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CCR5

gene
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Also known as CKR-5CC-CKR-5CKR5CD195IDDM22

Summary

CCR5 (C-C motif chemokine receptor 5, HGNC:1606) is a protein-coding gene on chromosome 3p21.31, encoding C-C chemokine receptor type 5 (P51681). Receptor for a number of inflammatory CC-chemokines including CCL3/MIP-1-alpha, CCL4/MIP-1-beta and RANTES and subsequently transduces a signal by increasing the intracellular calcium ion level.

This gene encodes a member of the beta chemokine receptor family, which is predicted to be a seven transmembrane protein similar to G protein-coupled receptors. This protein is expressed by T cells and macrophages, and is known to be an important co-receptor for macrophage-tropic virus, including HIV, to enter host cells. Defective alleles of this gene have been associated with the HIV infection resistance. The ligands of this receptor include monocyte chemoattractant protein 2 (MCP-2), macrophage inflammatory protein 1 alpha (MIP-1 alpha), macrophage inflammatory protein 1 beta (MIP-1 beta) and regulated on activation normal T expressed and secreted protein (RANTES). Expression of this gene was also detected in a promyeloblastic cell line, suggesting that this protein may play a role in granulocyte lineage proliferation and differentiation. This gene is located at the chemokine receptor gene cluster region. An allelic polymorphism in this gene results in both functional and non-functional alleles; the reference genome represents the functional allele. Two transcript variants encoding the same protein have been found for this gene.

Source: NCBI Gene 1234 — RefSeq curated summary.

At a glance

  • GWAS associations: 9
  • Clinical variants (ClinVar): 46 total
  • GTEx eGene: eQTL in 16 tissues, sQTL in 0 (q < 0.05)
  • Drug target: yes — 12 curated mechanism-of-action drugs; 15 molecules with ChEMBL bioactivity (top 2% of genes corpus-wide)
  • Approved drugs (ChEMBL mechanism of action): 1 — Maraviroc
  • Constraint (gnomAD): pLI 0.18 (intermediate), LOEUF 1.59 (unconstrained)
  • MANE Select transcript: NM_001394783
  • Interaction hub: 3,150 STRING partners (top 2% of genes corpus-wide)

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1606
Approved symbolCCR5
NameC-C motif chemokine receptor 5
Location3p21.31
Locus typegene with protein product
StatusApproved
AliasesCKR-5, CC-CKR-5, CKR5, CD195, IDDM22
Ensembl geneENSG00000160791
Ensembl biotypeprotein_coding
OMIM601373
Entrez1234

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 protein_coding

MANE Select: ENST00000292303

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1

ENST00000292303, ENST00000445772, ENST00001142998

RefSeq mRNA: 3 — MANE Select: NM_001394783 NM_000579, NM_001100168, NM_001394783

CCDS: CCDS2739

Canonical transcript exons

ENST00000292303 — 2 exons

ExonStartEnd
ENSE000010545084637289246376206
ENSE000010786264637094646370988

Expression profiles

Bgee: expression breadth ubiquitous, 194 present calls, max score 89.38.

FANTOM5 (CAGE): breadth broad, TPM avg 6.3603 / max 277.3082, expressed in 355 samples.

Highest expression (Bgee): type B pancreatic cell, olfactory bulb, epithelium of nasopharynx, nasopharynx, diaphragm.

Genetic regulation across tissues (GTEx eQTL / sQTL)

CCR5 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 16 tissues and its splicing (sQTL) in 0 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

16 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Whole Bloodeqtl2.0e-08-0.243:46318831:T:C
Colon Sigmoideqtl5.8e-04-0.403:46154389:A:G
Skin Sun Exposed Lower legeqtl8.4e-04+0.173:46235387:T:A
Lungeqtl9.1e-04-0.153:46439310:A:G
Brain Hippocampuseqtl3.4e-03-0.263:46369003:A:C
Adipose Visceral Omentumeqtl6.4e-03-0.173:46304382:C:G
Prostateeqtl1.4e-02+0.233:46309225:T:C
Stomacheqtl1.5e-02-0.243:46098510:A:G
Nerve Tibialeqtl1.7e-02-0.123:46406413:G:A
Adipose Subcutaneouseqtl2.4e-02-0.203:46220620:C:T
Brain Nucleus accumbens basal gangliaeqtl2.6e-02+0.203:46418602:C:T
Brain Substantia nigraeqtl2.8e-02-0.233:46408579:T:A
Breast Mammary Tissueeqtl2.9e-02-0.163:46417999:C:T
Skin Not Sun Exposed Suprapubiceqtl3.7e-02+0.153:46247622:G:A
Esophagus Musculariseqtl3.9e-02-0.213:46175405:G:C
Esophagus Mucosaeqtl4.2e-02-0.293:46747140:A:C

FANTOM5 promoters

2 alternative TSS:

Promoter IDTPM avgSamples expressed
364514.6010327
364501.7592253

Top tissues by expression

showing 100 of 282 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
type B pancreatic cellCL:000016989.38gold quality
olfactory bulbUBERON:000226489.07gold quality
epithelium of nasopharynxUBERON:000195187.90gold quality
nasopharynxUBERON:000172887.89gold quality
diaphragmUBERON:000110387.25gold quality
parietal pleuraUBERON:000240085.81gold quality
pleuraUBERON:000097785.74gold quality
visceral pleuraUBERON:000240185.28gold quality
palpebral conjunctivaUBERON:000181284.50gold quality
granulocyteCL:000009484.48gold quality
germinal epithelium of ovaryUBERON:000130483.66gold quality
mucosa of urinary bladderUBERON:000125983.58silver quality
vermiform appendixUBERON:000115483.43gold quality
superficial temporal arteryUBERON:000161482.00gold quality
jejunal mucosaUBERON:000039981.66gold quality
lymph nodeUBERON:000002981.43gold quality
leukocyteCL:000073880.23gold quality
left ventricle myocardiumUBERON:000656680.17gold quality
caecumUBERON:000115379.85gold quality
deciduaUBERON:000245079.82gold quality
mononuclear cellCL:000084279.54gold quality
monocyteCL:000057679.25gold quality
epithelial cell of pancreasCL:000008378.61silver quality
amniotic fluidUBERON:000017378.58gold quality
oral cavityUBERON:000016778.45gold quality
cardiac muscle of right atriumUBERON:000337978.31gold quality
bloodUBERON:000017878.19gold quality
eyeUBERON:000097077.96gold quality
myocardiumUBERON:000234977.27gold quality
colonic epitheliumUBERON:000039776.61gold quality
gall bladderUBERON:000211075.21gold quality
esophagus squamous epitheliumUBERON:000692074.96gold quality
spleenUBERON:000210674.38gold quality
ileal mucosaUBERON:000033174.07silver quality
thymusUBERON:000237073.93silver quality
squamous epitheliumUBERON:000691473.58silver quality
mucosa of sigmoid colonUBERON:000499373.14gold quality
smooth muscle tissueUBERON:000113572.95gold quality
duodenumUBERON:000211472.73gold quality
rectumUBERON:000105272.61gold quality
mucosa of paranasal sinusUBERON:000503072.03silver quality
jejunumUBERON:000211571.81gold quality
colonic mucosaUBERON:000031771.71gold quality
epithelium of esophagusUBERON:000197671.44silver quality
bone marrow cellCL:000209271.29silver quality
gingivaUBERON:000182870.91silver quality
gingival epitheliumUBERON:000194970.75gold quality
cervix squamous epitheliumUBERON:000692270.18gold quality
tonsilUBERON:000237270.00gold quality
bone marrowUBERON:000237169.82gold quality
nasal cavity epitheliumUBERON:000538469.50silver quality
cardia of stomachUBERON:000116269.48gold quality
vastus lateralisUBERON:000137969.20gold quality
lungUBERON:000204869.07gold quality
mammary ductUBERON:000176568.90silver quality
quadriceps femorisUBERON:000137768.74gold quality
epithelium of bronchusUBERON:000203168.62silver quality
bronchusUBERON:000218568.46silver quality
epithelium of mammary glandUBERON:000324468.46silver quality
mammalian vulvaUBERON:000099767.81gold quality
tibiaUBERON:000097967.69silver quality
cervix epitheliumUBERON:000480167.69silver quality
right coronary arteryUBERON:000162567.52gold quality
tongue squamous epitheliumUBERON:000691967.36gold quality
urinary bladderUBERON:000125567.07gold quality
bronchial epithelial cellCL:000232866.48silver quality
small intestineUBERON:000210866.24gold quality
upper lobe of lungUBERON:000894865.78gold quality
tracheaUBERON:000312665.74gold quality
upper lobe of left lungUBERON:000895265.73gold quality
skin of hipUBERON:000155465.43silver quality
small intestine Peyer’s patchUBERON:000345465.35gold quality
endometriumUBERON:000129565.24gold quality
layer of synovial tissueUBERON:000761665.04silver quality
pylorusUBERON:000116664.98gold quality
thoracic mammary glandUBERON:000520064.96gold quality
mammary glandUBERON:000191164.88gold quality
nephron tubuleUBERON:000123164.58gold quality
caput epididymisUBERON:000435864.39gold quality
dorsal plus ventral thalamusUBERON:000189764.31gold quality
cauda epididymisUBERON:000436064.24silver quality
CA1 field of hippocampusUBERON:000388164.12gold quality
corpus epididymisUBERON:000435964.12silver quality
trabecular bone tissueUBERON:000248363.81silver quality
tongueUBERON:000172363.53silver quality
hair follicleUBERON:000207363.49gold quality
metanephric glomerulusUBERON:000473663.44gold quality
trigeminal ganglionUBERON:000167563.37silver quality
body of tongueUBERON:001187663.37gold quality
superior surface of tongueUBERON:000737163.35silver quality
cranial nerve IIUBERON:000094163.32silver quality
nasal cavity mucosaUBERON:000182663.31gold quality
kidney epitheliumUBERON:000481963.21gold quality
mucosa of transverse colonUBERON:000499163.20gold quality
placentaUBERON:000198763.08gold quality
saphenous veinUBERON:000731862.97gold quality
fallopian tubeUBERON:000388962.78gold quality
ventral tegmental areaUBERON:000269162.74gold quality
pharyngeal mucosaUBERON:000035562.54gold quality
gluteal muscleUBERON:000200062.48gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes4.72

HPA expression

RNA tissue specificity: Tissue enhanced

showing 60 of 73 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPM
Appendixtissue14.5
Lymph nodetissue13.8
Spinal cordtissue13.4
Substantia nigratissue12.5
Hypothalamustissue11.6
Medulla oblongatatissue11.1
Periaqueductal graytissue11.1
Corpus callosumtissue11.0
Midbraintissue10.0
Ponstissue9.7
Septumtissue9.4
Spleentissue9.1
Tonsiltissue9.1
Thalamustissue8.3
Putamentissue7.8
Superior colliculitissue7.6
Lungtissue7.1
Ventral pallidumtissue6.9
Stomach 1tissue6.6
Amygdalatissue6.5
Hippocampal formationtissue6.5
Small intestinetissue5.7
Basal gangliatissue5.2
Gallbladdertissue4.8
Urinary bladdertissue4.6
Entorhinal cortextissue4.4
Olfactory bulbtissue4.2
Cerebral cortextissue4.0
Motor cortextissue4.0
Duodenumtissue4.0
Thymustissue4.0
Temporal cortextissue3.9
Prefrontal cortextissue3.8
Rectumtissue3.8
Insular cortextissue3.7
Retrosplenial cortextissue3.6
Colontissue3.2
Livertissue3.2
Smooth muscletissue3.1
Cingulate cortextissue3.1
Somatosensory cortextissue3.0
Occipital cortextissue2.9
Salivary glandtissue2.8
Breasttissue2.4
Cervixtissue2.0
Adrenal glandtissue1.9
Choroid plexustissue1.8
Prostatetissue1.8
Adipose tissuetissue1.7
Fallopian tubetissue1.6
Esophagustissue1.4
Endometrium 1tissue1.4
Bone marrowtissue1.3
Cerebellumtissue1.2
Skin 1tissue1.1
Heart muscletissue1.0
Seminal vesicletissue1.0
Kidneytissue1.0
Ovarytissue0.9
Epididymistissue0.9

Brain sub-regions (HPA Brain Atlas): detected in 183; highest nTPM — Dorsal spinal cord (13.4), Ventral spinal cord (12.4), White matter (11.0), Dorsal hippocampus (6.5), Subiculum (5.9).

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, CEBPB, CREB1, EGR1, FOS, GATA1, GATA3, HAND1, IRF1, JUN, KLF2, MYC, NFKB1, NR3C2, POU2F2, RELA, STAT1, STAT3, TRERF1, YY1

miRNA regulators (miRDB)

Targeting CCR5 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 65 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5193100.0067.261744
HSA-MIR-7110-3P100.0073.182486
HSA-MIR-6759-5P99.9966.54785
HSA-MIR-6793-5P99.9765.95758
HSA-MIR-1229-3P99.9766.49906
HSA-MIR-493-5P99.9672.472382
HSA-MIR-4778-3P99.9370.401818
HSA-MIR-335-3P99.9373.364958
HSA-MIR-345-3P99.8970.231421
HSA-MIR-629-3P99.8567.991875
HSA-MIR-63699.8069.581500
HSA-MIR-6817-3P99.7968.352126
HSA-MIR-4694-3P99.7969.532640
HSA-MIR-4713-5P99.7867.801794
HSA-MIR-498-5P99.7669.641807
HSA-MIR-431999.7669.832586
HSA-MIR-808499.7369.571760
HSA-MIR-4524A-3P99.7266.852406
HSA-MIR-670-5P99.6769.941565
HSA-MIR-317599.6566.302031
HSA-MIR-182-3P99.5767.57825
HSA-MIR-427699.5667.662514
HSA-MIR-1212399.5271.792990
HSA-MIR-5007-3P99.5168.141242
HSA-MIR-203A-3P99.4970.562806
HSA-MIR-125B-5P99.3670.361662
HSA-MIR-125A-5P99.3670.591640
HSA-MIR-431299.3467.30511
HSA-MIR-751599.3168.221795
HSA-MIR-6731-5P99.2867.422375

Functional genomics

gnomAD constraint: pLI 0.181, LOEUF 1.59, missense Z -0.388 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000292303 — one region, missense o/e 1.10.

Literature-anchored findings (GeneRIF, showing 40)

  • Biological characterization and chemokine receptor usage of HIV type 1 isolates prevalent in Brazil. (PMID:11559423)
  • differences in primary structural requirements for RANTES, MIP-1 alpha, and vMIP-II binding (PMID:11700073)
  • Association of CCR5 genotype with disease progression of HIV infection (PMID:11709782)
  • Effect of cocaine on chemokine and CCR-5 gene expression by mononuclear cells from normal donors and HIV-1 infected patients. (PMID:11727771)
  • Up-regulation on distinct subpopulations of antigen-activated CD4+ T lymphocytes (PMID:11751947)
  • genotypes and their relative contribution to human immunodeficiency virus type 1 (HIV-1) seroconversion, early HIV-1 RNA concentration in plasma, and later disease progression (PMID:11752157)
  • CC chemokine receptor 5 (CCR5) mRNA expression in pulmonary sarcoidosis (PMID:11803051)
  • results support the conclusion that the CCR5-Delta32/Delta32 genotype mediated resistance is incomplete and is associated with acquisition of exclusively-X4 variants of HIV-1 (PMID:11873082)
  • CXCR-4 was constitutively expressed by thymocytes and it mediated polarization, migration and intercellular CA2+ increase in response to SDF-1. (PMID:11876757)
  • the role of CD4, CXCR4, and CCR5 in HIV envelope-mediated apoptosis was examined in peripheral blood mononuclear cells (PMID:11878912)
  • cytokine regulation of CCR5 expression on monocytes, monocyte-derived macrophages (MDMs), and microglia was investigated (PMID:11920312)
  • Lipopolysaccharide,lipoarabinomannan and lipoteichoic acid down-regulated the expression of CXCR4 and CCR5 on monocytes (PMID:11920324)
  • Results identified specific regions in CCR5 that confer HIV-1 coreceptor function, structural rearrangements in the transmembrane region that may modulate this activity, and a role for the extracellular surface in folding and assembly. (PMID:11937056)
  • Graves’ disease is associated with an altered CCR5 expression in thyroid-derived compared to peripheral blood t lymphocytes (PMID:11966764)
  • Elevated expression of CCR5 by myeloid (CD11c+) blood dendritic cells in multiple sclerosis and acute optic neuritis (PMID:11966770)
  • High level expression of CCR5 is a characteristic and selective feature of circulating V delta 2 gamma delta T cells, which is in line with their suspected function as Th1 effector T cells. (PMID:11994442)
  • CCR5 and CXCR4 are present on the resident testicular macrophages in the interstitial space but not in the germ cell line (PMID:11994538)
  • Cholesterol is essential for macrophage inflammatory protein 1 beta binding and signaling and conformational integrity of CC chemokine receptor 5. (PMID:12036855)
  • Frequency of the HIV-protective CC chemokine receptor 5-Delta32/Delta32 genotype is increased in hepatitis C. (PMID:12055576)
  • decreased density of the CCR5 receptor on the surface of CD4+ lymphocytes and monocytes/macrophages is associated with the CCR5-59653T transition in the promoter region (PMID:12056598)
  • Most Natural killer t-cells express receptors for extralymphoid tissue or inflammation-related chemokines (CCR2, CCR5, and CXCR3), while few NKT cells express lymphoid tissue-homing chemokine receptors (CCR7 and CXCR5). (PMID:12070001)
  • chronic hepatitis C, but not hepatitis B, infection alters surface expression of CCR1 and CCR5 in T cells, resulting in lower CC chemokine responsiveness. (PMID:12085329)
  • Caco-2 and M cells do not express CCR5, but transfection of these cells with CCR5 cDNA restores transport of R5 virus, which demonstrates that HIV-1 transport across M cells is receptor-mediated. (PMID:12093918)
  • CCR5 mediates Fas- and caspase-8 dependent apoptosis of both uninfected and HIV infected primary human CD4 T cells (PMID:12131184)
  • Data show that two distinct forms of CCR5 protein, 62 and 42k Da, are present in lymphocytic cells. (PMID:12163044)
  • tyrosine sulfastion of n-terminal peptide follows a discrete pattern and temporal sequence (PMID:12169668)
  • expression detected in a stromal cell line, a myeloma cell line, and primary multiple myeloma cells and may be target for MIP1A and MIP1B. (PMID:12200385)
  • prevalence of CCR5-Delta32 allele frequency in a large Pakistani population sample representing 10 ethnic groups (PMID:12215252)
  • Binding chemokines modulate CXCL12 (SDF-1)-induced responses of progenitor B cells in human bone marrow through heterologous desensitization of the CXCR4 chemokine receptor (PMID:12239139)
  • P. falciparum antigens (PF-Ags) variably regulate the expression of HIV-1 coreceptors and modulate the infectability of CD4 cells by HIV-1 (PMID:12355376)
  • Significant increase in surface CCR5 in CD4+, CD8+, CD19+ and CD14+ cells as well as an increased percentage of CXCR3 and CXCR4 in CD14+ cells in MS patients. (PMID:12356205)
  • role of IL-12 and IFN-gamma on inducing inflammatory chemokine secretion and down-regulating CCR5 expression in human T cells (PMID:12377943)
  • influence of the major CCR5 promoter or coding region variants as haplotypes and genotypes in a cohort of 250 chronically infected HCV patients (PMID:12403355)
  • CCR5 is phosphorylated at specific sites by protein kinase C and GPCR kinase (PMID:12403770)
  • These results suggest that oligomerization of chemokine receptor CCR5 and opioid receptors mu, delta and kappa on the cell membrane of human or monkey lymphocytes may modulate receptor functions. (PMID:12413885)
  • chemokine receptor CCR5 deletion mutation is associated with multiple sclerosis in HLA-DR4-positive Russians (PMID:12451219)
  • META-ANALYSIS: Effect of CCR5-delta32 heterozygosity on the risk of perinatal HIV-1 infection (PMID:12514416)
  • An increase in the numbers of CCR5(+) cells in H. pylori-infected stomach mucosa suggests that this molecule may play an important role in gastric immune responses. (PMID:12522035)
  • physical association of CD4 and CCR5 results in receptor cross-talk with allosteric CD4-dependent regulation of the binding and signaling properties of CCR5 (PMID:12531905)
  • Limited protective effect of the CCR5Delta32/CCR5Delta32 genotype on human immunodeficiency virus infection incidence in a cohort of patients with hemophilia and selection for genotypic X4 virus (PMID:12552446)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_rerioccr11.1ENSDARG00000070755
danio_rerioccr2ENSDARG00000079829
danio_reriosi:ch211-207g17.3ENSDARG00000105363
mus_musculusCcr5ENSMUSG00000079227
rattus_norvegicusCcr5ENSRNOG00000049115

Paralogs (23): CCR6 (ENSG00000112486), CCRL2 (ENSG00000121797), CCR2 (ENSG00000121807), CXCR4 (ENSG00000121966), CCR7 (ENSG00000126353), ACKR4 (ENSG00000129048), ACKR3 (ENSG00000144476), ACKR2 (ENSG00000144648), RGR (ENSG00000148604), CXCR5 (ENSG00000160683), CXCR1 (ENSG00000163464), CCR1 (ENSG00000163823), CX3CR1 (ENSG00000168329), CXCR6 (ENSG00000172215), XCR1 (ENSG00000173578), CCR9 (ENSG00000173585), CCR8 (ENSG00000179934), CXCR2 (ENSG00000180871), GALR2 (ENSG00000182687), CCR3 (ENSG00000183625), CCR4 (ENSG00000183813), CCR10 (ENSG00000184451), CXCR3 (ENSG00000186810)

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:107182) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 50 distinct phenotype terms.

Mouse phenotype (MP)Records
impaired macrophage chemotaxis3
abnormal response to cardiac infarction1
decreased metastatic potential1
abnormal locomotor behavior1
abnormal spatial learning1
abnormal cardiovascular system physiology1
decreased inflammatory response1
increased susceptibility to bacterial infection1
abnormal CD4-positive, alpha beta T cell morphology1
abnormal leukocyte physiology1
abnormal conditioned taste aversion behavior1
abnormal cytokine secretion1
liver failure1
increased alcohol consumption1
abnormal leukocyte adhesion1
abnormal nervous system physiology1
abnormal glial cell physiology1
increased length of allograft survival1
abnormal CD8-positive, alpha beta T cell morphology1
decreased T cell proliferation1
decreased susceptibility to injury1
increased susceptibility to fungal infection1
abnormal heart size1
cornea vascularization1
increased susceptibility to type IV hypersensitivity reaction1

+25 more (showing top 25).

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Trachypithecus phayreiO97879100.0%Diamond
Pongo pygmaeusO97881100.0%Diamond
Pan troglodytesP56440100.0%Diamond
Pan paniscusP60574100.0%Diamond
Lophocebus aterrimusP61755100.0%Diamond
Pongo abeliiP61756100.0%Diamond
Semnopithecus entellusP61757100.0%Diamond
Macaca mulattaP61813100.0%Diamond
Macaca fascicularisP61814100.0%Diamond
Macaca nemestrinaP61815100.0%Diamond
Papio anubisP68269100.0%Diamond
Papio hamadryasP68270100.0%Diamond
Cercocebus atysO6274399.7%Diamond
Trachypithecus francoisiO9787899.7%Diamond
Rhinopithecus bietiO9788099.7%Diamond
Rhinopithecus avunculusO9796299.7%Diamond
Macaca arctoidesO9797599.7%Diamond
Meleagris gallopavoP3339699.7%Diamond
Gorilla gorilla gorillaP5643999.7%Diamond
Gallus gallusP7978599.7%Diamond
Hylobates molochQ95NC099.7%Diamond
Theropithecus geladaQ95NC199.7%Diamond
Symphalangus syndactylusQ95NC599.7%Diamond
Nasalis larvatusQ95NC799.7%Diamond
Colobus polykomosQ95NC899.7%Diamond
Cercocebus galeritusQ9TV4999.7%Diamond
Pygathrix nemaeusO9788299.4%Diamond
Nomascus leucogenysO9788399.4%Diamond
Chlorocebus aethiopsP5649399.4%Diamond
Trachypithecus johniiQ95NC699.4%Diamond
Mandrillus sphinxQ95ND199.4%Diamond
Mandrillus leucophaeusQ95ND299.4%Diamond
Chlorocebus tantalusQ95NE899.4%Diamond
Allochrocebus solatusQ9BGN699.4%Diamond
Chlorocebus pygerythrusQ9TV4299.4%Diamond
Allochrocebus lhoestiQ9XT7699.4%Diamond
Miopithecus talapoinQ95NC399.1%Diamond
Erythrocebus patasQ95ND099.1%Diamond
Chlorocebus sabaeusQ9TV4399.1%Diamond
Cercopithecus cephusQ9TV4799.1%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
CCR5ASncRNA102724297
CCR1protein-coding1230
CCR3protein-coding1232
CCR2protein-coding729230
LINC02009ncRNA105377068
CCRL2protein-coding9034
LTFprotein-coding4057
RTP3protein-coding83597

Protein

Protein identifiers

C-C chemokine receptor type 5 — P51681 (reviewed: P51681)

Alternative names: CHEMR13, HIV-1 fusion coreceptor

All UniProt accessions (2): P51681, Q38L21

UniProt curated annotations — full annotation on UniProt →

Function. Receptor for a number of inflammatory CC-chemokines including CCL3/MIP-1-alpha, CCL4/MIP-1-beta and RANTES and subsequently transduces a signal by increasing the intracellular calcium ion level. May play a role in the control of granulocytic lineage proliferation or differentiation. Participates in T-lymphocyte migration to the infection site by acting as a chemotactic receptor. (Microbial infection) Acts as a coreceptor (CD4 being the primary receptor) of human immunodeficiency virus-1/HIV-1.

Subunit / interactions. Interacts with PRAF2. Efficient ligand binding to CCL3/MIP-1alpha and CCL4/MIP-1beta requires sulfation, O-glycosylation and sialic acid modifications. Glycosylation on Ser-6 is required for efficient binding of CCL4. Interacts with GRK2. Interacts with ARRB1 and ARRB2. Interacts with CNIH4. Interacts with S100A4; this interaction stimulates T-lymphocyte chemotaxis. (Microbial infection) Interacts with HIV-1 surface protein gp120. (Microbial infection) May interact with human cytomegalovirus/HHV-5 protein UL78. (Microbial infection) Interacts with Kaposi virus protein vCCL2.

Subcellular location. Cell membrane.

Tissue specificity. Highly expressed in spleen, thymus, in the myeloid cell line THP-1, in the promyeloblastic cell line KG-1a and on CD4+ and CD8+ T-cells. Medium levels in peripheral blood leukocytes and in small intestine. Low levels in ovary and lung.

Post-translational modifications. Sulfated on at least 2 of the N-terminal tyrosines. Sulfation contributes to the efficiency of HIV-1 entry and is required for efficient binding of the chemokines, CCL3 and CCL4. O-glycosylated, but not N-glycosylated. Ser-6 appears to be the major site even if Ser-7 may be also O-glycosylated. Also sialylated glycans present which contribute to chemokine binding. Thr-16 and Ser-17 may also be glycosylated and, if so, with small moieties such as a T-antigen. Palmitoylation in the C-terminal is important for cell surface expression, and to a lesser extent, for HIV entry. Phosphorylation on serine residues in the C-terminal is stimulated by binding CC chemokines especially by APO-RANTES.

Disease relevance. Type 1 diabetes mellitus 22 (T1D22) [MIM:612522] A multifactorial disorder of glucose homeostasis that is characterized by susceptibility to ketoacidosis in the absence of insulin therapy. Clinical features are polydipsia, polyphagia and polyuria which result from hyperglycemia-induced osmotic diuresis and secondary thirst. These derangements result in long-term complications that affect the eyes, kidneys, nerves, and blood vessels. Disease susceptibility is associated with variants affecting the gene represented in this entry.

Induction. (Microbial infection) May be down-regulated by human cytomegalovirus/HHV-5 protein UL78.

Polymorphism. Variations in CCR5 are associated with resistance or susceptibility to immunodeficiency virus type 1 (resistance or susceptibility to HIV-1) [MIM:609423]. Variations in CCR5 gene also influence the rate of progression to AIDS after infection. Variations in CCR5 are associated with susceptibility to West Nile virus (WNV) infection [MIM:610379].

Similarity. Belongs to the G protein-coupled receptor 1 family.

RefSeq proteins (3): NP_000570, NP_001093638, NP_001381712* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR000355Chemokine_rcptFamily
IPR002240Chemokine_CCR5Family
IPR017452GPCR_Rhodpsn_7TMDomain
IPR050119CCR1-9-likeFamily

Pfam: PF00001

UniProt features (113 total): sequence variant 38, mutagenesis site 22, helix 16, topological domain 8, modified residue 8, transmembrane region 7, strand 3, turn 3, lipid moiety-binding region 3, glycosylation site 2, disulfide bond 2, chain 1

Structure

Experimental structures (PDB)

26 structures by resolution:

PDBTitleMethodResolution (Å)
5YD3Crystal structure of the scFv antibody 4B08 with epitope peptideX-RAY DIFFRACTION1.35
5YD4Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation T6A)X-RAY DIFFRACTION1.35
5YY4Crystal structure of the scFv antibody 4B08 with sulfated epitope peptideX-RAY DIFFRACTION1.59
9J8AStructure of antibody BA8 in complex with sulfated peptide from CCR5X-RAY DIFFRACTION1.75
5YD5Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation N3A)X-RAY DIFFRACTION1.96
5UIWCrystal Structure of CC Chemokine Receptor 5 (CCR5) in complex with high potency HIV …X-RAY DIFFRACTION2.2
7F1TCrystal structure of the human chemokine receptor CCR5 in complex with MIP-1aX-RAY DIFFRACTION2.6
4MBSCrystal Structure of the CCR5 Chemokine ReceptorX-RAY DIFFRACTION2.71
6AKXThe Crystal structure of Human Chemokine Receptor CCR5 in complex with compound 21X-RAY DIFFRACTION2.8
6AKYThe Crystal structure of Human Chemokine Receptor CCR5 in complex with compound 34X-RAY DIFFRACTION2.8
7F1SCryo-EM structure of the apo chemokine receptor CCR5 in complex with GiELECTRON MICROSCOPY2.8
7F1QCryo-EM structure of the chemokine receptor CCR5 in complex with MIP-1a and GiELECTRON MICROSCOPY2.9
7F1RCryo-EM structure of the chemokine receptor CCR5 in complex with RANTES and GiELECTRON MICROSCOPY3
7O7FStructural basis of the activation of the CC chemokine receptor 5 by a chemokine agonistELECTRON MICROSCOPY3.15
7NJZX-ray crystallography study of RoAb13 which binds to PIYDIN, a part of the CCR5 N …X-RAY DIFFRACTION3.2
8AS2Structure of arrestin2 in complex with 4P CCR5 phosphopeptide and Fab30X-RAY DIFFRACTION3.2
9WP1Structural insights into tyrosine sulfation of CCR5 by human tyrosylprotein …X-RAY DIFFRACTION3.2
7NW3X-ray crystallographic study of PIYDIN, which contains the truncation determinants of …X-RAY DIFFRACTION3.2
8AS3Structure of arrestin2 in complex with 6P CCR5 phosphopeptide and Fab30X-RAY DIFFRACTION3.5
6MEOStructural basis of coreceptor recognition by HIV-1 envelope spikeELECTRON MICROSCOPY3.9
6METStructural basis of coreceptor recognition by HIV-1 envelope spikeELECTRON MICROSCOPY4.5
2L87The 27-residue N-terminus CCR5-peptide in a ternary complex with HIV-1 gp120 and a …SOLUTION NMR
2MZXCCR5-ECL2 helical structure, residues Q186-T195SOLUTION NMR
2RLLCCR5 Nt(7-15)SOLUTION NMR
2RRSNMR Structure of LC4 transmembrane segment of CCR5SOLUTION NMR
6FGPNMR solution structure of monomeric CCL5 in complex with a doubly-sulfated N-terminal …SOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P51681-F185.410.66

Antibody-complex structures (SAbDab)

10 antibodies co-crystallized with this protein: 5YD3, 5YD4, 5YD5, 5YY4, 7NJZ, 7NW3, 7O7F, 8AS2, 8AS3, 9J8A

Human Protein Atlas

Protein class: CD markers, G-protein coupled receptors, GPCRs excl olfactory receptors, Chemokines and chemotactic factors receptors, Predicted membrane proteins, GPCRHMM predicted membrane proteins, Disease related genes, FDA approved drug targets, Small molecule drugs, Human disease related genes, Diabetes

Protein evidence: Evidence at protein level

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (11)

TypePositions
Sulfotyrosine3, 10, 14, 15
Phosphoserine336, 337, 342, 349
S-palmitoyl cysteine321, 323, 324

Disulfide bonds (2)

TypePositions
Disulfide bond20–269, 101–178

Glycosylation sites (2)

TypePositions
O-linked (galnac…) serine6, 7

Mutagenesis-validated functional residues (22)

PositionPhenotype
3no sulfation and strongly decreases binding with ccl4 and ccl5; when associated with d-10; d-14 and d-15. restores most ccl4 binding; when …
3no sulfation and strongly decreases binding with ccl4 and ccl5; when associated with f-10; f-14 and f-15.
6–7loss of molecular mass of 2 kda compared to wild type when treated with o-glycosidase. dramatically reduces binding with ccl4. loss of …
6strongly decreases ccl4 binding. no change in glycosylation status.
7no change in glycosylation status and binds ccl4 as efficiently as wild type.
10no sulfation and greatly decreases binding of ccl4 and ccl5; when associated with f-3; f-14 and f-15. small loss of sulfation; when …
14no sulfation and greatly decreased binding of ccl4 and ccl5; when associated with d-3; d-10 and d-14. no restoration of ccl4 binding; when …
14no sulfation and greatly decreases binding of ccl4 and ccl5; when associated with f-3; f-10; and f-15. small loss of sulfation; when …
15no sulfation and greatly decreased binding of ccl4 and ccl5; when associated with d-3; d-10 and d-14. restored most ccl4 binding; when …
15no sulfation and greatly decreases binding of ccl4 and ccl5; when associated with f-3; f-10 and f-14. small loss of sulfation; when …
16–17similar decrease in molecular mass when treated with o-glycosidase as for wild type. loss of molecular mass of about 2 kda as compared to …
20decreases to 40% surface expression. no effect on conformational integrity. disrupts binding of ccl4. decreases cell hiv infection.
101decreases to 40% surface expression. disrupts conformational integrity. disrupts binding of ccl4. decreases hiv cell infection.
178decreases to 40% surface expression. disrupts conformational integrity. disrupts binding of ccl4. decreases hiv cell infection.
269decreases to 40% surface expression. no effect on conformational integrity. disrupts binding of ccl4. decreases cell hiv infection.
321small reduction in palmitoylation. cell surface expression reduced by 50%. greatly reduced palmitoylation. cell surface expression greatly …
323small reduction in palmitoylation. cell surface expression reduced by 50%. greatly reduced palmitoylation. cell surface expression greatly …
324small reduction in palmitoylation. cell surface expression reduced by 50%. greatly reduced palmitoylation. cell surface expression greatly …
336apo-rantes-stimulated phosphorylation reduced by 15%; apo-rantes-stimulated phosphorylation reduced by 30-50%; when associated with a-337 …
337apo-rantes-stimulated phosphorylation reduced by 18%; apo-rantes-stimulated phosphorylation reduced by 30-50% on apo-rantes stimulation …
342apo-rantes-stimulated phosphorylation reduced by 42%. phosphorylation reduced by 50% on apo-rantes stimulation; when associated with a-336 …
349apo-rantes-stimulated phosphorylation reduced by 43%; apo-rantes-stimulated phosphorylation reduced by 30-50%; when associated with a-336 …

Function

Pathways and Gene Ontology

Reactome pathways

5 curated (TAS) of 20; 7 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

20 pathways:

IDPathwayEvidence
R-HSA-173107Binding and entry of HIV virion ⚕curated
R-HSA-380108Chemokine receptors bind chemokinescurated
R-HSA-9968734Differentiation of Circulating Monocytescurated
R-HSA-418594G alpha (i) signalling eventscurated
R-HSA-6783783Interleukin-10 signalingcurated
R-HSA-1643685Disease ⚕—
R-HSA-162594Early Phase of HIV Life Cycle ⚕—
R-HSA-162906HIV Infection ⚕—
R-HSA-162587HIV Life Cycle ⚕—
R-HSA-5663205Infectious disease ⚕—
R-HSA-9824446Viral Infection Pathways ⚕—
R-HSA-373076Class A/1 (Rhodopsin-like receptors)—
R-HSA-1280215Cytokine Signaling in Immune system—
R-HSA-388396GPCR downstream signalling—
R-HSA-500792GPCR ligand binding—
R-HSA-168256Immune System—
R-HSA-375276Peptide ligand-binding receptors—
R-HSA-162582Signal Transduction—
R-HSA-372790Signaling by GPCR—
R-HSA-449147Signaling by Interleukins—

MSigDB gene sets: 383 (showing top): MODULE_92, LIANG_HEMATOPOIESIS_STEM_CELL_NUMBER_SMALL_VS_HUGE_UP, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_DENDRITIC_CELL_MIGRATION, GOBP_CELL_CHEMOTAXIS, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, GOBP_REGULATION_OF_LEUKOCYTE_APOPTOTIC_PROCESS, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS, MODULE_64, KENNY_CTNNB1_TARGETS_UP, GOCC_CELL_SURFACE, MODULE_128

GO Biological Process (22): MAPK cascade (GO:0000165), dendritic cell chemotaxis (GO:0002407), calcium ion transport (GO:0006816), chemotaxis (GO:0006935), inflammatory response (GO:0006954), immune response (GO:0006955), cellular defense response (GO:0006968), cell surface receptor signaling pathway (GO:0007166), G protein-coupled receptor signaling pathway (GO:0007186), positive regulation of cytosolic calcium ion concentration (GO:0007204), cell-cell signaling (GO:0007267), release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (GO:0014808), calcium-mediated signaling (GO:0019722), signaling (GO:0023052), cell chemotaxis (GO:0060326), response to cholesterol (GO:0070723), cellular response to lipopolysaccharide (GO:0071222), negative regulation of macrophage apoptotic process (GO:2000110), signal transduction (GO:0007165), symbiont entry into host cell (GO:0046718), chemokine-mediated signaling pathway (GO:0070098), cellular response to cytokine stimulus (GO:0071345)

GO Molecular Function (11): virus receptor activity (GO:0001618), actin binding (GO:0003779), phosphatidylinositol-4,5-bisphosphate phospholipase C activity (GO:0004435), chemokine receptor activity (GO:0004950), coreceptor activity (GO:0015026), C-C chemokine receptor activity (GO:0016493), C-C chemokine binding (GO:0019957), identical protein binding (GO:0042802), chemokine (C-C motif) ligand 5 binding (GO:0071791), G protein-coupled receptor activity (GO:0004930), protein binding (GO:0005515)

GO Cellular Component (6): cytoplasm (GO:0005737), endosome (GO:0005768), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), membrane (GO:0016020)

Reactome top-level categories

16 top-level categories:

CategoryPathways
Signaling by GPCR2
Early Phase of HIV Life Cycle1
Peptide ligand-binding receptors1
GPCR downstream signalling1
Signaling by Interleukins1
Developmental Cell Lineages1
Immune System1
HIV Infection1
HIV Life Cycle1
Viral Infection Pathways1
Signal Transduction1
GPCR ligand binding1
Class A/1 (Rhodopsin-like receptors)1
Cytokine Signaling in Immune system1
Disease1
Infectious disease1

GO top-level categories

59 GO namespaces:

CategoryTerms
cellular anatomical structure3
intracellular signaling cassette2
defense response2
signal transduction2
cell communication2
signaling2
chemokine binding2
C-C chemokine binding2
leukocyte chemotaxis1
dendritic cell migration1
metal ion transport1
response to chemical1
taxis1
immune system process1
response to stimulus1
G protein-coupled receptor activity1
regulation of biological quality1
sarcoplasmic reticulum calcium ion transport1
release of sequestered calcium ion into cytosol by endoplasmic reticulum1
regulation of biological process1
chemotaxis1
cell migration1
cellular response to chemical stimulus1
response to sterol1
response to alcohol1
response to lipopolysaccharide1
cellular response to molecule of bacterial origin1
cellular response to lipid1
cellular response to oxygen-containing compound1
negative regulation of myeloid cell apoptotic process1
macrophage apoptotic process1
negative regulation of leukocyte apoptotic process1
regulation of macrophage apoptotic process1
cellular process1
regulation of cellular process1
cellular response to stimulus1
viral life cycle1
symbiont entry into host1
symbiont entry into host cell1
exogenous protein binding1
cytoskeletal protein binding1
C-type glycerophospholipase activity1
G protein-coupled chemoattractant receptor activity1
cytokine receptor activity1
chemokine-mediated signaling pathway1
signaling receptor activity1
chemokine receptor activity1
protein binding1
transmembrane signaling receptor activity1
G protein-coupled receptor signaling pathway1
binding1
intracellular anatomical structure1
endomembrane system1
cytoplasmic vesicle1
membrane1
cell periphery1
plasma membrane1
cell surface1
side of membrane1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 17 of 39 annotations. The rest are phylogenetic / computational / electronic (IEA).

17 experimentally-supported GO terms:

GO termNSEvidence
G protein-coupled receptor signaling pathwayBPmutant phenotype
MAPK cascadeBPexpression pattern
calcium ion transportBPdirect assay
calcium-mediated signalingBPdirect assay
cell-cell signalingBPdirect assay
cellular response to lipopolysaccharideBPexpression pattern
release of sequestered calcium ion into cytosol by sarcoplasmic reticulumBPdirect assay
response to cholesterolBPmutant phenotype
signalingBPexpression pattern
cell surfaceCCdirect assay
endosomeCCdirect assay
external side of plasma membraneCCdirect assay
C-C chemokine bindingMFphysical interaction
C-C chemokine receptor activityMFdirect assay
actin bindingMFdirect assay
chemokine (C-C motif) ligand 5 bindingMFphysical interaction
identical protein bindingMFphysical interaction

Protein interactions and networks

STRING

showing 15 of 3,150 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
CCR5CCL5P13501958
CCR5CD4P01730946
CCR5CCL3P10147941
CCR5ITIH4Q14624938
CCR5CCL4P13236929
CCR5CCL2P13500896
CCR5CD8AP01732890
CCR5IL6P05231856
CCR5IFNGP01579854
CCR5CXCL12P48061830
CCR5CCL3L1P16619823
CCR5CX3CL1P78423816
CCR5TNFP01375809
CCR5IL10P22301809
CCR5ERVW-1Q9UQF0792

IntAct

Human interaction partners of CCR5 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

20 partners by confidence:

PartnerInteraction typeMIscoreRecords
CD4physical association0.6703
CXCR4physical association0.6703
CCL5physical association0.6605
EMP1physical association0.5603
PRAF2physical association0.5203
CCL17physical association0.5002
ACKR1physical association0.4703
CCL4physical association0.4002
ARL6IP5physical association0.4001
MYH9physical association0.4001
RAMP1physical association0.4001
RAMP2physical association0.4001
RAMP3physical association0.4001
Cphysical association0.3701
CREB3physical association0.3701
CST9Lphysical association0.3701
CTBP2physical association0.3701
ETV5physical association0.3701
IL24physical association0.3701
SLC20A2physical association0.3701

BioGRID (25 interactions; top human partners by supporting records): CCL5 (Affinity Capture-Western; 3 records), CCL3L1 (Reconstituted Complex; 2 records), PSMA5 (Two-hybrid; 2 records), AFP (Affinity Capture-Western), ARRB1 (Reconstituted Complex), CCL3 (Reconstituted Complex), CD4 (Affinity Capture-Western), CST9L (Two-hybrid), CTBP2 (Two-hybrid), CXCR4 (Reconstituted Complex), EMP1 (Two-hybrid), ETV5 (Two-hybrid), IL24 (Two-hybrid), JAK2 (Affinity Capture-Western), PIK3R2 (Affinity Capture-Western)

SIGNOR signaling

showing 12 of 16 signaling interactions:

AEffectBMechanism
maravirocdown-regulatesCCR5“chemical inhibition”
“Vicriviroc Malate”down-regulatesCCR5“chemical inhibition”
CCL5“up-regulates activity”CCR5binding
CCR5“up-regulates activity”GNAI1binding
CCR5“up-regulates activity”GNAI2binding
CCR5“up-regulates activity”GNAZbinding
CCR5“up-regulates activity”GNAO1binding
CCR5“up-regulates activity”GNA15binding
CCL3“up-regulates activity”CCR5binding
CCL4“up-regulates activity”CCR5binding
CCR5“up-regulates activity”ERK1/2phosphorylation
GRK3“down-regulates activity”CCR5phosphorylation

Protein complexes (CORUM) (10)

Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).

10 complexes by size:

ComplexSubunitsMembers
★ CCR5-CD4-CXCR4 complex3CCR5, CD4, CXCR4
★ CCR5-CNIH4 complex2CCR5, CNIH4
★ C5AR1-CCR5 complex2C5AR1, CCR5
★ CCR5-CXCR4 complex2CCR5, CXCR4
★ CCR2-CCR5 complex2CCR2, CCR5
★ CCR5-OPRM1 complex2CCR5, OPRM1
★ CCR5-OPRD1 complex2CCR5, OPRD1
★ CCR5-OPRK1 complex2CCR5, OPRK1
★ CCR5-CD4 complex2CCR5, CD4
★ C-C chemokine receptor type 51CCR5

Ligand–receptor pairs (CellPhoneDB) (5)

Curated ligand–receptor partners (cell-cell communication), distinct from the protein–protein interactions above.

5 ligand–receptor pairs:

PartnerThis gene’s roleSignaling class
CCL7receptorSignaling by Chemokines
CCL5receptorSignaling by Chemokines
CCL3receptorSignaling by Chemokines
CCL8receptorSignaling by Chemokines
CCL4receptorSignaling by Chemokines

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 20 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

GO biological processes:

GO termPartnersFoldFDR
protein transport613.9×3e-04
immune response512.4×7e-04
inflammatory response59.9×2e-03
G protein-coupled receptor signaling pathway59.5×2e-03

Disease & clinical

Genetic variants

Variant evidence for CCR5: 46 ClinVar records (0 pathogenic / likely pathogenic); 9 GWAS associations.

ClinVar

46 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance29
Likely benign4
Benign5

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 17 predictions of 23):

Position(s)EffectΔscoreSites
3:46370989–46370990donor_loss0.99003
3:46370989donor_loss0.9800
3:46372890–46372891acceptor_loss0.98003
3:46370990donor_loss0.9700
3:46372889–46372891acceptor_loss0.97004
3:46372885acceptor_gain0.9200
3:46372885acceptor_gain0.8100
3:46373040acceptor_gain0.7500
3:46372881acceptor_loss0.7400
3:46373645acceptor_gain0.5400

AlphaMissense

682 missense substitutions predicted likely pathogenic (of 2,321 scored), across 197 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
D7680.9460.980
N4880.9360.980
D12580.9360.974
F30480.8920.987
D6680.8530.906
H28980.8260.951
F11880.8200.923
D27680.7090.811
C17870.9710.986
C10170.9670.986
W9470.9520.993
C2070.9430.969
C26970.9300.957
F16670.9190.967
W24870.8970.975
W15370.8950.994
R12670.8910.961
N29370.8890.978
F18270.8510.946
F11370.8060.943

HPA cancer prognostics

RNA cancer specificity: Low cancer specificity

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

1 prognostic cancer types:

CancerPrognosticp-value
Head and Neck Squamous Cell Carcinoma (TCGA)favorable0.000332

Disease associations

OMIM: gene MIM:601373 | disease phenotypes:

GWAS associations

9 associations:

StudyTraitp-value
GCST009731_29Blood protein levels in cardiovascular risk8e-83
GCST000612_32Celiac disease3e-17
GCST002665_3Cerebrospinal fluid levels of Alzheimer’s disease-related proteins2e-13
GCST003045_6Ulcerative colitis9e-10
GCST004608_74Granulocyte percentage of myeloid white cells1e-9
GCST003045_39Ulcerative colitis1e-8
GCST003043_190Inflammatory bowel disease4e-8
GCST005536_41Type 1 diabetes5e-8
GCST004133_14Ulcerative colitis2e-6

EFO canonical traits (from GWAS)

2 canonical traits:

EFO IDTrait name
EFO:0006514Alzheimer’s disease biomarker measurement
EFO:0007997granulocyte percentage of myeloid white cells

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL274 (SINGLE PROTEIN), CHEMBL3301384 (PROTEIN COMPLEX)

Drugs by curated mechanism of action (ChEMBL)

Drugs whose curated ChEMBL mechanism of action targets the CCR5 protein itself — single-protein targets only (drugs acting on a protein family or complex that merely includes it are excluded). Includes antibodies and oligonucleotides that bioactivity screening does not capture.

12 curated-mechanism drugs:

DrugModalityMax phase
MARAVIROCSmall molecule4
APLAVIROC HYDROCHLORIDESmall molecule3
CENICRIVIROCSmall molecule3
LERONLIMABAntibody3
VICRIVIROC MALEATESmall molecule3
AZD5672Small molecule2
BMS-813160Small molecule2
INCB-9471Small molecule2
PF-04634817Small molecule2
PF-232798Small molecule2
CCR5MAB004Unknown1
HGS-1025Unknown1

Molecules with ChEMBL bioactivity

Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 78,757 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

15 molecules by phase:

MoleculeNamePhasePatents
CHEMBL256907MARAVIROC46
CHEMBL2205807ABAMETAPIR4761
CHEMBL964DISULFIRAM439,061
CHEMBL17157TERFENADINE425,528
CHEMBL1255794APLAVIROC3957
CHEMBL1668019APLAVIROC HYDROCHLORIDE341
CHEMBL2110727CENICRIVIROC32,245
CHEMBL82301VICRIVIROC38,805
CHEMBL1951914AZD56722226
CHEMBL4594419BMS-813160260
CHEMBL1688243INCB-94712152
CHEMBL78535ANCRIVIROC2790
CHEMBL4457723BMS-74167222
CHEMBL397647JNJ-17166864 CATION236
CHEMBL2105686CENICRIVIROC MESYLATE187

PharmGKB: 1 entry (CPIC guideline: no)

PharmGKB variant annotations

Per-publication pharmacogenomic findings for this gene (significant associations).

1 published findings:

VariantDrug(s)CategoryFindingPMID
rs333glatiramer acetateEfficacyAllele del is associated with decreased response to glatiramer acetate in people with Multiple Sclerosis as compared to allele GTCAGTATCAATTCTGGAAGAATTTCCAGACA.PMID:22111603

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — Chemokine receptors

Most potent curated ligand interactions (31 total), top 25:

LigandActionAffinityParameter
CCL5Full agonist9.7pKi
CCL4Full agonist9.6pKi
[125I]CCL4 (human)Full agonist9.6pKd
AZD5672Antagonist9.59pIC50
CCL8Full agonist9.3pKi
vicrivirocAntagonist9.1pKi
CCL13Full agonist9.1pKi
[3H]maravirocAntagonist9.1pKd
CCL3Full agonist8.9pKi
[3H]ancrivirocAntagonist8.9pKd
E913Antagonist8.7pIC50
ancrivirocAntagonist8.7pKi
BMS-681Antagonist8.62pIC50
cenicrivirocAntagonist8.6pIC50
CCR5 antagonist 34Antagonist8.52pIC50
TAK-220Antagonist8.5pIC50
aplavirocAntagonist8.5pKi
vMIP-IIAntagonist8.3pIC50
maravirocAntagonist8.1pIC50
BP-CCL3Full agonist7.7pKi
CCL11Full agonist7.7pIC50
Flu-CCL3Full agonist7.6pKi
CCL7Antagonist7.5pKi
CCL2Full agonist7.5pKi
TAK-779Antagonist7.5pKi

Binding affinities (BindingDB)

2226 measured of 2381 human assays (2381 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
N-((1S)-3-(4-(3-(3,4-dichlorobenzyl)-1-ethylureido)piperidin-1-yl)-1-phenylbutyl)cyclobutanecarboxamideIC500.003 nM
(4,6-Dimethyl-pyrimidin-5-yl)-(4-methyl-4-{(S)-3-methyl-4-[(S)-1-(4-trifluoromethyl-phenyl)-ethyl]-piperazin-1-yl}-piperidin-1-yl)-methanoneIC500.01 nM
N-((1S)-3-(4-(2-(3,4-dichlorophenyl)-N-ethylacetamido)piperidin-1-yl)-1-phenylbutyl)cyclobutanecarboxamideIC500.05 nM
3-(R)-Cyclopropyl-2-[(S)-3-{4-[3,3-difluoro-3-(4-fluoro-phenyl)-propyl]-piperidin-1-ylmethyl}-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-propionic acidIC500.06 nM
CHEMBL181276IC500.06 nM
N-((1S)-3-(4-(N-ethyl-2-(4-(methylsulfonyl)phenyl)acetamido)piperidin-1-yl)-1-phenylbutyl)cyclobutanecarboxamideIC500.07 nM
CHEMBL2164207IC500.08 nM
CHEMBL1926899IC500.09 nM
Allyl-{1-[(S)-4-(benzenesulfonyl-methyl-amino)-3-methyl-3-phenyl-butyl]-piperidin-4-yl}-carbamic acid 4-nitro-benzyl esterIC500.1 nM
Allyl-[1-((3S,4S)-1-benzyl-4-phenyl-pyrrolidin-3-ylmethyl)-piperidin-4-yl]-carbamic acid 4-nitro-benzyl esterIC500.1 nM
Cyclohexyl-{3-phenyl-4-[4-(3-phenyl-propyl)-piperidin-1-ylmethyl]-pyrrolidin-1-yl}-acetic acidIC500.1 nM
(R)-3-Cyclobutyl-2-{(S)-3-phenyl-4-[4-(3-phenyl-propyl)-piperidin-1-ylmethyl]-pyrrolidin-1-yl}-propionic acidIC500.1 nM
(R)-3-cyclopropyl-2-((3S,4S)-3-phenyl-4-((4-(3-phenylpropyl)piperidin-1-yl)methyl)pyrrolidin-1-yl)propanoic acidIC500.1 nM
2-cyclobutyl-2-{3-phenyl-4-[4-(3-phenylpropyl)hexahydro-1-pyridinylmethyl]tetrahydro-1H-1-pyrrolyl}acetic acidIC500.1 nM
(R)-3-cyclobutyl-2-((3S,4S)-3-(3-fluorophenyl)-4-((4-(2-(4-fluorophenylthio)ethyl)piperidin-1-yl)methyl)pyrrolidin-1-yl)propanoic acidIC500.1 nM
(4-{(4-Bromo-phenyl)-[(E)-ethoxyimino]-methyl}-4’-methyl-[1,4’]bipiperidinyl-1’-yl)-(2,6-dimethyl-4-pyridin-4-yl-phenyl)-methanoneKI0.1 nM
endo-methyl 3-(8-((S)-3-acetamido-3-(3-fluorophenyl)propyl)-8-azabicyclo[3.2.1]octan-3-yl)-2-methyl-6,7-dihydro-3H-imidazo[4,5-c]pyridine-5(4H)-carboxylateIC500.1 nM
CHEMBL2164210IC500.1 nM
CHEMBL2164202IC500.1 nM
CHEMBL2164217IC500.11 nM
4N-allyl-4N-[4-nitrobenzyloxycarboyl]-1-[4’-phenyl-(3a’S,4’S,5’S)-spiro[cyclohexane-1,2’-perhydropyrrolo[1,2-b]isoxazole]-5-ylmethyl]hexahydro-4-pyridinamineIC500.13 nM
(+/-)-N-((1S)-3-(4-(3-isopropyl-5-methyl-4H-1,2,4-triazol-4-yl)piperidin-1-yl)-1-phenylbutyl)cyclopentanecarboxamideIC500.137 nM
N-((1S)-3-(4-(3-benzyl-1-ethylureido)piperidin-1-yl)-1-phenylbutyl)cyclobutanecarboxamideIC500.16 nM
CHEMBL2178577IC500.17 nM
Compound T140EC500.18 nM
(S)-(-)-8-{4-[2-(butoxy)ethoxy]phenyl}-1-isobutyl-N-(4-{[(4-propyl-4H-1,2,4-triazol-3-yl)methyl]sulfinyl}phenyl)-1,2,3,4-tetrahydro-1-benzazocine-5-carboxamideIC500.19 nM
Allyl-[1-((3S,4S)-1-benzoyl-4-phenyl-pyrrolidin-3-ylmethyl)-piperidin-4-yl]-carbamic acid 4-nitro-benzyl esterIC500.2 nM
Allyl-[1-((3S,4S)-1-cyclopentanecarbonyl-4-phenyl-pyrrolidin-3-ylmethyl)-piperidin-4-yl]-carbamic acid 4-nitro-benzyl esterIC500.2 nM
1-(1-Cyclohexylmethyl-4-phenyl-pyrrolidin-3-ylmethyl)-4-{3-[4-(1-methyl-1H-tetrazol-5-yl)-phenyl]-propyl}-piperidin-4-olIC500.2 nM
1-(1-Cyclohexylmethyl-4-phenyl-pyrrolidin-3-ylmethyl)-4-{3-[4-(1H-tetrazol-5-yl)-phenyl]-propyl}-piperidin-4-olIC500.2 nM
2-cyclopentyl-2-{3-phenyl-4-[4-(3-phenylpropyl)hexahydro-1-pyridinylmethyl]tetrahydro-1H-1-pyrrolyl}acetic acidIC500.2 nM
(R)-3-Cyclobutyl-2-((S)-3-(3-fluoro-phenyl)-4-{4-[3-(4-trifluoromethyl-phenyl)-propyl]-piperidin-1-ylmethyl}-pyrrolidin-1-yl)-propionic acidIC500.2 nM
3-(R)-Cyclobutyl-2-((S)-3-{4-[3,3-difluoro-3-(4-fluoro-phenyl)-propyl]-piperidin-1-ylmethyl}-4-phenyl-pyrrolidin-1-yl)-propionic acidIC500.2 nM
(R)-2-[(2S,3S)-3-[4-(2-Ethyl-5-naphthalen-2-ylmethyl-2H-pyrazol-3-yl)-piperidin-1-ylmethyl]-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-3,3-dimethyl-butyric acidIC500.2 nM
(2R,4R)-2-[(2S,3S)-3-[4-(2-Ethyl-5-naphthalen-2-ylmethyl-2H-pyrazol-3-yl)-piperidin-1-ylmethyl]-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-3-methyl-pentanoic acidIC500.2 nM
(2R,4R)-2-[(2S,3S)-3-[4-(2-Ethyl-5-naphthalen-1-ylmethyl-2H-pyrazol-3-yl)-piperidin-1-ylmethyl]-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-3-methyl-pentanoic acidIC500.2 nM
(R)-2-[(2S,3S)-3-[4-(2-Ethyl-5-naphthalen-1-ylmethyl-2H-pyrazol-3-yl)-piperidin-1-ylmethyl]-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-3,3-dimethyl-butyric acidIC500.2 nM
(R)-Cyclohexyl-[(2S,3S)-3-{4-[5-(4-cyclopropoxy-benzyl)-2-ethyl-2H-pyrazol-3-yl]-piperidin-1-ylmethyl}-4-(3-fluoro-phenyl)-pyrrolidin-1-yl]-acetic acidIC500.2 nM
endo-methyl(S)-3-(3-(5-acetyl-2-methyl-4,5,6,7-tetrahydro-3H-imidazo[4,5-c]pyridin-3-yl)-8-azabicyclo[3.2.1]octan-8-yl)-1-(3-fluorophenyl)propylcarbamateIC500.2 nM
endo-methyl 3-(8-((S)-3-(3-fluorophenyl)-3-(methoxycarbonylamino)propyl)-8-azabicyclo[3.2.1]octan-3-yl)-2-methyl-6,7-dihydro-3H-imidazo[4,5-c]pyridine-5(4H)-carboxylateIC500.2 nM
CHEMBL1926893IC500.2 nM
(S)-(-)-8-{4-[2-(butoxy)ethoxy]phenyl}-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-N-(4-{[(1-propyl-1H-imidazol-5-yl)methyl]-sulfinyl}phenyl)-1,2,3,4-tetrahydro-1-benzazocine-5-carboxamideIC500.21 nM
(R)-N-ethyl-N-(1-(3-(3-fluorophenyl)-3-(4-(methylsulfonyl)phenyl)propyl)piperidin-4-yl)-2-(4-(methylsulfonyl)phenyl)acetamideIC500.22 nM
2-{(S)-3-[4-(2-Benzyl-thiazol-5-yl)-piperidin-1-ylmethyl]-4-phenyl-pyrrolidin-1-yl}-3-cyclobutyl-propionic acidIC500.23 nM
2-{(S)-3-[4-(2-Benzyl-thiazol-5-yl)-piperidin-1-ylmethyl]-4-phenyl-pyrrolidin-1-yl}-3-cyclopropyl-propionic acidIC500.23 nM
(R)-2-((3S,4S)-3-((4-(2-benzylthiazol-5-yl)piperidin-1-yl)methyl)-4-phenylpyrrolidin-1-yl)-3-cyclobutylpropanoic acidIC500.23 nM
(R)-2-((3S,4S)-3-((4-(2-benzylthiazol-5-yl)piperidin-1-yl)methyl)-4-phenylpyrrolidin-1-yl)-3-cyclopropylpropanoic acidIC500.23 nM
CHEMBL3577945IC500.24 nM
(S)-(-)-8-{4-[2-(butoxy)ethoxy]phenyl}-1-propyl-N-(4-{[(1-propyl-1H-imidazol-5-yl)methyl]sulfinyl}phenyl)-1,2,3,4-tetrahydro-1-benzazocine-5-carboxamideIC500.24 nM
CHEMBL1951914IC500.26 nM

ChEMBL bioactivities

3034 potent at pChembl≥5 of 3211 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
11.00IC500.01nMCHEMBL311795
10.30IC500.05nMCHEMBL460845
10.22IC500.06nMCHEMBL21106
10.22IC500.06nMCHEMBL181276
10.22IC500.05998nMCHEMBL21106
10.15IC500.07nMCHEMBL457043
10.10IC500.08nMCHEMBL2164207
10.05IC500.09nMCHEMBL1926899
10.00IC500.1nMCHEMBL20345
10.00IC500.1nMCHEMBL20896
10.00IC500.1nMCHEMBL2164210
10.00IC500.1nMCHEMBL2164202
10.00IC500.1nMCENICRIVIROC MESYLATE
10.00IC500.1nMCHEMBL328445
10.00IC500.1nMCHEMBL316475
10.00IC500.1nMCHEMBL320386
10.00IC500.1nMCHEMBL93139
10.00IC500.1nMCHEMBL1649924
10.00Ki0.1nMCHEMBL140484
10.00IC500.1nMCHEMBL102826
9.96IC500.11nMCHEMBL2164217
9.89IC500.13nMCHEMBL157491
9.86IC500.137nMCHEMBL473558
9.80IC500.16nMCHEMBL461687
9.77IC500.17nMAZD-5363
9.74EC500.18nMCHEMBL2372983
9.72IC500.19nMCHEMBL3085308
9.70IC500.2nMCHEMBL171958
9.70IC500.2nMCHEMBL369235
9.70IC500.2nMCHEMBL21147
9.70IC500.2nMCHEMBL366770
9.70IC500.2nMCHEMBL173400
9.70IC500.2nMCHEMBL20622
9.70IC500.2nMCHEMBL174927
9.70IC500.2nMCENICRIVIROC MESYLATE
9.70IC500.2nMMARAVIROC
9.70IC500.2nMCHEMBL319593
9.70IC500.2nMCHEMBL99909
9.70IC500.2nMCHEMBL329893
9.70IC500.2nMCHEMBL431852
9.70IC500.2nMCHEMBL1649926
9.70IC500.2nMCHEMBL1649927
9.70IC500.2nMCHEMBL102826
9.70IC500.2nMCHEMBL1926893
9.70IC500.2nMCHEMBL322422
9.68IC500.21nMCHEMBL3085309
9.66IC500.22nMCHEMBL212731
9.64IC500.2301nMCHEMBL520091
9.64IC500.2301nMCHEMBL511493
9.64IC500.23nMCHEMBL520091

PubChem BioAssay actives

2787 with measured affinity, of 3784 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N-[(1S)-3-[4-[(3,4-dichlorophenyl)methylcarbamoyl-ethylamino]piperidin-1-yl]-1-phenylbutyl]cyclobutanecarboxamide393050: Antagonist activity at human recombinant CCR5 expressed in human HeLa-P4 cells assessed as inhibition of human HeLa-P4 cells binding to HIV1 gp160 expressing CHO cells by cell-cell fusion assayic50<0.0001uM
(4,6-dimethylpyrimidin-5-yl)-[4-methyl-4-[(3S)-3-methyl-4-[(1S)-1-[4-(trifluoromethyl)phenyl]ethyl]piperazin-1-yl]piperidin-1-yl]methanone42493: Inhibition of 0.1 nM of MIP-1beta induced migration of recombinant mouse pro-B cell line BA/F3 expressing human CCR5ic50<0.0001uM
(2R)-3-cyclopropyl-2-[(3S,4S)-3-[[4-[3,3-difluoro-3-(4-fluorophenyl)propyl]piperidin-1-yl]methyl]-4-(3-fluorophenyl)pyrrolidin-1-yl]propanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0001uM
(5E)-8-[4-(2-butoxyethoxy)phenyl]-1-(2-methylpropyl)-N-[4-[(S)-(3-propylimidazol-4-yl)methylsulfinyl]phenyl]-3,4-dihydro-2H-1-benzazocine-5-carboxamide;methanesulfonic acid261802: Inhibition of membrane fusion between HIV1 JR-FL Env-expressing COS7 cells and MOLT4/CCR5ic500.0001uM
N-[(1S)-1-(3-fluorophenyl)-3-[(1R,5S)-3-(2-methyl-5-propanoyl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1]octan-8-yl]propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-3-[4-(3-methyl-5-propan-2-yl-1,2,4-triazol-4-yl)piperidin-1-yl]-1-phenylbutyl]cyclopentanecarboxamide395483: Antagonist activity at human recombinant CCR5 expressed in human HeLa-P4 cells assessed as inhibition of human HeLa-P4 cells binding to HIV1 gp160 expressing CHO cells by cell-cell fusion assayic500.0001uM
6-chloro-2,4-dimethyl-N-[(3R)-3-[4-[[2-(2-oxo-1,3-oxazolidin-3-yl)acetyl]-(thiophen-3-ylmethyl)amino]piperidin-1-yl]butyl]pyridine-3-carboxamide696934: Antagonist activity at CCR5 receptor expressed in P4R5 cells co-expressing CD4, and LTR-beta-gal construct assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat cells expressing HIV-1 JRFLenv and HIV-1 Tat by beta-galactosidase activity based cell-cell fusion assayic500.0001uM
2-chloro-6-cyano-N-[(3R)-3-[4-[methoxycarbamoyl(thiophen-3-ylmethyl)amino]piperidin-1-yl]butyl]-4-methylpyridine-3-carboxamide696934: Antagonist activity at CCR5 receptor expressed in P4R5 cells co-expressing CD4, and LTR-beta-gal construct assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat cells expressing HIV-1 JRFLenv and HIV-1 Tat by beta-galactosidase activity based cell-cell fusion assayic500.0001uM
2,6-dichloro-N-[(3R)-3-[4-[methoxycarbamoyl(thiophen-3-ylmethyl)amino]piperidin-1-yl]butyl]-4-methylpyridine-3-carboxamide696934: Antagonist activity at CCR5 receptor expressed in P4R5 cells co-expressing CD4, and LTR-beta-gal construct assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat cells expressing HIV-1 JRFLenv and HIV-1 Tat by beta-galactosidase activity based cell-cell fusion assayic500.0001uM
(2S)-N-[(2S)-1-[[(2S,3R)-1-amino-3-hydroxy-1-oxobutan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]-2-[[(2S,3R)-2-[[(2S,3R)-2-[[(2S,3R)-2-[[(2S)-2-[[(2R)-2-aminopropanoyl]amino]-3-hydroxypropanoyl]amino]-3-hydroxybutanoyl]amino]-3-hydroxybutanoyl]amino]-3-hydroxybutanoyl]amino]butanediamide1928524: Antagonist activity at CCR5 (unknown origin) expressed in human HOS cells co-expressing HIV-1 FITC-gp120 Bal assessed inhibition of CD4 dependent gp120 Bal binding to CCR5 by western blot analysisic500.0001uM
(4-nitrophenyl)methyl N-[1-[(3S)-4-[benzenesulfonyl(methyl)amino]-3-methyl-3-phenylbutyl]piperidin-4-yl]-N-prop-2-enylcarbamate42496: Inhibitory concentration, binding towards C-C chemokine receptor type 5 using [125I]-MIP-1 alpha as radioligand expressed on CHO cellsic500.0001uM
(2R)-3-cyclobutyl-2-[(3S,4S)-3-(3-fluorophenyl)-4-[[4-[2-(4-fluorophenyl)sulfanylethyl]piperidin-1-yl]methyl]pyrrolidin-1-yl]propanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0001uM
(2R)-3-cyclopropyl-2-[(3S,4S)-3-phenyl-4-[[4-(3-phenylpropyl)piperidin-1-yl]methyl]pyrrolidin-1-yl]propanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0001uM
(4-nitrophenyl)methyl N-[1-[[(3aS,4S,5S)-4-phenylspiro[3a,4,5,6-tetrahydro-3H-pyrrolo[1,2-b][1,2]oxazole-2,1’-cyclohexane]-5-yl]methyl]piperidin-4-yl]-N-prop-2-enylcarbamate42378: Ability to displace [125I]-labeled MIP-1alpha from the C-C chemokine receptor type 5 expressed on CHO cell membranesic500.0001uM
N-[(1S)-3-[4-[[2-(3,4-dichlorophenyl)acetyl]-ethylamino]piperidin-1-yl]-1-phenylbutyl]cyclobutanecarboxamide393050: Antagonist activity at human recombinant CCR5 expressed in human HeLa-P4 cells assessed as inhibition of human HeLa-P4 cells binding to HIV1 gp160 expressing CHO cells by cell-cell fusion assayic500.0001uM
N-[(1S)-3-[4-[ethyl-[2-(4-methylsulfonylphenyl)acetyl]amino]piperidin-1-yl]-1-phenylbutyl]cyclobutanecarboxamide393050: Antagonist activity at human recombinant CCR5 expressed in human HeLa-P4 cells assessed as inhibition of human HeLa-P4 cells binding to HIV1 gp160 expressing CHO cells by cell-cell fusion assayic500.0001uM
(4-nitrophenyl)methyl N-[1-[[(3S,4S)-1-benzyl-4-phenylpyrrolidin-3-yl]methyl]piperidin-4-yl]-N-prop-2-enylcarbamate1957048: Inhibition of human CCR5ic500.0001uM
(2R)-2-cyclohexyl-2-[(3S,4S)-3-phenyl-4-[[4-(3-phenylpropyl)piperidin-1-yl]methyl]pyrrolidin-1-yl]acetic acid42379: In vitro binding affinity at CCR5 receptor in the presence of [125I]-MIP-1 alpha.ic500.0001uM
(2R)-2-cyclobutyl-2-[(3S,4S)-3-phenyl-4-[[4-(3-phenylpropyl)piperidin-1-yl]methyl]pyrrolidin-1-yl]acetic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0001uM
(2R)-3-cyclobutyl-2-[(3S,4S)-3-phenyl-4-[[4-(3-phenylpropyl)piperidin-1-yl]methyl]pyrrolidin-1-yl]propanoic acid241856: Displacement of [125I]-MIP-1 alpha from human C-C chemokine receptor type 5 expressed on CHO cell membranesic500.0001uM
methyl 1-[(1R,5S)-8-[(3S)-3-acetamido-3-(3-fluorophenyl)propyl]-8-azabicyclo[3.2.1]octan-3-yl]-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridine-5-carboxylate554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
propan-2-yl 3-[(1S,5R)-8-[(3S)-3-acetamido-3-phenylpropyl]-8-azabicyclo[3.2.1]octan-3-yl]-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridine-5-carboxylate554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-1-(3-fluorophenyl)-3-[(1R,5S)-3-(2-methyl-5-pyrimidin-4-yl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1]octan-8-yl]propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-1-(3-fluorophenyl)-3-[(1R,5S)-3-(2-methyl-5-pyrazin-2-yl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1]octan-8-yl]propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-3-[(1R,5S)-3-(5-acetyl-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1]octan-8-yl]-1-(3-fluorophenyl)propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-3-[(1R,5S)-3-(5-butanoyl-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl)-8-azabicyclo[3.2.1]octan-8-yl]-1-(3-fluorophenyl)propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-3-[(1R,5S)-3-[5-(2,2-dimethylpropanoyl)-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl]-8-azabicyclo[3.2.1]octan-8-yl]-1-(3-fluorophenyl)propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
methyl 3-[(1S,5R)-8-[(3S)-3-acetamido-3-(3-fluorophenyl)propyl]-8-azabicyclo[3.2.1]octan-3-yl]-2-methyl-6,7-dihydro-4H-imidazo[4,5-c]pyridine-5-carboxylate554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[(1S)-1-(3-fluorophenyl)-3-[(1R,5S)-3-[2-methyl-5-(2-methylpropanoyl)-6,7-dihydro-4H-imidazo[4,5-c]pyridin-1-yl]-8-azabicyclo[3.2.1]octan-8-yl]propyl]acetamide554132: Antagonist activity at CCR5 receptor expressed in HeLa-P4 cells co-expressing CD4 assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat10 cells after 20 hrs by cell-cell fusion assayic500.0001uM
N-[1-[(3R)-3-(3,5-dichlorophenyl)-3-(1-methylsulfonylpiperidin-4-yl)propyl]piperidin-4-yl]-N-ethyl-2-(4-methylsulfonylphenyl)acetamide645643: Displacement of [125I]MIP-1alpha from human recombinant CCR5 expressed in CHO cellsic500.0001uM
N-ethyl-2-(4-methylsulfonylphenyl)-N-[1-[(3R)-3-phenyl-3-[1-(trifluoromethylsulfonyl)piperidin-4-yl]propyl]piperidin-4-yl]acetamide645643: Displacement of [125I]MIP-1alpha from human recombinant CCR5 expressed in CHO cellsic500.0001uM
N-[1-[(3R)-3-(3,5-dimethylphenyl)-3-(1-methylsulfonylpiperidin-4-yl)propyl]piperidin-4-yl]-N-ethyl-2-(4-methylsulfonylphenyl)acetamide645643: Displacement of [125I]MIP-1alpha from human recombinant CCR5 expressed in CHO cellsic500.0001uM
5-N-[(3R)-3-[4-[4-methoxy-N-[(4-methyl-3-pyridinyl)methyl]anilino]piperidin-1-yl]butyl]-4,6-dimethyl-2-N-propan-2-ylpyridine-2,5-dicarboxamide635152: Antagonist activity against human CCR5 assessed as inhibition of HIV1 gp120-induced cell-cell fusion between human HeLa P4/R5 cells and CHO-tat10 cells expressing HIV-1JRFL viral envolop protein after 20 hrs by beta-galactosidase reporter gene assayic500.0001uM
6-chloro-2,4-dimethyl-N-[(3R)-3-[4-[pyridin-3-ylcarbamoyl(thiophen-3-ylmethyl)amino]piperidin-1-yl]butyl]pyridine-3-carboxamide696934: Antagonist activity at CCR5 receptor expressed in P4R5 cells co-expressing CD4, and LTR-beta-gal construct assessed as inhibition of infusion to HIV gp120 expressed in CHO-tat cells expressing HIV-1 JRFLenv and HIV-1 Tat by beta-galactosidase activity based cell-cell fusion assayic500.0001uM
[4-[4-[(E)-C-(4-bromophenyl)-N-ethoxycarbonimidoyl]piperidin-1-yl]-4-methylpiperidin-1-yl]-(2,6-dimethyl-4-pyridin-4-ylphenyl)methanone42506: Inhibition of RANTES binding to the human C-C chemokine receptor type 5 (CCR5)ki0.0001uM
1-[[(3S,4S)-1-(cyclohexylmethyl)-4-phenylpyrrolidin-3-yl]methyl]-4-[3-[4-(2H-tetrazol-5-yl)phenyl]propyl]piperidin-4-ol352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0002uM
(5E)-8-[4-(2-butoxyethoxy)phenyl]-1-[(1-methylpyrazol-4-yl)methyl]-N-[4-[(S)-(3-propylimidazol-4-yl)methylsulfinyl]phenyl]-3,4-dihydro-2H-1-benzazocine-5-carboxamide261802: Inhibition of membrane fusion between HIV1 JR-FL Env-expressing COS7 cells and MOLT4/CCR5ic500.0002uM
(5E)-8-[4-(2-butoxyethoxy)phenyl]-1-(2-methylpropyl)-N-[4-[(S)-(4-propyl-1,2,4-triazol-3-yl)methylsulfinyl]phenyl]-3,4-dihydro-2H-1-benzazocine-5-carboxamide261802: Inhibition of membrane fusion between HIV1 JR-FL Env-expressing COS7 cells and MOLT4/CCR5ic500.0002uM
6-chloro-N-[(3R)-3-[4-[4-methoxy-N-[(4-methyl-3-pyridinyl)methyl]anilino]piperidin-1-yl]butyl]-2,4-dimethylpyridine-3-carboxamide635152: Antagonist activity against human CCR5 assessed as inhibition of HIV1 gp120-induced cell-cell fusion between human HeLa P4/R5 cells and CHO-tat10 cells expressing HIV-1JRFL viral envolop protein after 20 hrs by beta-galactosidase reporter gene assayic500.0002uM
4,4-difluoro-N-[(1S)-3-[(1S,5R)-3-(3-methyl-5-propan-2-yl-1,2,4-triazol-4-yl)-8-azabicyclo[3.2.1]octan-8-yl]-1-phenylpropyl]cyclohexane-1-carboxamide1370975: Inhibition of CCR5 in human TZM-bl cells infected with HIV1 Bal R5 assessed as antiviral activity by measuring reduction in viral infection pre-incubated with cells followed by viral infection measured after 3 days by luciferase reporter gene assayic500.0002uM
(2R)-2-[(3S,4S)-3-[[4-(2-benzyl-1,3-thiazol-5-yl)piperidin-1-yl]methyl]-4-phenylpyrrolidin-1-yl]-3-cyclopropylpropanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0002uM
(2R)-2-[(3S,4S)-3-[[4-(2-benzyl-1,3-thiazol-5-yl)piperidin-1-yl]methyl]-4-phenylpyrrolidin-1-yl]-3-cyclobutylpropanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0002uM
(2R)-3-cyclobutyl-2-[(3S,4S)-3-(3-fluorophenyl)-4-[[4-[3-[4-(trifluoromethyl)phenyl]propyl]piperidin-1-yl]methyl]pyrrolidin-1-yl]propanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0002uM
(2R)-3-cyclobutyl-2-[(3S,4S)-3-[[4-[3,3-difluoro-3-(4-fluorophenyl)propyl]piperidin-1-yl]methyl]-4-phenylpyrrolidin-1-yl]propanoic acid352100: Displacement of [125I]MIP1alpha from human CCR5 expressed in CHO cellsic500.0002uM
1-[[(3S,4S)-1-(cyclohexylmethyl)-4-phenylpyrrolidin-3-yl]methyl]-4-[3-[4-(1-methyltetrazol-5-yl)phenyl]propyl]piperidin-4-ol42380: Displacement of [125I]-labeled MIP-1alpha from the C-C chemokine receptor type 5 expressed on CHO cell membranesic500.0002uM
2-[(3S)-3-[[4-(2-benzyl-1,3-thiazol-5-yl)piperidin-1-yl]methyl]-4-phenylpyrrolidin-1-yl]-3-cyclobutylpropanoic acid42495: Inhibition of human C-C chemokine receptor type 5 assayed using [125I]-MIP-1 alpha as radioligandic500.0002uM
2-[(3S)-3-[[4-(2-benzyl-1,3-thiazol-5-yl)piperidin-1-yl]methyl]-4-phenylpyrrolidin-1-yl]-3-cyclopropylpropanoic acid42495: Inhibition of human C-C chemokine receptor type 5 assayed using [125I]-MIP-1 alpha as radioligandic500.0002uM
N-[(1S)-3-[4-[benzylcarbamoyl(ethyl)amino]piperidin-1-yl]-1-phenylbutyl]cyclobutanecarboxamide393050: Antagonist activity at human recombinant CCR5 expressed in human HeLa-P4 cells assessed as inhibition of human HeLa-P4 cells binding to HIV1 gp160 expressing CHO cells by cell-cell fusion assayic500.0002uM
(4-nitrophenyl)methyl N-[1-[[(3S,4S)-1-benzoyl-4-phenylpyrrolidin-3-yl]methyl]piperidin-4-yl]-N-prop-2-enylcarbamate42496: Inhibitory concentration, binding towards C-C chemokine receptor type 5 using [125I]-MIP-1 alpha as radioligand expressed on CHO cellsic500.0002uM
(4-nitrophenyl)methyl N-[1-[[(3S,4S)-1-(cyclopentanecarbonyl)-4-phenylpyrrolidin-3-yl]methyl]piperidin-4-yl]-N-prop-2-enylcarbamate42496: Inhibitory concentration, binding towards C-C chemokine receptor type 5 using [125I]-MIP-1 alpha as radioligand expressed on CHO cellsic500.0002uM

CTD chemical–gene interactions

59 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Maravirocdecreases reaction, increases expression, affects binding, decreases activity3
Benzo(a)pyreneaffects methylation, increases expression2
Eugenolincreases expression2
Nickelaffects expression, increases expression, decreases reaction2
Simvastatindecreases expression, decreases reaction, increases expression2
GSK-J4decreases expression1
isopentenyl pyrophosphatedecreases expression1
triphenyl phosphateaffects expression1
captaxincreases expression1
trichostatin Aaffects expression, decreases reaction1
proanthocyanidindecreases expression1
indole-3-carbinolincreases expression1
3-chlorophenoldecreases expression1
2,4-dinitrofluorobenzene sulfonic acidincreases expression1
di-n-butylphosphoric acidaffects expression1
CGP 52608affects binding, increases reaction1
2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-oneaffects binding, decreases reaction, increases activity, increases expression1
enniatinsdecreases expression1
cirsimarindecreases expression1
TAK 779affects binding, decreases reaction1
N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloridedecreases expression, decreases reaction, affects cotreatment1
Ancrivirocaffects binding, decreases reaction1
bardoxolone methylincreases expression, increases reaction1
vicrivirocaffects binding, decreases reaction1
aplavirocaffects binding, decreases reaction1
PF 232798affects binding, decreases activity1
bisphenol Sdecreases methylation1
gardiquimodincreases expression, decreases reaction1
(+)-JQ1 compounddecreases expression1
Air Pollutantsincreases abundance, increases expression1

ChEMBL screening assays

409 unique, capped per target: 243 binding, 166 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1000791BindingDisplacement of [125I]gp-120 from human CCR5 receptor expressed in CHO cellsIsolation and structure of antagonists of chemokine receptor (CCR5). — *J Nat Prod*
CHEMBL1055686FunctionalInhibition of human CCR5 expressed in mouse B300-19 cells assessed as inhibition of RANTES-induced calcium flux at 10 uMSynthesis, biological evaluation, and metabolic stability of acrylamide derivatives as novel CCR3 antagonists. — *Bioorg Med Chem*

Cellosaurus cell lines

61 cell lines: 45 cancer cell line, 6 spontaneously immortalized cell line, 5 transformed cell line, 5 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_0C87MOCHACancer cell lineMale
CVCL_1D98HOS-CD4-CCR5Cancer cell lineFemale
CVCL_1E08GHOST(3).R3/X4/R5Cancer cell lineFemale
CVCL_1E10GHOST(3).X4/R5Cancer cell lineFemale
CVCL_1E153T3.T4.CCR5Transformed cell lineMale
CVCL_1E17GHOST(3).Hi-5Cancer cell lineFemale
CVCL_1F85U373-MAGI-CCR5Cancer cell lineMale
CVCL_1G50Cf2Th-CCR5Spontaneously immortalized cell lineFemale
CVCL_1H19HOS-CCR5Cancer cell lineFemale
CVCL_1H21HeLa-P4-R5 MAGICancer cell lineFemale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for CCR5 across ~30M SureChEMBL compounds — explore on Sugi Predict.