CCR8

gene
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Also known as CY6TER1CKR-L1GPR-CY6CDw198

Summary

CCR8 (C-C motif chemokine receptor 8, HGNC:1609) is a protein-coding gene on chromosome 3p22.1, encoding C-C chemokine receptor type 8 (P51685). G protein-coupled receptor that can bind a variety of chemokines, such as CCL1, CCL8, CCL16, CCL18.

This gene encodes a member of the beta chemokine receptor family, which is predicted to be a seven transmembrane protein similar to G protein-coupled receptors. Chemokines and their receptors are important for the migration of various cell types into the inflammatory sites. This receptor protein preferentially expresses in the thymus. I-309, thymus activation-regulated cytokine (TARC) and macrophage inflammatory protein-1 beta (MIP-1 beta) have been identified as ligands of this receptor. Studies of this receptor and its ligands suggested its role in regulation of monocyte chemotaxis and thymic cell apoptosis. More specifically, this receptor may contribute to the proper positioning of activated T cells within the antigenic challenge sites and specialized areas of lymphoid tissues. This gene is located at the chemokine receptor gene cluster region.

Source: NCBI Gene 1237 — RefSeq curated summary.

At a glance

  • GWAS associations: 2
  • Clinical variants (ClinVar): 51 total
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_005201

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:1609
Approved symbolCCR8
NameC-C motif chemokine receptor 8
Location3p22.1
Locus typegene with protein product
StatusApproved
AliasesCY6, TER1, CKR-L1, GPR-CY6, CDw198
Ensembl geneENSG00000179934
Ensembl biotypeprotein_coding
OMIM601834
Entrez1237

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 protein_coding

ENST00000326306, ENST00000414803

RefSeq mRNA: 1 — MANE Select: NM_005201 NM_005201

CCDS: CCDS2684

Canonical transcript exons

ENST00000326306 — 2 exons

ExonStartEnd
ENSE000012884423932970939329829
ENSE000012884523933231839333680

Expression profiles

Bgee: expression breadth broad, 38 present calls, max score 92.66.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5692 / max 145.6795, expressed in 90 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
361260.364770
361250.138047
361270.042323
361240.024012

Top tissues by expression

262 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099192.66gold quality
buccal mucosa cellCL:000233668.21gold quality
type B pancreatic cellCL:000016967.00gold quality
diaphragmUBERON:000110363.08gold quality
granulocyteCL:000009461.26gold quality
periodontal ligamentUBERON:000826660.79gold quality
vermiform appendixUBERON:000115459.28gold quality
mucosa of urinary bladderUBERON:000125957.61gold quality
gall bladderUBERON:000211057.61gold quality
mucosa of paranasal sinusUBERON:000503056.70gold quality
caecumUBERON:000115356.46gold quality
trabecular bone tissueUBERON:000248354.84gold quality
lymph nodeUBERON:000002954.61gold quality
ileal mucosaUBERON:000033154.07silver quality
skin of hipUBERON:000155453.60silver quality
thymusUBERON:000237053.26gold quality
upper leg skinUBERON:000426252.65silver quality
epithelial cell of pancreasCL:000008352.06gold quality
bloodUBERON:000017850.82gold quality
frontal poleUBERON:000279550.41gold quality
middle frontal gyrusUBERON:000270250.30gold quality
quadriceps femorisUBERON:000137750.27gold quality
paraflocculusUBERON:000535150.18gold quality
Brodmann (1909) area 10UBERON:001354150.18gold quality
pancreatic ductal cellCL:000207950.06silver quality
vastus lateralisUBERON:000137949.32gold quality
Brodmann (1909) area 46UBERON:000648349.30gold quality
blood vessel layerUBERON:000479749.29gold quality
cerebellar vermisUBERON:000472049.25gold quality
cervix squamous epitheliumUBERON:000692249.20gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-CURD-89yes580.64
E-ANND-3no2.76

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): STAT6

miRNA regulators (miRDB)

16 targeting CCR8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-12118100.0065.881270
HSA-MIR-513A-5P100.0069.772465
HSA-MIR-6891-5P99.9866.531372
HSA-MIR-3173-3P99.9866.491217
HSA-MIR-430799.8270.453374
HSA-MIR-3614-5P99.3065.25837
HSA-MIR-196A-3P99.1967.341204
HSA-MIR-511-5P98.9770.942268
HSA-MIR-501-5P98.7768.881328
HSA-MIR-4755-3P98.7765.591915
HSA-MIR-500A-5P98.7669.131241
HSA-MIR-1178-3P98.5767.09890
HSA-MIR-428998.2666.90810
HSA-MIR-124-5P98.1167.651095
HSA-MIR-1255B-2-3P97.8067.04880
HSA-MIR-464297.5267.60916

Literature-anchored findings (GeneRIF, showing 35)

  • CCR8 mediates rescue from dexamethasone-induced apoptosis via an ERK-dependent pathway (PMID:12525579)
  • found in the central nervous system and is associated with phagocytic macrophages (PMID:12547701)
  • CCR8 genes and surrounding genomic regions these genes are the result of the duplication of an ancestral gene prior to the divergence of teleost fish. (PMID:12551893)
  • Transfected human CCR8-dependent activation of the RAS/MAPK pathway mediates anti-apoptotic activity of I-309/ CCL1 and vMIP-I. (PMID:12645948)
  • The induction of CCR8 under conditions associated with vascular smooth muscle cell proliferation and migration raises the possibility that CCR8 may play an important role in vessel wall pathology. (PMID:14576057)
  • the axis CCL1-CCR8 links adaptive and innate immune functions that play a role in the initiation and amplification of atopic skin inflammation (PMID:15814739)
  • CCR8 ligands are allotropic, binding to distinct sites within CCR8; the human immune system may have evolved to use CCL7 as a selective antagonist of viral chemokine activity at CCR8 but not those of the host ligand (PMID:17023422)
  • CCR8 is expressed by a small and heterogeneous population of peripheral blood CD4 memory T cells enriched in T helper type 2 (Th2) effector and T regulatory (Treg) cells. (PMID:17082609)
  • CCR8-expressing CD4-positive T lymphocytes are preferentially recruited from the periphery into the lungs of asthmatic individuals, driven by elevated CCL1 levels produced almost exclusively by mast cells and basophils. (PMID:17641040)
  • The combination of 17beta-E(2) with the environmental pollutant TCDD is involved in the pathogenesis of endometriosis via up-regulating the chemokine CCR8-I-309. (PMID:17693327)
  • There may be a role for CCR8 in the recruitment of T cells to the lung in asthmatics. (PMID:20455898)
  • The functional data from human macrophages suggest a potential cross talk between the CCR8 and the Toll-like receptor 4 (TLR4) pathways, both of which are present in chronic obstructive pulmonary disease patients. (PMID:21976223)
  • C-terminal clipping of chemokine CCL1/I-309 enhances CCR8-mediated intracellular calcium release and anti-apoptotic activity (PMID:22479563)
  • Data show that CCR8 expression by newly activated naive T cells is regulated by skin-specific factor(s) derived primarily from epidermal keratinocytes. (PMID:23043070)
  • CCR8(+) myeloid cell subset is expanded in patients with cancer. (PMID:23363815)
  • CCL1-CCR8 interaction may play a critical role in lymphocytic recruitment in IgG4-related sclerosing cholangitis and type 1 autoimmune pancreatitis, leading to duct-centred inflammation and obliterative phlebitis. (PMID:23811304)
  • Identification of human CCR8 as a CCL18 receptor. (PMID:23999500)
  • findings suggest that CCR8 expression in ALCL is more closely related to the presence of DUSP22 rearrangements than to cutaneous involvement and that the function of CCR8 may extend beyond its skin-homing properties in this disease (PMID:25390351)
  • Epidermal-derived vitamin D3 metabolites and prostaglandins provide an essential cue for the localization of CCR8+ immune surveillance T cells within healthy human skin. (PMID:26002980)
  • High CCR8 expression is associated with high recurrence in kidney cancer. (PMID:26716905)
  • Role of Conserved Disulfide Bridges and Aromatic Residues in Extracellular Loop 2 of Chemokine Receptor CCR8 for Chemokine and Small Molecule Binding. (PMID:27226537)
  • Authors demonstrate the pivotal role of CCR8(+) Treg cells in restraining immunity and highlight the potential clinical implications of this discovery. (PMID:28533380)
  • Long-lived memory T cells in human skin can be defined by the expression of CCR8. (PMID:29427415)
  • Blocking CCR8 via a small molecule inhibitor or short hairpin (sh)RNA mitigated the decrease in Ecadherin, and increase in MMP2 and VEGFC, caused by human recombinant (r)CCL18. CCR8 knockdown by shRNA reversed rCCL18induced cancer cell invasion, migration and epithelialmesenchymal transition (PMID:30592282)
  • ARNT-dependent CCR8 reprogrammed LDH isoform expression correlates with poor clinical outcomes of prostate cancer. (PMID:32319143)
  • Clinical and prognostic significance of CC chemokine receptor type 8 protein expression in gastrointestinal stromal tumors. (PMID:32884223)
  • Chemokine (C-C Motif) Ligand 1 Derived from Tumor-Associated Macrophages Contributes to Esophageal Squamous Cell Carcinoma Progression via CCR8-Mediated Akt/Proline-Rich Akt Substrate of 40 kDa/Mammalian Target of Rapamycin Pathway. (PMID:33460563)
  • Immunomodulation of T Helper Cells by Tumor Microenvironment in Oral Cancer Is Associated With CCR8 Expression and Rapid Membrane Vitamin D Signaling Pathway. (PMID:34025655)
  • Chemokine CCL18 Promotes Phagocytosis Through Its Receptor CCR8 Rather than PITPNM3 in Human Microglial Cells. (PMID:35041514)
  • CCR8-targeted specific depletion of clonally expanded Treg cells in tumor tissues evokes potent tumor immunity with long-lasting memory. (PMID:35140181)
  • Differential expression of CCR8 in tumors versus normal tissue allows specific depletion of tumor-infiltrating T regulatory cells by GS-1811, a novel Fc-optimized anti-CCR8 antibody. (PMID:36352891)
  • Development of a cellular model to study CCR8 signaling in tumor-infiltrating regulatory T cells. (PMID:38231448)
  • Unveiling the structural mechanisms of nonpeptide ligand recognition and activation in human chemokine receptor CCR8. (PMID:38306437)
  • Cryo-EM Structure and Biochemical Analysis of the Human Chemokine Receptor CCR8. (PMID:38985857)
  • The chemokine receptor CCR8 is not a high-affinity receptor for the human chemokine CCL18. (PMID:39259753)

Cross-species orthologs

8 orthologs

OrganismSymbolGene ID
danio_rerioccr11.1ENSDARG00000070755
danio_rerioccr2ENSDARG00000079829
danio_reriocabz01093075.1ENSDARG00000086616
danio_rerioccr8.1ENSDARG00000095789
danio_reriosi:ch211-207g17.3ENSDARG00000105363
danio_reriosi:cabz01093077.1ENSDARG00000105467
mus_musculusCcr8ENSMUSG00000042262
rattus_norvegicusCcr8ENSRNOG00000026759

Paralogs (23): CCR6 (ENSG00000112486), CCRL2 (ENSG00000121797), CCR2 (ENSG00000121807), CXCR4 (ENSG00000121966), CCR7 (ENSG00000126353), ACKR4 (ENSG00000129048), ACKR3 (ENSG00000144476), ACKR2 (ENSG00000144648), RGR (ENSG00000148604), CXCR5 (ENSG00000160683), CCR5 (ENSG00000160791), CXCR1 (ENSG00000163464), CCR1 (ENSG00000163823), CX3CR1 (ENSG00000168329), CXCR6 (ENSG00000172215), XCR1 (ENSG00000173578), CCR9 (ENSG00000173585), CXCR2 (ENSG00000180871), GALR2 (ENSG00000182687), CCR3 (ENSG00000183625), CCR4 (ENSG00000183813), CCR10 (ENSG00000184451), CXCR3 (ENSG00000186810)

Protein

Protein identifiers

C-C chemokine receptor type 8P51685 (reviewed: P51685)

Alternative names: CC chemokine receptor CHEMR1, CMKBRL2, Chemokine receptor-like 1, GPR-CY6, TER1

All UniProt accessions (2): P51685, C9JIP9

UniProt curated annotations — full annotation on UniProt →

Function. G protein-coupled receptor that can bind a variety of chemokines, such as CCL1, CCL8, CCL16, CCL18. Regulates monocyte and eosinophil chemotaxis. Undergoes internalization upon CCL18 binding, leading to induced migration and calcium flux of highly polarized Th2 cells. In microglial cells, promotes phagocytosis with CCL18 through NF-kappa-B and Src signaling pathways. Stimulation of the CCL1-CCR8 signaling axis protects the gut from acute intestinal damage. (Microbial infection) Acts as a coreceptor for HIV-1 and HIV-2 viruses. (Microbial infection) Acts as a receptor for Kaposi virus protein vCCL1/K6 and thereby inhibits apoptosis in the targeted cells.

Subunit / interactions. Interacts with GNAI1. (Microbial infection) Interacts with Kaposi virus proteins vCCL1 and vCCL2.

Subcellular location. Cell membrane.

Tissue specificity. Expressed in unstimulated CD4(+) and CD8(+) T-cells and polymorphonuclear cells.

Similarity. Belongs to the G-protein coupled receptor 1 family.

Isoforms (2)

UniProt IDNamesCanonical?
P51685-11yes
P51685-22

RefSeq proteins (1): NP_005192* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR000355Chemokine_rcptFamily
IPR004068Chemokine_CCR8Family
IPR017452GPCR_Rhodpsn_7TMDomain
IPR050119CCR1-9-likeFamily

Pfam: PF00001

UniProt features (38 total): helix 9, topological domain 8, transmembrane region 7, mutagenesis site 3, strand 3, turn 3, disulfide bond 2, chain 1, splice variant 1, sequence variant 1

Structure

Experimental structures (PDB)

6 structures.

PDBMethodResolution (Å)
8XMLELECTRON MICROSCOPY2.58
8TLMELECTRON MICROSCOPY2.9
8KFXELECTRON MICROSCOPY2.96
8KFYELECTRON MICROSCOPY3.06
8U1UELECTRON MICROSCOPY3.1
8KFZELECTRON MICROSCOPY3.3

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P51685-F182.210.57

Antibody-complex structures (SAbDab): 68KFX, 8KFY, 8KFZ, 8TLM, 8U1U, 8XML

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Disulfide bonds (2): 25–272, 106–183

Mutagenesis-validated functional residues (3):

PositionPhenotype
113strong decrease in ability to mediate calcium mobilization.
172strong decrease in ability to mediate calcium mobilization.
286strong decrease in ability to mediate calcium mobilization.

Function

Pathways and Gene Ontology

Reactome pathways

8 pathways

IDPathway
R-HSA-380108Chemokine receptors bind chemokines
R-HSA-418594G alpha (i) signalling events
R-HSA-162582Signal Transduction
R-HSA-372790Signaling by GPCR
R-HSA-373076Class A/1 (Rhodopsin-like receptors)
R-HSA-375276Peptide ligand-binding receptors
R-HSA-388396GPCR downstream signalling
R-HSA-500792GPCR ligand binding

MSigDB gene sets: 122 (showing top): GOBP_CELL_CHEMOTAXIS, GOBP_RESPONSE_TO_PEPTIDE, MODULE_64, GOCC_CELL_SURFACE, GOBP_TAXIS, REACTOME_PEPTIDE_LIGAND_BINDING_RECEPTORS, MODULE_289, chr3p22, GAVIN_FOXP3_TARGETS_CLUSTER_P3, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, GOCC_SIDE_OF_MEMBRANE, BOCHKIS_FOXA2_TARGETS, GOMF_CYTOKINE_BINDING, REACTOME_CLASS_A_1_RHODOPSIN_LIKE_RECEPTORS, GOMF_TRANSMEMBRANE_SIGNALING_RECEPTOR_ACTIVITY

GO Biological Process (11): chemotaxis (GO:0006935), immune response (GO:0006955), cell adhesion (GO:0007155), G protein-coupled receptor signaling pathway (GO:0007186), positive regulation of cytosolic calcium ion concentration (GO:0007204), calcium-mediated signaling (GO:0019722), cell chemotaxis (GO:0060326), signal transduction (GO:0007165), cell surface receptor signaling pathway (GO:0007166), chemokine-mediated signaling pathway (GO:0070098), cellular response to cytokine stimulus (GO:0071345)

GO Molecular Function (5): G protein-coupled receptor activity (GO:0004930), chemokine receptor activity (GO:0004950), coreceptor activity (GO:0015026), C-C chemokine receptor activity (GO:0016493), C-C chemokine binding (GO:0019957)

GO Cellular Component (3): plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-6 pathways:

CategoryPathways
Signaling by GPCR2
Peptide ligand-binding receptors1
GPCR downstream signalling1
Signal Transduction1
GPCR ligand binding1
Class A/1 (Rhodopsin-like receptors)1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular process2
signal transduction2
G protein-coupled receptor signaling pathway2
chemokine binding2
response to chemical1
taxis1
immune system process1
response to stimulus1
G protein-coupled receptor activity1
regulation of biological quality1
intracellular signaling cassette1
chemotaxis1
cell migration1
cellular response to chemical stimulus1
cell communication1
signaling1
regulation of cellular process1
cellular response to stimulus1
cytokine-mediated signaling pathway1
cellular response to chemokine1
response to cytokine1
transmembrane signaling receptor activity1
G protein-coupled chemoattractant receptor activity1
cytokine receptor activity1
chemokine-mediated signaling pathway1
signaling receptor activity1
chemokine receptor activity1
C-C chemokine binding1
membrane1
cell periphery1
plasma membrane1
cell surface1
side of membrane1
cellular anatomical structure1

Protein interactions and networks

STRING

1230 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CCR8CCL1P22362997
CCR8CCL17Q92583992
CCR8CCL18P55774992
CCR8CCL22O00626988
CCR8CCL4P13236951
CCR8CCL8P78388939
CCR8CCL16O15467916
CCR8TERTO14746880
CCR8CCL20P78556856
CCR8CCR2P41597828
CCR8CCR3P51677821
CCR8CCL5P13501809
CCR8CCRL2O00421795
CCR8CCL19Q99731791
CCR8CCL2P13500783

IntAct

22 interactions, top by confidence:

ABTypeScore
CCR8RAMP1psi-mi:“MI:0915”(physical association)0.400
RAMP1CCR8psi-mi:“MI:0915”(physical association)0.400
CCR8RAMP2psi-mi:“MI:0915”(physical association)0.400
RAMP3CCR8psi-mi:“MI:0915”(physical association)0.400
RAMP2CCR8psi-mi:“MI:0915”(physical association)0.400
CCR8RAMP3psi-mi:“MI:0915”(physical association)0.400
SPP1CCR8psi-mi:“MI:0915”(physical association)0.370
SPNS1CCR8psi-mi:“MI:0915”(physical association)0.370
RTN3CCR8psi-mi:“MI:0915”(physical association)0.370
PAQR6CCR8psi-mi:“MI:0915”(physical association)0.370
NAGPACCR8psi-mi:“MI:0915”(physical association)0.370
THY1CCR8psi-mi:“MI:0915”(physical association)0.370
ATP2A1CCR8psi-mi:“MI:0915”(physical association)0.370
ERGIC3CCR8psi-mi:“MI:0915”(physical association)0.370
GABRDCCR8psi-mi:“MI:0915”(physical association)0.370
PLEKHB1CCR8psi-mi:“MI:0915”(physical association)0.370
UCKL1CCR8psi-mi:“MI:0915”(physical association)0.370
EI24CCR8psi-mi:“MI:0915”(physical association)0.370
GABBR1CCR8psi-mi:“MI:0915”(physical association)0.370

BioGRID (14): SPP1 (Two-hybrid), SPNS1 (Two-hybrid), RTN3 (Two-hybrid), PAQR6 (Two-hybrid), NAGPA (Two-hybrid), THY1 (Two-hybrid), ATP2A1 (Two-hybrid), ERGIC3 (Two-hybrid), GABRD (Two-hybrid), PLEKHB1 (Two-hybrid), UCKL1 (Two-hybrid), EI24 (Two-hybrid), GABBR1 (Two-hybrid), CCR8 (Affinity Capture-MS)

ESM2 similar proteins: A0A4W3GG95, B0F9W3, B3G515, E7FEL0, F7EQ49, O00398, O08878, O46685, O70526, O97665, P25023, P25105, P30411, P32299, P46093, P47774, P49684, P50132, P51679, P51680, P51685, P51686, P55085, P55086, P56484, P79960, Q15743, Q1JQB3, Q1WLP9, Q28642, Q2HJA4, Q2TAD5, Q4KLH9, Q4VA82, Q63645, Q80Z39, Q8BFQ3, Q8BFU7, Q8BLG2, Q8BMP4

Diamond homologs: A0A287A2K5, C8YUV0, O00155, O02836, O08786, O15973, O18935, O19012, O19014, O19025, O19032, O19054, O19091, O62729, O77408, O77700, O77721, O77830, O97665, O97772, P04761, P08482, P0C5I1, P11229, P12657, P17200, P18089, P19328, P22270, P25021, P30545, P30551, P30552, P30553, P30796, P32211, P32238, P32239, P32302, P46627

SIGNOR signaling

1 interactions.

AEffectBMechanism
CCL1up-regulatesCCR8binding

Disease & clinical

Clinical variants and AI predictions

ClinVar

51 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance43
Likely benign4
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

470 predictions. Top by Δscore:

VariantEffectΔscore
3:39329830:G:GGdonor_gain1.0000
3:39329830:GTAT:Gdonor_loss1.0000
3:39332316:A:ACacceptor_loss1.0000
3:39329828:AG:Adonor_gain0.9900
3:39329829:GG:Gdonor_gain0.9900
3:39332309:T:TAacceptor_gain0.9900
3:39332311:T:TAacceptor_gain0.9900
3:39332316:A:AGacceptor_gain0.9900
3:39332317:G:GGacceptor_gain0.9900
3:39332603:A:AGacceptor_gain0.9900
3:39332604:G:GGacceptor_gain0.9900
3:39329825:CTAAG:Cdonor_gain0.9800
3:39332317:GGT:Gacceptor_gain0.9800
3:39332317:GGTC:Gacceptor_gain0.9700
3:39332604:GACCT:Gacceptor_gain0.9700
3:39329826:TAAG:Tdonor_gain0.9600
3:39329827:AAG:Adonor_gain0.9600
3:39330787:G:GGdonor_gain0.9500
3:39332301:T:Gacceptor_gain0.9500
3:39332317:GGTCC:Gacceptor_gain0.9500
3:39332599:TTTCA:Tacceptor_loss0.9500
3:39332600:TTCAG:Tacceptor_loss0.9500
3:39332601:TCAGA:Tacceptor_loss0.9500
3:39332602:CAGA:Cacceptor_loss0.9500
3:39332603:AGAC:Aacceptor_loss0.9500
3:39332604:G:Tacceptor_loss0.9500
3:39332316:AG:Aacceptor_gain0.9300
3:39332317:GG:Gacceptor_gain0.9300
3:39332604:GAC:Gacceptor_gain0.9300
3:39332303:T:TAacceptor_gain0.9100

AlphaMissense

2356 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
3:39332713:A:CS128R0.996
3:39332715:T:AS128R0.996
3:39332715:T:GS128R0.996
3:39332628:G:CW99C0.995
3:39332628:G:TW99C0.995
3:39332803:T:AW158R0.993
3:39332803:T:CW158R0.993
3:39332626:T:AW99R0.992
3:39332626:T:CW99R0.992
3:39333250:T:CF307L0.991
3:39333252:C:AF307L0.991
3:39333252:C:GF307L0.991
3:39332647:T:AC106S0.990
3:39332648:G:CC106S0.990
3:39332686:A:CS119R0.990
3:39332688:C:AS119R0.990
3:39332688:C:GS119R0.990
3:39332878:T:AC183S0.990
3:39332879:G:CC183S0.990
3:39332476:A:CS49R0.988
3:39332478:T:AS49R0.988
3:39332478:T:GS49R0.988
3:39332878:T:CC183R0.985
3:39333089:C:GP253R0.985
3:39332647:T:CC106R0.983
3:39332880:T:GC183W0.983
3:39332490:C:AN53K0.981
3:39332490:C:GN53K0.981
3:39332648:G:AC106Y0.981
3:39332649:C:GC106W0.981

dbSNP variants (sampled 300 via entrez): RS1000796519 (3:39330857 T>A,C), RS1000878714 (3:39332009 C>T), RS1001187760 (3:39330410 G>A,T), RS1002149306 (3:39330236 G>C), RS1002246639 (3:39330531 A>G), RS1002875454 (3:39332464 C>T), RS1003519559 (3:39328910 C>T), RS1004226735 (3:39328679 A>G), RS1004363206 (3:39332671 T>C), RS1004665543 (3:39332310 G>A,C), RS1006034691 (3:39331237 G>T), RS1006338914 (3:39330753 C>A,T), RS1007109339 (3:39328047 G>T), RS1007258564 (3:39331660 G>A), RS1007330680 (3:39331396 C>T)

Disease associations

OMIM: gene MIM:601834 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

2 associations (top):

StudyTraitp-value
GCST003518_42Daytime sleep phenotypes8.000000e-06
GCST007932_44Medication use (thyroid preparations)4.000000e-11

EFO canonical traits (2, from GWAS)

EFO IDTrait name
EFO:0007828daytime rest measurement
EFO:0009933Thyroid preparation use measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL4596 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 748 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL2205807ABAMETAPIR4748

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — Chemokine receptors

Most potent curated ligand interactions (7 total), top 7:

LigandActionAffinityParameter
vMIP-IFull agonist9.9pIC50
CCL1Full agonist9.8pIC50
[125I]CCL1 (human)Full agonist9.7pKd
vMCC-IAntagonist9.41pIC50
[125I]CCL1 (mouse)Full agonist8.7pKd
vMIP-IIAntagonist8.1pIC50
ZK 756326Full agonist5.7pIC50

ChEMBL bioactivities

248 potent at pChembl≥5 of 256 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.77Ki0.17nMCHEMBL218374
9.52Ki0.3nMCHEMBL374939
9.52IC500.3nMCHEMBL374939
9.15Ki0.7nMCHEMBL386308
9.15Ki0.7nMCHEMBL221865
9.00IC501nMCHEMBL205993
9.00Ki1nMCHEMBL386308
9.00IC501nMCHEMBL5424187
8.96Ki1.1nMCHEMBL373739
8.92IC501.2nMCHEMBL5404620
8.89IC501.3nMCHEMBL5397693
8.82Ki1.5nMCHEMBL375854
8.80Ki1.6nMCHEMBL218375
8.80Ki1.6nMCHEMBL221867
8.80Ki1.6nMCHEMBL376910
8.77IC501.7nMCHEMBL5411391
8.77IC501.7nMCHEMBL5412884
8.66Ki2.2nMCHEMBL220701
8.64Ki2.3nMCHEMBL218037
8.62IC502.399nMCHEMBL567417
8.60Ki2.5nMCHEMBL220753
8.58IC502.63nMCHEMBL568523
8.58IC502.63nMCHEMBL579072
8.55IC502.818nMCHEMBL568294
8.46Ki3.5nMCHEMBL221130
8.40IC504nMCHEMBL380492
8.40IC504nMCHEMBL5399936
8.40IC504nMCHEMBL221251
8.39Ki4.1nMCHEMBL221904
8.38Ki4.2nMCHEMBL221251
8.38Ki4.2nMCHEMBL385108
8.38IC504.2nMCHEMBL374527
8.36Ki4.4nMCHEMBL218503
8.31IC504.898nMCHEMBL574655
8.29IC505.1nMCHEMBL221790
8.28Ki5.21nMCHEMBL375315
8.27Ki5.4nMCHEMBL218036
8.25IC505.623nMCHEMBL568522
8.22Ki6nMCHEMBL205993
8.22IC506nMCHEMBL5404280
8.22IC506nMCHEMBL5412094
8.21IC506.1nMCHEMBL221586
8.20Ki6.3nMCHEMBL218218
8.18IC506.607nMCHEMBL584087
8.17Ki6.7nMCHEMBL221977
8.16IC506.9nMCHEMBL218297
8.14Ki7.2nMCHEMBL374979
8.12IC507.65nMCHEMBL220652
8.09IC508.128nMCHEMBL566543
8.07IC508.44nMCHEMBL5407071

PubChem BioAssay actives

248 with measured affinity, of 394 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
ethyl 4-[(4-benzamidonaphthalen-1-yl)sulfonylamino]piperidine-1-carboxylate277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0002uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0003uM
2-methyl-N-[4-[[1-[(2S)-pyrrolidine-2-carbonyl]piperidin-4-yl]sulfamoyl]naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0007uM
N-methyl-4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0007uM
2-[3-[[1-[[3-(2-chlorophenoxy)phenyl]methyl]piperidin-4-yl]carbamoyl]-3-phenylpyrrolidin-1-yl]-2-methylpropanoic acid264168: Inhibition of I309-induced chemotaxis in L1.2 cells expressing CCR8ic500.0010uM
N-[2-chloro-6-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]-2-methylbenzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0010uM
2-methyl-N-[4-[[1-(pyrrolidine-1-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0011uM
2-methyl-N-[4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]naphthalen-1-yl]benzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0012uM
3-chloro-2-methyl-N-[2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]benzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0013uM
N-[4-[[1-(azetidine-3-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0015uM
ethyl 4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxylate277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0016uM
N,N-dimethyl-4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0016uM
N-[4-[[1-(4-aminobutanoyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0016uM
4-chloro-2-methyl-N-[2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]benzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0017uM
5-chloro-2-methyl-N-[2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]benzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0017uM
N-ethyl-4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0022uM
ethyl 4-[(5-benzamidonaphthalen-1-yl)sulfonylamino]piperidine-1-carboxylate277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0023uM
(5-amino-2-pyridinyl)-[9-[(2-ethyl-2-propyl-3H-1-benzofuran-4-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0024uM
2-methyl-N-[4-[(1-propanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0025uM
(5-amino-2-pyridinyl)-[9-[(2,2-dimethyl-3H-1-benzofuran-7-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0026uM
(5-amino-2-pyridinyl)-[9-[(3,3-difluoro-2,2-dimethyl-1-benzofuran-7-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0026uM
(5-amino-2-pyridinyl)-[9-[(2-tert-butyl-2-methyl-3H-1-benzofuran-4-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0028uM
N-[4-[[1-(azetidine-1-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0035uM
2-[4-[[1-[[3-(2-chlorophenoxy)phenyl]methyl]piperidin-4-yl]carbamoyl]-4-phenylpiperidin-1-yl]-2-methylpropanoic acid264168: Inhibition of I309-induced chemotaxis in L1.2 cells expressing CCR8ic500.0040uM
2-methyl-N-[4-[[1-(4-methylpiperazine-1-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]benzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0040uM
N-[2,5-dimethyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]-2-methylbenzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0040uM
N-[4-[[1-(2-aminoacetyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0041uM
3-pyrrolidin-1-ylpropyl 4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxylate277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0042uM
2-methyl-N-[4-[[1-(piperidine-1-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0042uM
N-[4-(cyclohexylsulfamoyl)naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0044uM
[9-[[3-(2-methoxyphenoxy)phenyl]methyl]-3,9-diazaspiro[5.5]undecan-3-yl]-pyrimidin-4-ylmethanone442859: Antagonist activity at human CCR8ic500.0049uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-3-methylbenzamide277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0051uM
ethyl 4-[[4-[(2-methylphenyl)carbamoyl]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxylate277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0052uM
N-[4-[[1-(2-hydroxyacetyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0054uM
(2-amino-4-pyridinyl)-[9-[(2,2-dimethylchromen-8-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0056uM
N-[5-chloro-2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]-2-methylbenzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0060uM
N-[5-fluoro-2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]-2-methylbenzamide2029995: Antagonist activity against CCR8 (unknown origin) expressed in CHO-K1 cells preincubated for 1 hr followed by CCL1 addition measured after 24 hrs by ONE-Glo assayic500.0060uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]cyclohexanecarboxamide277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0061uM
2-methyl-N-[4-[[1-(morpholine-4-carbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]benzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0063uM
(2-amino-4-pyridinyl)-[9-[(2,2-dimethyl-1,3-benzodioxol-4-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0066uM
N-[4-[(1-acetylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0067uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-4-tert-butylbenzamide277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0069uM
N-[4-[[1-(cyclopropanecarbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0072uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-2-phenylbutanamide277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0076uM
(5-amino-2-pyridinyl)-[9-[(2,2-dimethyl-3H-1-benzofuran-4-yl)methyl]-3,9-diazaspiro[5.5]undecan-3-yl]methanone442859: Antagonist activity at human CCR8ic500.0081uM
2-methyl-N-[2-methyl-4-[[(1R)-1-(1-methylpiperidin-4-yl)ethyl]sulfamoyl]phenyl]benzamide2030002: Inhibition of CCR8 (unknown origin)-mediated beta-arrestin downstream signalling in CCL1-induced CHO cells assessed as beta-lactamase level by Tango assayic500.0084uM
N-[4-[[1-(cyclopentanecarbonyl)piperidin-4-yl]sulfamoyl]naphthalen-1-yl]-2-methylbenzamide277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0091uM
ethyl 4-[[4-(cyclohexylcarbamoyl)naphthalen-1-yl]sulfonylamino]piperidine-1-carboxylate277746: Binding affinity to human CCR8 expressed in L1.2 cells by FMAT assayki0.0095uM
N-[4-[(1-butanoylpiperidin-4-yl)sulfamoyl]naphthalen-1-yl]-4-methylbenzamide277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0095uM
3-(dimethylamino)propyl 4-[[4-[(2-methylbenzoyl)amino]naphthalen-1-yl]sulfonylamino]piperidine-1-carboxylate277748: Antagonist activity against human CCR8 expressed in CHO/Galpha16 cells assessed as inhibition of CCL1-induced increase of intracellular calcium by FLIPR assayic500.0098uM

CTD chemical–gene interactions

23 total (human), top 23 by PubMed support.

ChemicalActions (top 5)PubMed papers
nickel sulfateaffects expression, increases expression2
fluorene-9-bisphenolincreases expression1
terbufosincreases methylation1
hydroxyhydroquinonedecreases expression1
zinc chloridedecreases expression1
ferrous sulfatedecreases expression1
benzo(e)pyreneincreases methylation1
aflatoxin B2increases methylation1
1-nitropyrenedecreases expression1
CGP 52608affects binding, increases reaction1
Arsenic Trioxidedecreases expression1
Arsenicaffects expression1
Benzo(a)pyreneincreases methylation1
Calciumaffects abundance1
Cyclophosphamidedecreases expression1
Fonofosincreases methylation1
Methapyrileneincreases methylation1
Parathionincreases methylation1
Silicon Dioxidedecreases expression1
Cyclosporineincreases methylation1
Aflatoxin B1decreases methylation1
Antirheumatic Agentsdecreases expression1
Sootdecreases expression1

ChEMBL screening assays

41 unique, capped per target: 23 binding, 18 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1045844FunctionalAntagonist activity at human CCR8Increasing selectivity of CC chemokine receptor 8 antagonists by engineering nondesolvation related interactions with the intended and off-target binding sites. — J Med Chem
CHEMBL2039639BindingInhibition of human CCR8 by FLIPR analysisThe design and synthesis of novel, potent and orally bioavailable N-aryl piperazine-1-carboxamide CCR2 antagonists with very high hERG selectivity. — Bioorg Med Chem Lett

Cellosaurus cell lines

10 cell lines: 5 cancer cell line, 3 spontaneously immortalized cell line, 2 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_1R22NP-2/CCR8Cancer cell lineMale
CVCL_1R28NP-2/CD4/CCR8Cancer cell lineMale
CVCL_C8V84DE4-CCR8Cancer cell line
CVCL_E6A2CHO-CCR8Spontaneously immortalized cell lineFemale
CVCL_E6ACHEK293-CCR8Transformed cell lineFemale
CVCL_E6P6Genomeditech CHO-K1 H_CCR8Spontaneously immortalized cell lineFemale
CVCL_E6TDGenomeditech HEK-293 H_CCR8Transformed cell lineFemale
CVCL_E6VPGenomeditech Jurkat H_CCR8Cancer cell lineMale
CVCL_KW62PathHunter CHO-K1 CCR8 beta-arrestinSpontaneously immortalized cell lineFemale
CVCL_S494GHOST(3).CCR8Cancer cell lineFemale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.