CCNQ
geneOn this page
Also known as CycM
Summary
CCNQ (cyclin Q, HGNC:28434) is a protein-coding gene on chromosome Xq28, encoding Cyclin-Q (Q8N1B3). Activating cyclin for the cyclin-associated kinase CDK10.
Mutations in this gene have been shown to cause an X-linked dominant STAR syndrome that typically manifests syndactyly, telecanthus and anogenital and renal malformations. The protein encoded by this gene contains a cyclin-box-fold domain which suggests it may have a role in controlling nuclear cell division cycles. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 92002 — RefSeq curated summary.
At a glance
- Gene–disease (curated): syndactyly-telecanthus-anogenital and renal malformations syndrome (Definitive, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 103 total — 6 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 60
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_152274
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28434 |
| Approved symbol | CCNQ |
| Name | cyclin Q |
| Location | Xq28 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CycM |
| Ensembl gene | ENSG00000262919 |
| Ensembl biotype | protein_coding |
| OMIM | 300708 |
| Entrez | 92002 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 10 protein_coding, 4 nonsense_mediated_decay
ENST00000429336, ENST00000440428, ENST00000482182, ENST00000576892, ENST00000614850, ENST00000614851, ENST00000620088, ENST00000621629, ENST00000621817, ENST00000875307, ENST00000875308, ENST00000919978, ENST00000951935, ENST00000951936
RefSeq mRNA: 2 — MANE Select: NM_152274
NM_001130997, NM_152274
CCDS: CCDS76054
Canonical transcript exons
ENST00000576892 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002633221 | 153598962 | 153599139 |
| ENSE00002997830 | 153596004 | 153596187 |
| ENSE00003101538 | 153592506 | 153592733 |
| ENSE00003220733 | 153594547 | 153594679 |
| ENSE00003726121 | 153587925 | 153588454 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 95.20.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.5439 / max 188.2359, expressed in 1813 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 200887 | 17.5439 | 1813 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tendon of biceps brachii | UBERON:0008188 | 95.20 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 92.32 | silver quality |
| myocardium | UBERON:0002349 | 92.26 | silver quality |
| prefrontal cortex | UBERON:0000451 | 92.25 | gold quality |
| heart left ventricle | UBERON:0002084 | 92.04 | gold quality |
| cardiac ventricle | UBERON:0002082 | 91.76 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 91.53 | gold quality |
| adenohypophysis | UBERON:0002196 | 91.40 | gold quality |
| gastrocnemius | UBERON:0001388 | 91.28 | gold quality |
| apex of heart | UBERON:0002098 | 91.11 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 91.05 | gold quality |
| medial globus pallidus | UBERON:0002477 | 90.99 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 90.90 | gold quality |
| hypothalamus | UBERON:0001898 | 90.89 | gold quality |
| muscle of leg | UBERON:0001383 | 90.54 | gold quality |
| tibialis anterior | UBERON:0001385 | 90.52 | silver quality |
| right frontal lobe | UBERON:0002810 | 90.52 | gold quality |
| pituitary gland | UBERON:0000007 | 90.15 | gold quality |
| amygdala | UBERON:0001876 | 90.04 | gold quality |
| spinal cord | UBERON:0002240 | 90.03 | gold quality |
| granulocyte | CL:0000094 | 89.97 | gold quality |
| heart | UBERON:0000948 | 89.96 | gold quality |
| globus pallidus | UBERON:0001875 | 89.76 | gold quality |
| right atrium auricular region | UBERON:0006631 | 89.69 | gold quality |
| substantia nigra | UBERON:0002038 | 89.51 | gold quality |
| cardiac atrium | UBERON:0002081 | 89.50 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 89.39 | gold quality |
| frontal cortex | UBERON:0001870 | 89.38 | gold quality |
| neocortex | UBERON:0001950 | 89.30 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 89.24 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 2.67 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
20 targeting CCNQ, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-8080 | 99.82 | 67.52 | 1342 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-4672 | 99.50 | 71.58 | 2893 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-4801 | 98.96 | 69.42 | 2096 |
| HSA-MIR-3124-3P | 98.87 | 68.95 | 2123 |
| HSA-MIR-6867-3P | 98.12 | 66.07 | 1305 |
| HSA-MIR-4691-3P | 98.11 | 66.83 | 1204 |
| HSA-MIR-7111-3P | 97.80 | 66.75 | 1467 |
| HSA-MIR-6514-3P | 97.52 | 66.50 | 808 |
| HSA-MIR-3126-3P | 97.17 | 66.51 | 468 |
Functional genomics
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 5)
- Mutations in the cyclin family member FAM58A cause an X-linked dominant disorder characterized by syndactyly, telecanthus and anogenital and renal malformations. (PMID:18297069)
- These ophthalmic findings are the first reported to our knowledge in association with STAR syndrome. The literature frequently demonstrates that patients with developmental anomalies often have ocular manifestations, warranting a full ophthalmic examination when the diagnosis of STAR syndrome has been made or is being considered. (PMID:26882209)
- this is the first occurrence of a nonsense variant in FAM58A described in individuals with STAR syndrome and the phenotype in this pedigree suggests that tethered cord and hearing loss are features of STAR syndrome. (PMID:28322501)
- Functional characterization of CDK10 and cyclin M truncated variants causing severe developmental disorders. (PMID:34369103)
- Functional characterization of the human Cdk10/Cyclin Q complex. (PMID:35291876)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ccnq | ENSDARG00000037537 |
| mus_musculus | Ccnq | ENSMUSG00000049489 |
| rattus_norvegicus | Ccnq | ENSRNOG00000022582 |
| drosophila_melanogaster | koko | FBGN0264816 |
| caenorhabditis_elegans | WBGENE00000507 | |
| caenorhabditis_elegans | WBGENE00000508 |
Paralogs (6): CCNT2 (ENSG00000082258), CCNK (ENSG00000090061), CCNT1 (ENSG00000129315), CCNH (ENSG00000134480), CCNL1 (ENSG00000163660), CCNL2 (ENSG00000221978)
Protein
Protein identifiers
Cyclin-Q — Q8N1B3 (reviewed: Q8N1B3)
Alternative names: CDK10-activating cyclin, Cyclin-M, Cyclin-related protein FAM58A
All UniProt accessions (7): Q8N1B3, A0A087WUL6, A0A087WY98, A0A087X0G9, A0A087X1W3, H7C3N1, K7EM37
UniProt curated annotations — full annotation on UniProt →
Function. Activating cyclin for the cyclin-associated kinase CDK10.
Subunit / interactions. Associates with CDK10 to promote its kinase activity. Interacts with SALL1.
Disease relevance. Toe syndactyly, telecanthus, and anogenital and renal malformations (STAR) [MIM:300707] A syndrome characterized by anal, genital and renal tract anomalies, facial dysmorphism and syndactyly. Features include anal stenosis, a rectovaginal fistula, clitoral hypertrophy, a pelvic right kidney, toe syndactyly, and telecanthus. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Silencing with siRNAs phenocopies CDK10 silencing in increasing c-Raf and in conferring tamoxifen resistance to breast cancer cells.
Similarity. Belongs to the cyclin family. Cyclin-like FAM58 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N1B3-1 | 1 | yes |
| Q8N1B3-2 | 2 |
RefSeq proteins (2): NP_001124469, NP_689487* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006671 | Cyclin_N | Domain |
| IPR013763 | Cyclin-like_dom | Domain |
| IPR036915 | Cyclin-like_sf | Homologous_superfamily |
| IPR043198 | Cyclin/Ssn8 | Family |
| IPR048053 | Cyclin-Q_second_cyclin_box | Domain |
| IPR048055 | Cyclin-Q_first_cyclin_box | Domain |
Pfam: PF00134, PF21797
UniProt features (6 total): chain 1, region of interest 1, compositionally biased region 1, modified residue 1, splice variant 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N1B3-F1 | 88.81 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 1
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 230 (showing top):
GOBP_CELL_CYCLE_PHASE_TRANSITION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_REGULATION_OF_CELL_CYCLE_G2_M_PHASE_TRANSITION, GOBP_REGULATION_OF_CELL_CYCLE, LIAO_METASTASIS, GOBP_CELL_CYCLE_G2_M_PHASE_TRANSITION, GOBP_REGULATION_OF_CELL_CYCLE_PHASE_TRANSITION, GOBP_REGULATION_OF_CELL_CYCLE_PROCESS, IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR, GOCC_TRANSFERASE_COMPLEX_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS, GOCC_TRANSFERASE_COMPLEX, GOCC_PROTEIN_KINASE_COMPLEX, OSF2_Q6, GOBP_CELL_CYCLE_PROCESS
GO Biological Process (2): regulation of transcription by RNA polymerase II (GO:0006357), regulation of cell cycle G2/M phase transition (GO:1902749)
GO Molecular Function (2): cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538), protein binding (GO:0005515)
GO Cellular Component (2): cyclin-dependent protein kinase holoenzyme complex (GO:0000307), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 1 |
| transcription by RNA polymerase II | 1 |
| cell cycle G2/M phase transition | 1 |
| regulation of cell cycle phase transition | 1 |
| cyclin-dependent protein serine/threonine kinase activity | 1 |
| cyclin-dependent protein kinase regulator activity | 1 |
| binding | 1 |
| serine/threonine protein kinase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
783 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CCNQ | SALL1 | Q9NSC2 | 816 |
| CCNQ | SALL4 | Q9UJQ4 | 785 |
| CCNQ | CDK10 | Q15131 | 776 |
| CCNQ | FLNA | P21333 | 582 |
| CCNQ | CT47B1 | P0C2W7 | 571 |
| CCNQ | DPY19L4 | Q7Z388 | 535 |
| CCNQ | TMEM9B | Q9NQ34 | 507 |
| CCNQ | ARGLU1 | Q9NWB6 | 499 |
| CCNQ | NOC4L | Q9BVI4 | 493 |
| CCNQ | VWA7 | Q9Y334 | 492 |
| CCNQ | MECP2 | P51608 | 483 |
| CCNQ | GK5 | Q6ZS86 | 477 |
| CCNQ | SLC45A1 | Q9Y2W3 | 475 |
| CCNQ | LRRC3 | Q9BY71 | 462 |
| CCNQ | KCNK17 | Q96T54 | 462 |
| CCNQ | HABP4 | Q5JVS0 | 462 |
IntAct
17 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCNQ | CDK10 | psi-mi:“MI:0915”(physical association) | 0.640 |
| CCNQ | CDK10 | psi-mi:“MI:0407”(direct interaction) | 0.640 |
| CCNQ | ETS2 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| CCNQ | CDK10 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCNQ | CDK1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CCNQ | CDK3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CCNQ | GPR37 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CCNQ | PTPN5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CCNQ | UBB | psi-mi:“MI:0914”(association) | 0.350 |
| TTC14 | AMPD3 | psi-mi:“MI:0914”(association) | 0.350 |
| CCNQ | DDB2 | psi-mi:“MI:0914”(association) | 0.350 |
| ARGLU1 | PIAS2 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (25): UBB (Affinity Capture-MS), FUS (Affinity Capture-MS), BIRC6 (Affinity Capture-MS), MYH14 (Affinity Capture-MS), EIF4E2 (Affinity Capture-MS), CPSF7 (Affinity Capture-MS), TAX1BP1 (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), FAM58A (Affinity Capture-MS), BIRC6 (Affinity Capture-MS)
ESM2 similar proteins: A0FKG7, A0JN39, A1C7R6, D2SW95, P25008, P51946, P51947, P53618, P91926, P93411, Q02384, Q07889, Q07890, Q0CV29, Q10D80, Q16JA2, Q1EAW8, Q29AI1, Q29N38, Q2UDB2, Q32PW3, Q3SX43, Q3UGF1, Q3ZBL9, Q4R7U4, Q4WZT9, Q5BBA8, Q5R922, Q5ZIA5, Q5ZJJ8, Q61458, Q62245, Q63486, Q66HV4, Q6NRC7, Q7L523, Q7QB13, Q7QG73, Q80X95, Q8C8N2
Diamond homologs: Q4QQW5, Q503D6, Q5I0H5, Q5RD50, Q5ZJP9, Q6NRK9, Q7ZVX0, Q8N1B3, Q8QZR8, Q8RWV3, Q9AS36, Q9JJA7, O74627, Q52KE7, Q5BKF8, Q6GN15, Q96S94, Q9C8P7, Q9R1Q2, Q9UK58, F1QMB9, G5EBX3, O75909, O88874, O94612, O96433, Q2QQS5, Q2RAC5, Q56YF8, Q6T8E9, Q8GYM6, Q9FKE6, Q9XT26, P24863, P39947, P55168, Q28F72, Q3ZCK5, Q4KLA0, Q62447
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
103 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 3 |
| Uncertain significance | 20 |
| Likely benign | 17 |
| Benign | 26 |
Top pathogenic / likely-pathogenic (9)
| Variant ID | HGVS | Classification |
|---|---|---|
| 10672 | NC_000023.11:g.153585471_153589719del | Pathogenic |
| 10673 | NM_152274.5(CCNQ):c.657+1G>A | Pathogenic |
| 10674 | NM_152274.5(CCNQ):c.303dup (p.Asn102Ter) | Pathogenic |
| 10675 | NM_152274.5(CCNQ):c.658-1G>A | Pathogenic |
| 3246906 | NC_000023.10:g.(?152853823)(152853932_?)del | Pathogenic |
| 932643 | NM_152274.5(CCNQ):c.655C>T (p.Gln219Ter) | Pathogenic |
| 1684282 | NM_152274.5(CCNQ):c.651G>A (p.Trp217Ter) | Likely pathogenic |
| 382099 | NM_152274.5(CCNQ):c.616G>T (p.Glu206Ter) | Likely pathogenic |
| 395446 | GRCh37/hg19 Xq28(chrX:152864415-152878922)x1 | Likely pathogenic |
SpliceAI
1176 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:153594542:TGTA:T | donor_loss | 1.0000 |
| X:153594543:GTACC:G | donor_loss | 1.0000 |
| X:153594544:TAC:T | donor_loss | 1.0000 |
| X:153594546:CCTT:C | donor_loss | 1.0000 |
| X:153594680:C:CG | acceptor_loss | 1.0000 |
| X:153594681:T:C | acceptor_loss | 1.0000 |
| X:153595998:CATTA:C | donor_loss | 1.0000 |
| X:153595999:ATTAC:A | donor_loss | 1.0000 |
| X:153596000:TTAC:T | donor_loss | 1.0000 |
| X:153596001:TA:T | donor_loss | 1.0000 |
| X:153596003:C:CT | donor_loss | 1.0000 |
| X:153596184:ACAC:A | acceptor_gain | 1.0000 |
| X:153596185:CAC:C | acceptor_gain | 1.0000 |
| X:153596185:CACC:C | acceptor_gain | 1.0000 |
| X:153596186:AC:A | acceptor_gain | 1.0000 |
| X:153596187:CC:C | acceptor_gain | 1.0000 |
| X:153596188:C:CA | acceptor_loss | 1.0000 |
| X:153596188:C:CC | acceptor_gain | 1.0000 |
| X:153596189:T:A | acceptor_loss | 1.0000 |
| X:153592500:CCTCA:C | donor_loss | 0.9900 |
| X:153592502:TCAC:T | donor_loss | 0.9900 |
| X:153592503:CAC:C | donor_loss | 0.9900 |
| X:153592504:ACC:A | donor_loss | 0.9900 |
| X:153592505:C:T | donor_loss | 0.9900 |
| X:153592729:AGGTA:A | acceptor_gain | 0.9900 |
| X:153592730:GGTA:G | acceptor_gain | 0.9900 |
| X:153592731:GTA:G | acceptor_gain | 0.9900 |
| X:153592732:TA:T | acceptor_gain | 0.9900 |
| X:153592734:C:CC | acceptor_gain | 0.9900 |
| X:153594605:CA:C | donor_gain | 0.9900 |
AlphaMissense
1618 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:153594574:G:C | F134L | 1.000 |
| X:153594574:G:T | F134L | 1.000 |
| X:153594576:A:G | F134L | 1.000 |
| X:153594576:A:T | F134I | 0.999 |
| X:153596054:T:A | K82N | 0.999 |
| X:153596054:T:G | K82N | 0.999 |
| X:153596082:G:T | A73D | 0.999 |
| X:153596148:G:T | A51D | 0.999 |
| X:153592514:A:G | W217R | 0.998 |
| X:153592514:A:T | W217R | 0.998 |
| X:153592588:G:T | A192D | 0.998 |
| X:153594575:A:G | F134S | 0.998 |
| X:153594576:A:C | F134V | 0.998 |
| X:153594587:C:A | R130I | 0.998 |
| X:153594590:A:G | L129P | 0.998 |
| X:153594599:A:G | L126P | 0.998 |
| X:153594602:T:A | E125V | 0.998 |
| X:153596055:T:A | K82I | 0.998 |
| X:153596061:G:T | A80D | 0.998 |
| X:153596187:C:T | G38D | 0.998 |
| X:153588402:A:G | L237P | 0.997 |
| X:153592632:G:C | S177R | 0.997 |
| X:153592632:G:T | S177R | 0.997 |
| X:153592634:T:G | S177R | 0.997 |
| X:153592642:A:G | L174P | 0.997 |
| X:153592654:G:T | A170D | 0.997 |
| X:153592729:A:G | L145P | 0.997 |
| X:153594623:C:G | R118P | 0.997 |
| X:153596058:C:T | G81D | 0.997 |
| X:153596062:C:G | A80P | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000138222 (X:153600725 T>C), RS1000479562 (X:153601016 G>A,C), RS1000863489 (X:153587636 C>T), RS1000877975 (X:153594834 T>C), RS1001551198 (X:153591789 G>A), RS1001646018 (X:153591507 C>T), RS1001760172 (X:153598714 C>G), RS1002935836 (X:153594957 T>A), RS1003226144 (X:153590232 A>T), RS1003319989 (X:153589886 C>T), RS1003480692 (X:153596508 C>G,T), RS1003834433 (X:153596795 T>C), RS1004043178 (X:153590582 G>A,C), RS1004198215 (X:153597367 A>T), RS1004251970 (X:153596906 G>T)
Disease associations
OMIM: gene MIM:300708 | disease phenotypes: MIM:300707
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| syndactyly-telecanthus-anogenital and renal malformations syndrome | Definitive | X-linked |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| syndactyly-telecanthus-anogenital and renal malformations syndrome | Moderate | XL |
Mondo (3): syndactyly-telecanthus-anogenital and renal malformations syndrome (MONDO:0010408), neutropenia (MONDO:0001475), lymphopenia (MONDO:0003783)
Orphanet (1): Syndactyly-telecanthus-anogenital and renal malformations syndrome (Orphanet:140952)
HPO phenotypes
60 total (30 of 60 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000066 | Labial hypoplasia |
| HP:0000072 | Hydroureter |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000083 | Renal insufficiency |
| HP:0000085 | Horseshoe kidney |
| HP:0000086 | Ectopic kidney |
| HP:0000104 | Renal agenesis |
| HP:0000125 | Pelvic kidney |
| HP:0000126 | Hydronephrosis |
| HP:0000143 | Rectovaginal fistula |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000337 | Broad forehead |
| HP:0000369 | Low-set ears |
| HP:0000394 | Lop ear |
| HP:0000414 | Bulbous nose |
| HP:0000431 | Wide nasal bridge |
| HP:0000445 | Wide nose |
| HP:0000455 | Broad nasal tip |
| HP:0000460 | Narrow nose |
| HP:0000506 | Telecanthus |
| HP:0000545 | Myopia |
| HP:0000556 | Retinal dystrophy |
| HP:0000625 | Eyelid coloboma |
| HP:0000813 | Bicornuate uterus |
| HP:0000954 | Single transverse palmar crease |
| HP:0001153 | Septate vagina |
| HP:0001250 | Seizure |
| HP:0001363 | Craniosynostosis |
| HP:0001382 | Joint hypermobility |
| HP:0001423 | X-linked dominant inheritance |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001666_7 | Type 2 diabetes | 2.000000e-09 |
| GCST004904_13 | Body mass index | 1.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008231 | Lymphopenia | C15.378.243.750.605; C15.378.553.546.605; C20.673.627 |
| D009503 | Neutropenia | C15.378.243.750.184.564; C15.378.553.546.184.564 |
| C567475 | Toe Syndactyly, Telecanthus, and Anogenital and Renal Malformations (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| pirinixic acid | increases activity, affects binding, decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| K 7174 | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | decreases expression, increases response to substance | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Doxorubicin | increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Tretinoin | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Okadaic Acid | increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Vitamin K 3 | affects expression | 1 |
Clinical trials (associated diseases)
199 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00030758 | PHASE4 | UNKNOWN | Filgrastim or Pegfilgrastim in Preventing Neutropenia in Women Receiving Chemotherapy Following Surgery for Breast Cancer |
| NCT00125723 | PHASE4 | COMPLETED | FIRST - Study of Pegfilgrastim Administered in the First and Subsequent Cycles of Myelosuppressive Chemotherapy |
| NCT00194857 | PHASE4 | TERMINATED | Treatment of Anemia and Neutropenia in HIV/HCV Coinfected Patients Treated With Pegylated Interferon and Ribavirin |
| NCT00257790 | PHASE4 | COMPLETED | The Tobramycin Study |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00686543 | PHASE4 | COMPLETED | Oral Posaconazole in High Risk Patients With Gastrointestinal Dysfunction (Study P05115) |
| NCT01086878 | PHASE4 | COMPLETED | Safety of Cotrimoxazole in HIV- and HAART-exposed Infants |
| NCT01114165 | PHASE4 | COMPLETED | Value of the LightCycler® SeptiFast Test MGRADE for the Pathogen Detection in Neutropenic Hematological Patients |
| NCT01135589 | PHASE4 | UNKNOWN | Micafungin Prevention Study for Fungal Disease in Child Receiving Allogenic Hematopoietic Stem Cell Transplantation |
| NCT01571518 | PHASE4 | UNKNOWN | Prevention of Neutropenia After Using G-CSF With TAC Chemotherapy |
| NCT02621905 | PHASE4 | COMPLETED | Steady-State Comparative Bioavailability Study in Prophylaxis Patients of Lozanoc® 50 mg With Sporanox® 100 mg |
| NCT02967341 | PHASE4 | UNKNOWN | Blood Draw Validation for Ciprofloxacin Pharmacokinetic Research in Pediatric Cancer Patients |
| NCT04009941 | PHASE4 | COMPLETED | Efficacy and Safety of 4.5mg PEG-rhG-CSF Per Cycle in Preventing Neutropenia After Intensive Chemotherapy for Breast Cancer |
| NCT04904614 | PHASE4 | COMPLETED | Letermovir Use in Heart Transplant Recipients |
| NCT05626530 | PHASE4 | RECRUITING | Letermovir for Secondary Prophylaxis in Solid Organ Transplant Recipients |
| NCT06145321 | PHASE4 | ACTIVE_NOT_RECRUITING | Continuous Versus Bolus Administration of G-CSF in Children With Cancer |
| NCT00001338 | PHASE3 | COMPLETED | A Prospective, Randomized, Phase III Trial of FLAC (5-Fluorouracil, Leucovorin, Adriamycin, Cytoxan) Chemotherapy With GM-CSF (Granulocyte-Macrophage Colony-Stimulating Factor) Versus PIXY 321 in Advanced Breast Cancer |
| NCT00001646 | PHASE3 | COMPLETED | Voriconazole vs. Amphotericin B in the Treatment of Invasive Aspergillosis |
| NCT00002658 | PHASE3 | UNKNOWN | Combination Chemotherapy, Biological Therapy, and Bone Marrow Transplantation in Treating Patients With Acute Myeloid Leukemia |
| NCT00002719 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without G-CSF in Treating Older Patients With Acute Myeloid Leukemia |
| NCT00003739 | PHASE3 | COMPLETED | Antibiotic Therapy With or Without G-CSF in Treating Children With Neutropenia and Fever Caused by Chemotherapy |
| NCT00020865 | PHASE3 | UNKNOWN | Levofloxacin Compared With Cefepime in Treating Cancer Patients With Fever and Neutropenia |
| NCT00035594 | PHASE3 | COMPLETED | Pegfilgrastim as Support to Advanced Breast Cancer Patients Receiving Chemotherapy |
| NCT00044486 | PHASE3 | COMPLETED | Prophylaxis Trial of Posaconazole Versus Standard Azole Therapy for Neutropenic Patients (Study P01899) |
| NCT00107081 | PHASE3 | TERMINATED | Low-risk Fever and Neutropenia in Children With Cancer: Safety and Efficacy of Oral Antibiotics in an Outpatient Setting |
| NCT00445497 | PHASE3 | UNKNOWN | Early Hospital Discharge or Standard Inpatient Care in Cancer Patients Receiving Antibiotics for Febrile Neutropenia |
| NCT00529282 | PHASE3 | TERMINATED | A Study of Ceftobiprole in Patients With Fever and Neutropenia. |
| NCT00627393 | PHASE3 | COMPLETED | Safety and Effectiveness of Granulocyte Transfusions in Resolving Infection in People With Neutropenia (The RING Study) |
| NCT00770172 | PHASE3 | COMPLETED | G-CSF in Preventing Neutropenia in Patients With Solid Tumors Who Are Receiving Chemotherapy |
| NCT00784368 | PHASE3 | COMPLETED | A Pharmacokinetic Study of JK1211(Itraconazole [Itrizole]) Oral Solution in Participants With Deep Mycosis and Those With Febrile Neutropenia Suspected of Fungal Infection |
| NCT00806351 | PHASE3 | TERMINATED | An Evaluation Of The Effectiveness And Safety Of Anidulafungin Compared To Caspofungin For The Treatment Of Serious Fungal Infection Due To Candida In Patients With A Dysfunctional Immune System |
| NCT00911170 | PHASE3 | COMPLETED | PAVES: Pegfilgrastim Anti-vascular Endothelial Growth Factor (VEGF) Evaluation Study |
| NCT01307579 | PHASE3 | COMPLETED | Caspofungin Versus Fluconazole in Preventing Invasive Fungal Infections (IFI) in Patients Undergoing Chemotherapy for Acute Myeloid Leukemia |
| NCT01371656 | PHASE3 | COMPLETED | Levofloxacin in Preventing Infection in Young Patients With Acute Leukemia Receiving Chemotherapy or Undergoing Stem Cell Transplantation |
| NCT01560195 | PHASE3 | UNKNOWN | A Study of Pegylated rhG-CSF as Support to Advanced Non-Small-Cell Lung Cancer (NSCLC) Patients Receiving Chemotherapy Receiving Chemotherapy |
| NCT01611051 | PHASE3 | COMPLETED | A Study Comparing Pegylated rhG-CSF and rhG-CSF as Support to Breast Cancer Patients Receiving Chemotherapy |
| NCT02238873 | PHASE3 | UNKNOWN | Pegfilgrastim on Day +3 Compared to Day +1 After Salvage Chemotherapy for Patients With Refractory or Relapsed Aggressive Lymphoma |
| NCT02414581 | PHASE3 | COMPLETED | Mouthwash With Chlorhexidine 0.12%/Ethyl Alcohol 7% Compared to Ethyl Alcohol 7% |
| NCT02643420 | PHASE3 | COMPLETED | SPI-2012 vs Pegfilgrastim in the Management of Neutropenia in Participants With Breast Cancer With Docetaxel and Cyclophosphamide (ADVANCE) |
| NCT02872103 | PHASE3 | COMPLETED | Placebo-controlled Trial of F-627 in Women With Breast Cancer Receiving Myelotoxic Chemotherapy |
Related Atlas pages
- Associated diseases: syndactyly-telecanthus-anogenital and renal malformations syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): lymphopenia, neutropenia, syndactyly-telecanthus-anogenital and renal malformations syndrome