulation of gene expression by MLL3 and MLL4 complexes | 6 | 20.4× | 4e-05 |
| Respiratory Syncytial Virus Infection Pathway | 5 | 17.0× | 4e-04 |
| Adipogenesis | 6 | 16.2× | 1e-04 |
| RSV-host interactions | 5 | 13.5× | 1e-03 |
| Epigenetic regulation of gene expression | 10 | 12.3× | 1e-06 |
| Regulation of lipid metabolism by PPARalpha | 5 | 12.2× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| morphogenesis of an epithelium | 6 | 26.1× | 3e-05 |
| positive regulation of transcription elongation by RNA polymerase II | 6 | 22.9× | 4e-05 |
| intermediate filament organization | 7 | 21.3× | 2e-05 |
| RNA polymerase II preinitiation complex assembly | 5 | 17.2× | 1e-03 |
| epithelial cell differentiation | 5 | 11.1× | 7e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
41 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 22 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4682664 | GRCh37/hg19 6q16.1-16.2(chr6:96096962-100369465)x1 | Pathogenic |
| 814851 | GRCh37/hg19 6q16.1-16.2(chr6:98870687-100270433)x1 | Likely pathogenic |
SpliceAI
2111 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:99545144:A:AC | donor_gain | 1.0000 |
| 6:99545145:C:CC | donor_gain | 1.0000 |
| 6:99545230:TCTAG:T | acceptor_loss | 1.0000 |
| 6:99545231:C:CA | acceptor_loss | 1.0000 |
| 6:99545231:C:CC | acceptor_gain | 1.0000 |
| 6:99551896:C:CC | acceptor_gain | 1.0000 |
| 6:99558495:A:AC | donor_gain | 1.0000 |
| 6:99558496:C:CC | donor_gain | 1.0000 |
| 6:99558496:CATA:C | donor_gain | 1.0000 |
| 6:99561591:TCCTA:T | donor_loss | 1.0000 |
| 6:99561592:CCTA:C | donor_loss | 1.0000 |
| 6:99561593:CTAC:C | donor_loss | 1.0000 |
| 6:99561594:TACC:T | donor_loss | 1.0000 |
| 6:99561595:A:T | donor_loss | 1.0000 |
| 6:99561596:CCT:C | donor_loss | 1.0000 |
| 6:99561677:GATAA:G | acceptor_gain | 1.0000 |
| 6:99561678:ATAA:A | acceptor_gain | 1.0000 |
| 6:99561679:TAA:T | acceptor_gain | 1.0000 |
| 6:99561680:AA:A | acceptor_gain | 1.0000 |
| 6:99561681:ACTAA:A | acceptor_loss | 1.0000 |
| 6:99561682:C:CC | acceptor_gain | 1.0000 |
| 6:99561682:C:CG | acceptor_loss | 1.0000 |
| 6:99561683:T:G | acceptor_loss | 1.0000 |
| 6:99562836:GTTTA:G | donor_loss | 1.0000 |
| 6:99562837:TTTA:T | donor_loss | 1.0000 |
| 6:99562838:TTA:T | donor_loss | 1.0000 |
| 6:99562841:C:CG | donor_loss | 1.0000 |
| 6:99562863:A:C | donor_gain | 1.0000 |
| 6:99562866:T:TA | donor_gain | 1.0000 |
| 6:99562867:C:A | donor_gain | 1.0000 |
AlphaMissense
1878 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:99546470:G:C | C201W | 1.000 |
| 6:99551006:A:G | L142P | 1.000 |
| 6:99551011:G:C | F140L | 1.000 |
| 6:99551011:G:T | F140L | 1.000 |
| 6:99551013:A:G | F140L | 1.000 |
| 6:99551015:T:A | E139V | 1.000 |
| 6:99561373:T:A | K96N | 1.000 |
| 6:99561373:T:G | K96N | 1.000 |
| 6:99561374:T:A | K96I | 1.000 |
| 6:99561375:T:C | K96E | 1.000 |
| 6:99561380:G:T | A94E | 1.000 |
| 6:99561391:A:C | C90W | 1.000 |
| 6:99561392:C:T | C90Y | 1.000 |
| 6:99561393:A:G | C90R | 1.000 |
| 6:99561608:T:A | R71S | 1.000 |
| 6:99561608:T:G | R71S | 1.000 |
| 6:99561627:G:T | A65D | 1.000 |
| 6:99561628:C:G | A65P | 1.000 |
| 6:99561633:G:T | A63D | 1.000 |
| 6:99561666:C:T | G52D | 1.000 |
| 6:99561667:C:G | G52R | 1.000 |
| 6:99562941:A:G | W14R | 1.000 |
| 6:99562941:A:T | W14R | 1.000 |
| 6:99546427:A:G | W216R | 0.999 |
| 6:99546427:A:T | W216R | 0.999 |
| 6:99546459:G:T | A205D | 0.999 |
| 6:99546468:A:G | L202P | 0.999 |
| 6:99546471:C:T | C201Y | 0.999 |
| 6:99546472:A:G | C201R | 0.999 |
| 6:99549513:G:T | A198D | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000272882 (6:99546210 C>A,T), RS1000428503 (6:99555028 G>A), RS1000523735 (6:99559660 A>T), RS1000537592 (6:99568079 C>A), RS1000566570 (6:99549992 A>G), RS1000652243 (6:99567881 C>A), RS1000876217 (6:99564496 A>G), RS1000957856 (6:99559212 T>C), RS1001040696 (6:99552041 T>C), RS1001078298 (6:99542397 G>GA), RS1001354052 (6:99547144 T>C), RS1001593083 (6:99551487 T>G), RS1001881104 (6:99565915 C>T), RS1001922786 (6:99551122 T>C), RS1002031061 (6:99558378 G>A,T)
Disease associations
OMIM: gene MIM:123838 | disease phenotypes: MIM:209850
GenCC curated gene-disease
Mondo (2): autism (MONDO:0005260), CIC-rearranged sarcoma (MONDO:0956989)
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000717 | Autism |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007118_1 | Erectile dysfunction | 2.000000e-37 |
| GCST010002_330 | Refractive error | 2.000000e-15 |
| GCST011494_33 | Daytime nap | 3.000000e-10 |
| GCST012419_6 | Longevity (100 years and older) | 4.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007828 | daytime rest measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001321 | Autistic Disorder | F03.625.164.113.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (5): CHEMBL2401607 (SINGLE PROTEIN), CHEMBL3038474 (PROTEIN COMPLEX), CHEMBL3883323 (PROTEIN COMPLEX), CHEMBL4888443 (PROTEIN COMPLEX), CHEMBL4888454 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
4 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 86,276 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1336 | SORAFENIB | 4 | 86,060 |
| CHEMBL5199065 | ISTISOCICLIB | 2 | 21 |
| CHEMBL4076837 | SENEXIN B | 1 | 104 |
| CHEMBL4225966 | SEL-120 FREE BASE | 1 | 91 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
93 measured of 97 human assays (97 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 5-cyclopropyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 0.48 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamide | IC50 | 0.77 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-fluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamide | IC50 | 0.827 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.09 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3,7,7-trimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 13-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-fluoroethyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclobutane]-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| (7S)-7-cyclohexyl-3-ethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| (7R)-7-cyclohexyl-3-ethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 1.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-chloro-3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamide | IC50 | 2.41 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-cyclopropyl-3-ethyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 2.65 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxylic acid | IC50 | 3.01 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethyl-1’-(2,2,2-trifluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamide | IC50 | 3.14 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| (7S)-7-(oxan-4-yl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 4.46 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamide | IC50 | 4.58 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-methylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamide | IC50 | 6.1 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 1’-acetylspiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamide | IC50 | 7.48 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamide | IC50 | 8.22 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| (7S)-7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 8.5 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-methoxyethyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 11.5 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 11.9 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethyl-5-(3-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 13.9 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7-methyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 14.4 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethyl-5-(2-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 16.4 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 16.6 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-ethyl-7,7-dimethyl-5-[2-(trifluoromethyl)phenyl]-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 16.7 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| (7R)-7-cyclohexyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 19.3 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-3-(2,2,2-trifluoroethyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 19.4 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-5-(4-sulfamoylphenyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acid | IC50 | 20.7 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-methoxyethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-oxane]-4-carboxamide | IC50 | 20.9 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-ethenyl-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 29.5 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7-methyl-7-propan-2-yl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 31.1 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 13-chloro-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxylic acid | IC50 | 31.4 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 1’-(2,2,2-trifluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamide | IC50 | 40.5 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-(3,6-dihydro-2H-pyran-4-yl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 70.5 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-5-(4-sulfamoylphenyl)-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 81.3 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-(3,6-dihydro-2H-pyran-4-yl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acid | IC50 | 86.6 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-fluoroethyl)-5-(2-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 97.3 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-5-phenyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 107 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-(2-hydroxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 112 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 1’-(3,3,3-trifluoropropyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,4’-piperidine]-4-carboxamide | IC50 | 120 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 5-(3-methoxyphenyl)-7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxamide | IC50 | 127 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 7,7-dimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-4-carboxylic acid | IC50 | 146 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 3-(2-fluoroethyl)spiro[8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(9),2(6),4,10,12-pentaene-7,1’-cyclohexane]-4-carboxamide | IC50 | 148 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
| 13-chloro-3,7,7-trimethyl-8-oxa-3,11-diazatricyclo[7.4.0.02,6]trideca-1(13),2(6),4,9,11-pentaene-4-carboxamide | IC50 | 158 nM | US-10208056: Condensed tricyclic compounds as protein kinase inhibitors |
ChEMBL bioactivities
846 potent at pChembl≥5 of 848 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.72 | IC50 | 0.191 | nM | CHEMBL4789125 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL4078454 |
| 9.58 | IC50 | 0.262 | nM | CHEMBL4789603 |
| 9.56 | IC50 | 0.278 | nM | CHEMBL4776812 |
| 9.50 | IC50 | 0.314 | nM | CHEMBL4777356 |
| 9.47 | IC50 | 0.34 | nM | CHEMBL4083552 |
| 9.44 | IC50 | 0.36 | nM | CHEMBL4061525 |
| 9.43 | IC50 | 0.37 | nM | CHEMBL5435821 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4096487 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5434183 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL5409410 |
| 9.39 | IC50 | 0.407 | nM | CHEMBL5752178 |
| 9.34 | IC50 | 0.46 | nM | CHEMBL4066819 |
| 9.33 | IC50 | 0.47 | nM | CHEMBL4070408 |
| 9.33 | IC50 | 0.466 | nM | CHEMBL4780792 |
| 9.32 | IC50 | 0.48 | nM | CHEMBL5405004 |
| 9.32 | IC50 | 0.48 | nM | CHEMBL4792305 |
| 9.31 | IC50 | 0.49 | nM | CHEMBL5414359 |
| 9.27 | IC50 | 0.54 | nM | CHEMBL4091527 |
| 9.26 | IC50 | 0.55 | nM | CHEMBL4083552 |
| 9.24 | IC50 | 0.57 | nM | CHEMBL4086487 |
| 9.23 | IC50 | 0.59 | nM | CHEMBL4061525 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL4074204 |
| 9.20 | IC50 | 0.63 | nM | CHEMBL5416117 |
| 9.19 | IC50 | 0.65 | nM | CHEMBL4082469 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL498385 |
| 9.15 | IC50 | 0.71 | nM | CHEMBL3828221 |
| 9.15 | IC50 | 0.71 | nM | CHEMBL5402477 |
| 9.15 | IC50 | 0.7 | nM | CHEMBL5396725 |
| 9.11 | IC50 | 0.77 | nM | CHEMBL4070408 |
| 9.11 | IC50 | 0.77 | nM | CHEMBL4777356 |
| 9.10 | Kd | 0.7943 | nM | CHEMBL6163999 |
| 9.08 | IC50 | 0.83 | nM | CHEMBL5411825 |
| 9.08 | IC50 | 0.827 | nM | CHEMBL4789603 |
| 9.06 | IC50 | 0.88 | nM | CHEMBL5440319 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL3828637 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL5416758 |
| 9.03 | IC50 | 0.93 | nM | CHEMBL4060856 |
| 9.01 | IC50 | 0.97 | nM | CHEMBL4060856 |
| 9.00 | IC50 | 1 | nM | CHEMBL3799396 |
| 9.00 | IC50 | 1 | nM | CHEMBL3806220 |
| 9.00 | IC50 | 1 | nM | CHEMBL3828458 |
| 9.00 | IC50 | 1 | nM | CHEMBL4076395 |
| 9.00 | IC50 | 0.99 | nM | CHEMBL4066819 |
| 9.00 | IC50 | 0.99 | nM | CHEMBL4062244 |
| 9.00 | IC50 | 1 | nM | CHEMBL4455382 |
| 9.00 | IC50 | 1 | nM | CHEMBL4877883 |
| 9.00 | IC50 | 1 | nM | CHEMBL4856177 |
| 9.00 | IC50 | 1 | nM | CHEMBL6044863 |
| 8.96 | IC50 | 1.1 | nM | CHEMBL3805960 |
PubChem BioAssay actives
640 with measured affinity, of 1156 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-chloro-4-[6-[[(1R)-2-hydroxy-1-phenylethyl]amino]pyrazin-2-yl]phenol | 1474371: Inhibition of full length recombinant human His-tagged CDK8/Cyclin C expressed in baculovirus expression system using Ulight-GS peptide as substrate measured after 30 mins by TR-FRET based LANCE assay | ic50 | 0.0002 | uM |
| 8-phenoxy-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0003 | uM |
| 8-[[6-(methylamino)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0004 | uM |
| 5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0004 | uM |
| 5-[5-[(4-chlorophenyl)methyl]-1-methyltriazol-4-yl]-3-methyl-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0004 | uM |
| (5S)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyridine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0004 | uM |
| (2R)-2-[[5-(1H-indazol-5-yl)-3-pyridinyl]amino]-2-phenylethanol | 1474371: Inhibition of full length recombinant human His-tagged CDK8/Cyclin C expressed in baculovirus expression system using Ulight-GS peptide as substrate measured after 30 mins by TR-FRET based LANCE assay | ic50 | 0.0004 | uM |
| 8-[[6-(2-methoxyethylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0005 | uM |
| 8-[(2-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0005 | uM |
| (E)-N-[4-(morpholin-4-ylmethyl)phenyl]-3-[4-(1H-pyrazol-4-yl)-3-pyridinyl]prop-2-enamide | 1466029: Inhibition of kinase tracer 236 binding to full length N terminal GST-tagged human CDK8 (1 to 464 end residues) /CycC ( 1 to 283 end residues) expressed in baculovirus expression system after 60 min by TR-FRET assay | ic50 | 0.0005 | uM |
| 5-[4-[(4-chlorophenyl)methyl]-5-methyl-1,2,4-triazol-3-yl]-3-methyl-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0005 | uM |
| (5R)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0005 | uM |
| 8-methylsulfanyl-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0006 | uM |
| 8-[(6-amino-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0006 | uM |
| 8-[(6-acetamido-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0006 | uM |
| (5R)-5-(4-chlorophenyl)-3-(3-methyl-2H-indazol-5-yl)-6,8-dihydro-5H-[1,2,4]triazolo[3,4-c][1,4]oxazine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0006 | uM |
| 2-(1-methylimidazol-2-yl)-8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridine | 1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assay | ic50 | 0.0007 | uM |
| 3-methyl-5-[5-methyl-4-[[4-(trifluoromethyl)phenyl]methyl]-1,2,4-triazol-3-yl]-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0007 | uM |
| 5-[5-[(4-chlorophenyl)methyl]-1-methylpyrazol-4-yl]-3-methyl-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0007 | uM |
| 4-(4-iodophenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0007 | uM |
| (5R)-5-(4-chlorophenyl)-7-methyl-3-(3-methyl-2H-indazol-5-yl)-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0008 | uM |
| N-methyl-8-(1-methyl-2,2-dioxo-3H-2,1-benzothiazol-5-yl)-1,6-naphthyridine-2-carboxamide | 1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assay | ic50 | 0.0009 | uM |
| 8-[(6-carbamoyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0009 | uM |
| 5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-pyrazolo[4,3-b]pyridine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0009 | uM |
| 3-chloro-5-[4-[(4-chlorophenyl)methyl]-5-methyl-1,2,4-triazol-3-yl]-2H-indazole | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0009 | uM |
| 8-[3-chloro-5-(1-methyl-2,2-dioxo-3H-2,1-benzothiazol-5-yl)-4-pyridinyl]-1-methyl-2,3,8-triazaspiro[4.5]dec-1-en-4-one | 1295765: Binding affinity to human CDK19 (1 to 502 amino acid residues)/Cyclin C (1 to 283 amino acid residues) by reporter displacement assay | ic50 | 0.0010 | uM |
| 1-[8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridin-2-yl]imidazolidin-2-one | 1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assay | ic50 | 0.0010 | uM |
| 8-[[6-(methylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0010 | uM |
| 8-[(6-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0010 | uM |
| 4-[2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridin-4-yl]oxybenzonitrile | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0010 | uM |
| 2-[4-(4-isoquinolin-4-ylphenyl)pyrazol-1-yl]-N,N-dimethylacetamide | 1541941: Inhibition of CDK8/CyclinC (unknown origin) | ic50 | 0.0010 | uM |
| 8-[3-chloro-5-(1-methylindazol-5-yl)-2H-pyrazolo[3,4-b]pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one | 1769449: Inhibition of tracer 236 binding to recombinant human His-tagged full length CDK8/Cyclin C expressed in baculovirus expression system by Lanthascreen assay | ic50 | 0.0010 | uM |
| 4-(4-methylpiperazin-1-yl)-N-[4-(2-methyl-3-propan-2-ylindazol-5-yl)pyrimidin-2-yl]quinolin-7-amine | 1771106: Inhibition of human CDK8/cyclin C incubated for 2 hrs by [gamma-33P]-ATP assay | ic50 | 0.0010 | uM |
| [5-amino-8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridin-2-yl]-(3-methoxyazetidin-1-yl)methanone | 1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assay | ic50 | 0.0011 | uM |
| 8-[[6-(2-ethoxyethylcarbamoyl)-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0011 | uM |
| 2-(2H-tetrazol-5-yl)-4-[4-(trifluoromethoxy)phenoxy]thieno[2,3-c]pyridine | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0011 | uM |
| 4-(4-chlorophenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0011 | uM |
| N-(4-propan-2-ylphenyl)-4-pyrazolo[1,5-b]pyridazin-3-ylpyrimidin-2-amine | 1921466: Inhibition of CDK8/Cyclin C (unknown origin) by LanthaScreen binding assay | ic50 | 0.0011 | uM |
| [(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl]-(3-methyl-2H-pyrazolo[4,3-b]pyridin-5-yl)methanone | 1315916: Inhibition of Alexa647 tracer binding to full length recombinant human His-tagged CDK8/cyclin C expressed in Baculovirus expression system preincubated for 20 mins followed by tracer addition and incubated in dark for 60 mins by FRET-based Lanthascreen assay | ic50 | 0.0013 | uM |
| 8-[[6-(2-methoxyethylcarbamoyl)-2-methyl-3-pyridinyl]oxy]-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474369: Inhibition of kinase tracer-236 binding to GST-tagged CDK19/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0013 | uM |
| 8-[3-chloro-5-[4-[1-(2-hydroxy-2-methylpropyl)pyrazol-4-yl]phenyl]-4-pyridinyl]-2,8-diazaspiro[4.5]decan-1-one | 1295765: Binding affinity to human CDK19 (1 to 502 amino acid residues)/Cyclin C (1 to 283 amino acid residues) by reporter displacement assay | ic50 | 0.0014 | uM |
| 4-[2-[6-(4-methylpiperazine-1-carbonyl)naphthalen-2-yl]ethylamino]quinoline-6-carbonitrile | 1825673: Binding affinity to kinase tracer 236 binding to His tagged recombinant human CDK8/cyclinC assessed as dissociation constant by TR FRET based assay | kd | 0.0014 | uM |
| [(2S)-2-(4-chlorophenyl)pyrrolidin-1-yl]-(3-methyl-2H-indazol-5-yl)methanone | 1315916: Inhibition of Alexa647 tracer binding to full length recombinant human His-tagged CDK8/cyclin C expressed in Baculovirus expression system preincubated for 20 mins followed by tracer addition and incubated in dark for 60 mins by FRET-based Lanthascreen assay | ic50 | 0.0014 | uM |
| 8-[4-(1-methylpyrazol-4-yl)phenyl]-1,6-naphthyridine-2-carboxamide | 1313396: Competitive binding affinity to full length His-tagged human recombinant CDK8/cyclin C expressed in baculovirus after 20 mins in presence of Alexa647 tracer by FRET assay | ic50 | 0.0015 | uM |
| 8-pyridin-3-yloxy-4,5-dihydrothieno[3,4-g][1,2]benzothiazole-6-carboxamide | 1474368: Inhibition of kinase tracer-236 binding to GST-tagged CDK8/CyclinC (unknown origin) after 60 mins by TR-FRET assay | ic50 | 0.0015 | uM |
| (E)-3-[4-(3H-benzimidazol-5-yl)-3-pyridinyl]-N-[4-(morpholin-4-ylmethyl)phenyl]prop-2-enamide | 1466029: Inhibition of kinase tracer 236 binding to full length N terminal GST-tagged human CDK8 (1 to 464 end residues) /CycC ( 1 to 283 end residues) expressed in baculovirus expression system after 60 min by TR-FRET assay | ic50 | 0.0015 | uM |
| 7-amino-4-(4-chlorophenoxy)thieno[2,3-c]pyridine-2-carboxamide | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0015 | uM |
| 5-[(5S)-5-(4-chlorophenyl)-6,7-dihydro-5H-pyrrolo[2,1-c][1,2,4]triazol-3-yl]-3-methyl-2H-pyrazolo[3,4-b]pyridine | 2030640: Inhibition of His tagged human recombinant CDK8/Cyclin C expressed in baculovirus expression system incubated for 15 mins by FRET-based LanthaScreen binding competition assay | ic50 | 0.0015 | uM |
| 4-(4-methylphenoxy)-2-(2H-tetrazol-5-yl)thieno[2,3-c]pyridine | 1299821: Inhibition of full length human recombinant His-tagged CDK8/Cyclin C expressed in baculovirus expression system by fluorescence polarization assay | ic50 | 0.0016 | uM |
| 1-methyl-8-[(2-methyl-3-pyridinyl)oxy]-4,5-dihydrothieno[3,4-g]indazole-6-carboxamide | 1613762: Displacement of Kinase tracer 236 from recombinant full-length human N-terminal GST-fused CDK8 (1 to 464 residues)/cyclin C (1 to 283 residues) expressed in baculovirus expression system after 60 mins by TR-FRET assay | ic50 | 0.0016 | uM |
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, decreases expression, affects cotreatment, increases abundance | 3 |
| usnic acid | affects cotreatment, decreases expression, increases expression | 2 |
| perfluorooctane sulfonic acid | decreases expression | 2 |
| Arsenic | increases expression, affects cotreatment, increases abundance | 2 |
| Calcitriol | decreases expression, increases expression | 2 |
| Nanotubes, Carbon | decreases expression, increases expression | 2 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| inecalcitol | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| bis-N,N-dimethylamino-2-(N-methylpyrrolyl)methyl cyclopentadienyl titanium (IV) | increases expression | 1 |
| Rosiglitazone | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone | decreases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Dihydroxyacetone | increases expression | 1 |
| Environmental Pollutants | affects expression | 1 |
| Flame Retardants | increases expression | 1 |
| Fluorouracil | decreases expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Metformin | affects cotreatment, decreases expression | 1 |
| Paraquat | increases expression | 1 |
| Parathion | increases expression | 1 |
| Piroxicam | decreases expression | 1 |
ChEMBL screening assays
226 unique, capped per target: 226 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5383245 | Binding | PROTAC activity at Cyclin C in human MDA-MB-468 cells assessed as degradation of Cyclin C incubated for 48 hrs by Western blotting analysis | Discovery of LL-K8-22: A Selective, Durable, and Small-Molecule Degrader of the CDK8-Cyclin C Complex. — J Med Chem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT00036231 | PHASE3 | TERMINATED | Synthetic Human Secretin in Children With Autism and Gastrointestinal Dysfunction |
| NCT00036244 | PHASE3 | COMPLETED | Synthetic Human Secretin in Children With Autism |
| NCT00065884 | PHASE3 | UNKNOWN | Valproate Response in Aggressive Autistic Adolescents |
| NCT00065962 | PHASE3 | COMPLETED | Secretin for the Treatment of Autism |
| NCT00252603 | PHASE3 | COMPLETED | Galantamine Versus Placebo in Childhood Autism |
| NCT00346736 | PHASE3 | COMPLETED | Use of Acupuncture In Children With Autistic Spectrum Disorder |
| NCT00352248 | PHASE3 | COMPLETED | Randomized Controlled Trial of Acupuncture Versus Sham Acupuncture in Autistic Spectrum Disorder |
| NCT00352352 | PHASE3 | COMPLETED | Use of Acupuncture In Children With Autistic Spectrum Disorder |
| NCT00355329 | PHASE3 | COMPLETED | Randomized Control Trial of Using Tongue Acupuncture in Autistic Spectrum Disorder Using PET Scan for Clinical Correlation |
| NCT00498173 | PHASE3 | COMPLETED | Effectiveness of Atomoxetine in Treating ADHD Symptoms in Children and Adolescents With Autism |
| NCT00541346 | PHASE3 | COMPLETED | A Pilot Study of Daytrana TM in Children With Autism Co-Morbid for Attention Deficit Hyperactivity Disorder (ADHD) Symptoms |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autism, CIC-rearranged sarcoma, erectile dysfunction