CCNO-DT

Summary

CCNO-DT (CCNO divergent transcript, HGNC:55543) is a long non-coding RNA gene on chromosome 5q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55543
Approved symbol	CCNO-DT
Name	CCNO divergent transcript
Location	5q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251307
Ensembl biotype	lncRNA
Entrez	121009647
RNAcentral	URS00026A1CEA — lncRNA, 911 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000506435, ENST00000749850, ENST00000749851, ENST00000749852, ENST00000749853, ENST00000749854, ENST00000749855, ENST00000749856, ENST00000749857, ENST00000749858, ENST00000749859

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506435 — 5 exons

Exon	Start	End
ENSE00002021802	55283770	55283828
ENSE00002057585	55279533	55279649
ENSE00002071193	55283028	55283152
ENSE00004093751	55294840	55295302
ENSE00004093756	55233913	55234040

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 82.38.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.38	gold quality
quadriceps femoris	UBERON:0001377	80.58	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	77.62	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.23	gold quality
right uterine tube	UBERON:0001302	77.08	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
colonic epithelium	UBERON:0000397	66.90	silver quality
bone marrow cell	CL:0002092	65.93	silver quality
body of pancreas	UBERON:0001150	65.04	gold quality
right testis	UBERON:0004534	64.57	gold quality
testis	UBERON:0000473	64.47	gold quality
bone marrow	UBERON:0002371	64.24	gold quality
left testis	UBERON:0004533	64.17	gold quality
thyroid gland	UBERON:0002046	63.11	gold quality
fallopian tube	UBERON:0003889	62.87	gold quality
left lobe of thyroid gland	UBERON:0001120	62.85	gold quality
stromal cell of endometrium	CL:0002255	62.09	gold quality
right lobe of thyroid gland	UBERON:0001119	62.03	gold quality
pancreas	UBERON:0001264	61.93	gold quality
thymus	UBERON:0002370	60.99	silver quality
endometrium	UBERON:0001295	60.91	gold quality
prefrontal cortex	UBERON:0000451	59.76	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.53	gold quality
skeletal muscle tissue	UBERON:0001134	59.18	silver quality
calcaneal tendon	UBERON:0003701	55.64	gold quality
body of stomach	UBERON:0001161	55.26	gold quality
leukocyte	CL:0000738	54.88	gold quality
stomach	UBERON:0000945	54.81	gold quality
muscle of leg	UBERON:0001383	54.72	gold quality
primary visual cortex	UBERON:0002436	54.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.