CCNT2-AS1

Summary

CCNT2-AS1 (CCNT2 antisense RNA 1, HGNC:40130) is a long non-coding RNA gene on chromosome 2q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40130
Approved symbol	CCNT2-AS1
Name	CCNT2 antisense RNA 1
Location	2q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224043
Ensembl biotype	lncRNA
Entrez	100129961
RNAcentral	URS000075EB2B — lncRNA, 1422 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000392929, ENST00000413962, ENST00000428857, ENST00000668300, ENST00000670642, ENST00000747809, ENST00000747810

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000392929 — 4 exons

Exon	Start	End
ENSE00001664367	134735464	134735581
ENSE00001730758	134918563	134918670
ENSE00001806735	134867520	134867739
ENSE00003459934	134868944	134869041

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 84.10.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.6095 / max 40.7858, expressed in 1279 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
30756	1.7369	1028
30755	0.8726	471

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.10	gold quality
left testis	UBERON:0004533	78.60	gold quality
right testis	UBERON:0004534	77.76	gold quality
left ovary	UBERON:0002119	76.75	gold quality
ganglionic eminence	UBERON:0004023	76.72	gold quality
testis	UBERON:0000473	76.12	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	76.01	gold quality
right ovary	UBERON:0002118	74.69	gold quality
islet of Langerhans	UBERON:0000006	74.66	gold quality
stromal cell of endometrium	CL:0002255	74.19	gold quality
cerebellar hemisphere	UBERON:0002245	73.94	gold quality
cerebellar cortex	UBERON:0002129	73.87	gold quality
calcaneal tendon	UBERON:0003701	73.85	gold quality
cortical plate	UBERON:0005343	73.70	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.61	gold quality
spinal cord	UBERON:0002240	72.77	gold quality
bone marrow cell	CL:0002092	72.66	gold quality
cerebellum	UBERON:0002037	72.38	gold quality
pancreas	UBERON:0001264	72.11	gold quality
body of pancreas	UBERON:0001150	72.04	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.60	gold quality
colonic epithelium	UBERON:0000397	71.43	gold quality
granulocyte	CL:0000094	71.41	gold quality
ovary	UBERON:0000992	71.11	gold quality
mucosa of stomach	UBERON:0001199	70.55	gold quality
ventricular zone	UBERON:0003053	70.29	gold quality
left lobe of thyroid gland	UBERON:0001120	70.16	gold quality
adenohypophysis	UBERON:0002196	70.01	gold quality
endocervix	UBERON:0000458	69.57	gold quality
leukocyte	CL:0000738	69.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.