CD200R1L-AS1

Summary

CD200R1L-AS1 (CD200R1L antisense RNA 1, HGNC:54071) is a long non-coding RNA gene on chromosome 3q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54071
Approved symbol	CD200R1L-AS1
Name	CD200R1L antisense RNA 1
Location	3q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242770
Ensembl biotype	lncRNA
Entrez	100129297
RNAcentral	URS0000BC442A — lncRNA, 851 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 2 lncRNA, 1 retained_intron

ENST00000496067, ENST00000519700, ENST00000769851

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000496067 — 3 exons

Exon	Start	End
ENSE00002109651	112803066	112803161
ENSE00002116943	112812760	112812819
ENSE00002135876	112802478	112802648

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 67.73.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0385 / max 18.6078, expressed in 13 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
37945	0.0225	13
37944	0.0103	4
37943	0.0057	1

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	67.73	gold quality
gall bladder	UBERON:0002110	62.14	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.19	gold quality
superior frontal gyrus	UBERON:0002661	59.53	gold quality
kidney	UBERON:0002113	58.28	gold quality
monocyte	CL:0000576	55.20	gold quality
blood	UBERON:0000178	54.47	gold quality
lung	UBERON:0002048	53.92	gold quality
prefrontal cortex	UBERON:0000451	52.44	gold quality
endometrium	UBERON:0001295	52.43	gold quality
upper lobe of left lung	UBERON:0008952	52.01	gold quality
smooth muscle tissue	UBERON:0001135	50.63	gold quality
minor salivary gland	UBERON:0001830	50.35	gold quality
body of pancreas	UBERON:0001150	49.63	gold quality
putamen	UBERON:0001874	49.47	gold quality
left adrenal gland cortex	UBERON:0035825	49.21	gold quality
stomach	UBERON:0000945	48.51	gold quality
myometrium	UBERON:0001296	48.32	gold quality
tibial artery	UBERON:0007610	47.84	gold quality
frontal cortex	UBERON:0001870	47.63	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.55	gold quality
body of stomach	UBERON:0001161	47.37	gold quality
Ammon’s horn	UBERON:0001954	47.10	gold quality
corpus callosum	UBERON:0002336	47.07	silver quality
tonsil	UBERON:0002372	46.60	gold quality
gastrocnemius	UBERON:0001388	46.59	silver quality
ascending aorta	UBERON:0001496	46.59	gold quality
amygdala	UBERON:0001876	46.57	gold quality
thoracic aorta	UBERON:0001515	46.09	gold quality
cerebral cortex	UBERON:0000956	45.94	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.