CCNY-AS1

Summary

CCNY-AS1 (CCNY antisense RNA 1, HGNC:55252) is a long non-coding RNA gene on chromosome 10p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55252
Approved symbol	CCNY-AS1
Name	CCNY antisense RNA 1
Location	10p11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL117336.3
Ensembl gene	ENSG00000271335
Ensembl biotype	lncRNA
Entrez	118732302
RNAcentral	URS00026A241C — lncRNA, 1611 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000439198, ENST00000603160, ENST00000605499, ENST00000659251, ENST00000715770, ENST00000811022, ENST00000811023, ENST00000811024, ENST00000811025, ENST00000811026, ENST00000811027, ENST00000811028, ENST00000811029, ENST00000811030, ENST00000811031, ENST00000811032, ENST00000811033, ENST00000811034, ENST00000811035

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000439198 — 2 exons

Exon	Start	End
ENSE00001606873	35230426	35230598
ENSE00001728450	35219894	35220100

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 81.23.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	81.23	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.76	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.65	silver quality
nucleus accumbens	UBERON:0001882	77.37	gold quality
adenohypophysis	UBERON:0002196	77.31	gold quality
pituitary gland	UBERON:0000007	76.98	gold quality
right uterine tube	UBERON:0001302	76.98	gold quality
cerebellar cortex	UBERON:0002129	76.88	gold quality
cerebellar hemisphere	UBERON:0002245	76.86	gold quality
primary visual cortex	UBERON:0002436	76.86	gold quality
cerebellum	UBERON:0002037	76.85	gold quality
right hemisphere of cerebellum	UBERON:0014890	76.58	gold quality
right lobe of thyroid gland	UBERON:0001119	76.37	gold quality
cortex of kidney	UBERON:0001225	76.25	gold quality
caudate nucleus	UBERON:0001873	76.05	gold quality
putamen	UBERON:0001874	75.88	gold quality
right ovary	UBERON:0002118	75.83	gold quality
left ovary	UBERON:0002119	75.57	gold quality
superior frontal gyrus	UBERON:0002661	75.43	gold quality
ovary	UBERON:0000992	74.99	gold quality
muscle layer of sigmoid colon	UBERON:0035805	74.63	gold quality
Ammon’s horn	UBERON:0001954	74.56	gold quality
body of uterus	UBERON:0009853	74.49	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.37	gold quality
myometrium	UBERON:0001296	74.35	gold quality
thyroid gland	UBERON:0002046	74.24	gold quality
endometrium	UBERON:0001295	74.18	gold quality
brain	UBERON:0000955	74.14	gold quality
left lobe of thyroid gland	UBERON:0001120	74.00	gold quality
stromal cell of endometrium	CL:0002255	73.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.