CD24
gene geneOn this page
Also known as CD24A
Summary
CD24 (CD24 molecule, HGNC:1645) is a protein-coding gene on chromosome 6q21, encoding Signal transducer CD24 (P25063). May have a pivotal role in cell differentiation of different cell types.
This gene encodes a sialoglycoprotein that is expressed on mature granulocytes and B cells and modulates growth and differentiation signals to these cells. The precursor protein is cleaved to a short 32 amino acid mature peptide which is anchored via a glycosyl phosphatidylinositol (GPI) link to the cell surface. This gene was missing from previous genome assemblies, but is properly located on chromosome 6. Non-transcribed pseudogenes have been designated on chromosomes 1, 15, 20, and Y. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 100133941 — RefSeq curated summary.
At a glance
- MANE Select transcript:
NM_001359084
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:1645 |
| Approved symbol | CD24 |
| Name | CD24 molecule |
| Location | 6q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD24A |
| Ensembl gene | ENSG00000272398 |
| Ensembl biotype | protein_coding |
| OMIM | 600074 |
| Entrez | 100133941 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 7 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000606017, ENST00000610952, ENST00000615659, ENST00000619133, ENST00000619869, ENST00000620405, ENST00000621311, ENST00000622315
RefSeq mRNA: 5 — MANE Select: NM_001359084
NM_001291737, NM_001291738, NM_001291739, NM_001359084, NM_013230
CCDS: CCDS75499, CCDS78166
Canonical transcript exons
ENST00000606017 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003696480 | 106974578 | 106974729 |
| ENSE00003891022 | 106969831 | 106971834 |
Expression profiles
Bgee: expression breadth ubiquitous, 280 present calls, max score 99.94.
FANTOM5 (CAGE): breadth broad, TPM avg 152.2837 / max 6846.6717, expressed in 902 samples.
FANTOM5 promoters (16 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 204130 | 146.7120 | 521 |
| 204132 | 2.2038 | 686 |
| 204123 | 0.5036 | 198 |
| 204131 | 0.4516 | 189 |
| 204128 | 0.4148 | 192 |
| 204138 | 0.3647 | 100 |
| 204135 | 0.3303 | 193 |
| 204122 | 0.2894 | 145 |
| 204133 | 0.2506 | 154 |
| 204134 | 0.1971 | 130 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 99.94 | gold quality |
| renal medulla | UBERON:0000362 | 99.94 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 99.92 | gold quality |
| bronchus | UBERON:0002185 | 99.91 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.90 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.88 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 99.88 | gold quality |
| oral cavity | UBERON:0000167 | 99.87 | gold quality |
| parotid gland | UBERON:0001831 | 99.86 | gold quality |
| squamous epithelium | UBERON:0006914 | 99.86 | gold quality |
| gingiva | UBERON:0001828 | 99.85 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.85 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 99.84 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 99.82 | gold quality |
| ileal mucosa | UBERON:0000331 | 99.82 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 99.81 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 99.79 | gold quality |
| gall bladder | UBERON:0002110 | 99.79 | gold quality |
| cortical plate | UBERON:0005343 | 99.79 | gold quality |
| oviduct epithelium | UBERON:0004804 | 99.78 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 99.78 | gold quality |
| pancreatic ductal cell | CL:0002079 | 99.77 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.76 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.75 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 99.75 | gold quality |
| thyroid gland | UBERON:0002046 | 99.73 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 99.71 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.71 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.71 | gold quality |
| embryo | UBERON:0000922 | 99.69 | gold quality |
Single-cell (SCXA)
Detected in 64 experiment(s), a significant marker in 56.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10885 | yes | 5784.88 |
| E-HCAD-1 | yes | 4576.50 |
| E-GEOD-114530 | yes | 4125.75 |
| E-MTAB-10855 | yes | 4114.86 |
| E-MTAB-5061 | yes | 3974.37 |
| E-GEOD-93593 | yes | 3441.01 |
| E-MTAB-8142 | yes | 3168.29 |
| E-GEOD-86618 | yes | 3157.62 |
| E-GEOD-124472 | yes | 2994.88 |
| E-GEOD-125970 | yes | 2850.15 |
| E-MTAB-10596 | yes | 2797.27 |
| E-CURD-7 | yes | 2577.22 |
| E-CURD-112 | yes | 2303.71 |
| E-HCAD-10 | yes | 2163.48 |
| E-CURD-88 | yes | 2153.14 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, ESR1, GLI1, HIF1A, HLX, HOXC11, JUN, KDM5A, MBD2, NCOA1, NFAT5, NR1H3, SATB2, STAT5A, TCF4, TCF7L2, TWIST1, TWIST2
miRNA regulators (miRDB)
73 targeting CD24, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-4255 | 99.72 | 67.70 | 1541 |
| HSA-MIR-4422 | 99.72 | 72.07 | 2908 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-26A-1-3P | 99.64 | 66.81 | 788 |
| HSA-MIR-26A-2-3P | 99.64 | 66.82 | 786 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-4261 | 99.59 | 70.30 | 3415 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
| HSA-MIR-6758-3P | 99.57 | 67.55 | 1078 |
Literature-anchored findings (GeneRIF, showing 40)
- The correlation between CD24 expression and invasiveness was calculated to be highly significant (PMID:12218294)
- is expressed in ovarian cancer and is a new independent prognostic marker of patient survival (PMID:12368195)
- assessment of expression on bone marrow neutrophilic granulocytes: a marker for myelocytic leukemia staging (PMID:12447971)
- CD24 mediates apoptosis in precursor-B acute lymphoblastic leukemia cell lines in the pro-B and pre-B stages accompanying activation of multiple caspases. (PMID:12496407)
- high level of CD24 expression is associated with nonsmall cell lung cancer (PMID:12610508)
- N-glycans of the mouse glycoprotein HSA and its human analogue CD24 from lymphoblastoma, neuroblastoma and astrocytoma cell lines as well as from mouse brain homogenate were analysed and compared to each other (PMID:12829373)
- Deficiency in function of the CD4(+)CD25(+) T-cell population may influence the pathogenesis of type 1 diabetes. (PMID:15616015)
- Overexpression of CD24 is associated with intrahepatic cholangiocarcinoma (PMID:16125303)
- CD24 constitutes an important molecular marker for various epithelial neoplasms (PMID:16164042)
- CD24 is commonly up-regulated in colorectal cancer and is a new independent prognostic marker. (PMID:16166435)
- CD24 expression was upregulated in chordoma, while it was absent in chondrosarcoma (PMID:16288985)
- CD80-CD24 molecule spontaneously incorporated onto cell membrane through its glycolipid anchor suggesting that this hybrid costimulatory molecule can be used in protein transfer to develop effective cancer vaccines (PMID:16621031)
- Over-expression of CD24 is associated with primary and relapsed ovarian cancer (PMID:16681720)
- CD24 is overexpressed in the colonic mucosa, already at an early stage of carcinogenesis. It may be a useful target for early detection and in CRC therapy. (PMID:16890615)
- The study documented that cytoplasmic-membranous expression of CD24 represented an extremely strong unfavourable prognostic factor in breast cancer. (PMID:16892043)
- association between the V/V genotype at aa 57 of this gene and multiple sclerosis in Basque natives (PMID:16900767)
- CD24 regulates E-cadherin and TGF-beta3 expression in cultured oral epithelial cells (PMID:16930538)
- A destabilizing dinucleotide deletion in the 3’ UTR of CD24 mRNA conveys significant protection against both multiple sclerosis and systemic lupus erythematosus. (PMID:17411341)
- CD24 is modulated by IGFBP-2 and contributes to IGFBP-2-enhanced invasiveness of glioblastoma cells (PMID:17475624)
- CD24 deficient breast cancer cells are successful in overcoming an engraftment incompatibility that exists when injecting human cells into mouse adipose tissue. (PMID:17540049)
- CD24 is not essential for exosome formation or release but may be a convenient exosome marker. Our studies suggest that exosomal secretion from the embryonic kidney could play a biological role at the fetal-maternal interphase. (PMID:17700640)
- findings suggest that the CD24 A57V polymorphism plays a role in susceptibility to systemic lupus erythematosus in a Spanish population (PMID:17763438)
- Study identifies CD24 and EpCAM as cargo proteins of exosomes of cultured ovarian cancer cell lines and malignant ascites. (PMID:17900673)
- A decrease in CD4+CD25+ T cell numbers in mitral stenosis patients might suggest a role for cellular autoimmunity in a smoldering rheumatic process. (PMID:17944116)
- High CD24 is associated with neoplasm invasiveness in breast cancer (PMID:17950993)
- CD24 acts as a gate-keeper for lipid rafts, thereby regulating the activity of integrins and other proteins (PMID:17980703)
- There is a potential role for the CD24 gene in the susceptibility to giant cell arteritis in our population in Spain. (PMID:18381780)
- CD24 expression in clear cell renal cell carcinoma may be associated with high nuclear grade, large tumor size, and shortened progression-free survival (PMID:18384848)
- CD24 is repressed by estrogen and this repression is a direct transcriptional effect depending on ER alpha and histone deacetylases. (PMID:18404683)
- As a putative new oncogene that is overexpressed in gastrointestinal malignancies early in the carcinogenesis process, CD24 my be a potential target for early intervention in the prevention and treatment of cancer. (PMID:18413748)
- low expression of CD24 may cause the enhanced immune reaction and could play a role in the abnormal development of placenta in pre-eclampsia (PMID:18417991)
- In breast tissue, CD44(+)/CD24(-/low) tumor cells seem to be associated with lack of lymph node metastasis and a tendency toward an increase of the relapse-free survival of the patients. (PMID:18495204)
- analysis of CD44 and CD24 expression in breast tumors (PMID:18559090)
- MOG specific T cells (2D2) will escape clonal deletion and can result in spontaneous EAE. CD24 deficient MOG specific T cells (2D2CD24KO) are depleted from the thymic compartment, and the T cells in the periphery are CD4 negative. (PMID:18566397)
- CD44 but not CD24 may be involved in the breast cancer pathway and is a target for oncolytic virotherapy (PMID:18632604)
- Overexpression of CD24 is associated with prostate cancer. (PMID:18752058)
- Expression of CD24, P-cadherin and S100A4 in tumors of the ampulla of Vater. (PMID:19043399)
- Overexpression of CD24 is associated with esophageal squamous cell carcinoma. (PMID:19050962)
- CD24 appears to be highly expressed in a large variety of human cancers and to contribute to the acceleration of tumor growth and metastases shedding by binding to platelet (P)-selectin (PMID:19072375)
- Enhanced CD24 expression in endometrial carcinoma and its expression pattern in normal and hyperplastic endometrium are reported. (PMID:19130400)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Cd24a | ENSMUSG00000047139 |
| rattus_norvegicus | Cd24 | ENSRNOG00000000321 |
Protein
Protein identifiers
Signal transducer CD24 — P25063 (reviewed: P25063)
Alternative names: Small cell lung carcinoma cluster 4 antigen
All UniProt accessions (4): A0A087WU21, A0A087WU87, A0A087WW33, P25063
UniProt curated annotations — full annotation on UniProt →
Function. May have a pivotal role in cell differentiation of different cell types. Signaling could be triggered by the binding of a lectin-like ligand to the CD24 carbohydrates, and transduced by the release of second messengers derived from the GPI-anchor. Modulates B-cell activation responses. Promotes AG-dependent proliferation of B-cells, and prevents their terminal differentiation into antibody-forming cells. In association with SIGLEC10 may be involved in the selective suppression of the immune response to danger-associated molecular patterns (DAMPs) such as HMGB1, HSP70 and HSP90. Plays a role in the control of autoimmunity.
Subunit / interactions. Interacts with LYN and FGR in a cell-type specific manner. Binds FRG in a small cell cancer line, LYN in the erythroleukemia cell line K-562 and in Burkitt’s lymphoma.
Subcellular location. Cell membrane.
Tissue specificity. B-cells. Expressed in a number of B-cell lines including P32/ISH and Namalwa. Expressed in erythroleukemia cell and small cell lung carcinoma cell lines. Also expressed on the surface of T-cells.
Post-translational modifications. Extensively O-glycosylated.
Disease relevance. Multiple sclerosis (MS) [MIM:126200] A multifactorial, inflammatory, demyelinating disease of the central nervous system. Sclerotic lesions are characterized by perivascular infiltration of monocytes and lymphocytes and appear as indurated areas in pathologic specimens (sclerosis in plaques). The pathological mechanism is regarded as an autoimmune attack of the myelin sheath, mediated by both cellular and humoral immunity. Clinical manifestations include visual loss, extra-ocular movement disorders, paresthesias, loss of sensation, weakness, dysarthria, spasticity, ataxia and bladder dysfunction. Genetic and environmental factors influence susceptibility to the disease. Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Induction. Expression is lost when primary B-cells are induced to differentiate in antibody-forming cells.
Similarity. Belongs to the CD24 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P25063-1 | 1 | yes |
| P25063-2 | 2 |
RefSeq proteins (5): NP_001278666, NP_001278667, NP_001278668, NP_001346013, NP_037362 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR028029 | CD24 | Family |
Pfam: PF14984
UniProt features (12 total): sequence conflict 2, glycosylation site 2, sequence variant 2, signal peptide 1, peptide 1, propeptide 1, region of interest 1, lipid moiety-binding region 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P25063-F1 | 64.49 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 59
Glycosylation sites (2): 36, 52
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-373760 | L1CAM interactions |
| R-HSA-9927418 | Developmental Lineage of Mammary Gland Luminal Epithelial Cells |
| R-HSA-9927426 | Developmental Lineage of Mammary Gland Alveolar Cells |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-422475 | Axon guidance |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 401 (showing top):
GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_CELL_ACTIVATION, MODULE_52, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, LOPEZ_MESOTHELIOMA_SURVIVAL_DN, GOBP_EPITHELIUM_DEVELOPMENT, TSENG_IRS1_TARGETS_UP, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOBP_RESPONSE_TO_PEPTIDE, GOBP_STEROL_HOMEOSTASIS, JAEGER_METASTASIS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_LYMPHOCYTE_COSTIMULATION, GOCC_CELL_SURFACE, GOBP_KIDNEY_EPITHELIUM_DEVELOPMENT
GO Biological Process (25): response to hypoxia (GO:0001666), cell activation (GO:0001775), regulation of cytokine-mediated signaling pathway (GO:0001959), response to molecule of bacterial origin (GO:0002237), immune response-regulating cell surface receptor signaling pathway (GO:0002768), positive regulation of cytosolic calcium ion concentration (GO:0007204), Wnt signaling pathway (GO:0016055), cell migration (GO:0016477), regulation of cell-cell adhesion (GO:0022407), regulation of epithelial cell differentiation (GO:0030856), T cell costimulation (GO:0031295), B cell receptor transport into membrane raft (GO:0032597), chemokine receptor transport out of membrane raft (GO:0032600), negative regulation of transforming growth factor beta3 production (GO:0032913), positive regulation of activated T cell proliferation (GO:0042104), cholesterol homeostasis (GO:0042632), regulation of MAPK cascade (GO:0043408), response to estrogen (GO:0043627), respiratory burst (GO:0045730), podocyte differentiation (GO:0072112), glomerular parietal epithelial cell differentiation (GO:0072139), intrinsic apoptotic signaling pathway (GO:0097193), cell-cell adhesion (GO:0098609), positive regulation of nephron tubule epithelial cell differentiation (GO:2000768), cell adhesion (GO:0007155)
GO Molecular Function (3): protein kinase binding (GO:0019901), protein tyrosine kinase activator activity (GO:0030296), protein binding (GO:0005515)
GO Cellular Component (6): external side of plasma membrane (GO:0009897), cell surface (GO:0009986), membrane (GO:0016020), membrane raft (GO:0045121), plasma membrane (GO:0005886), side of membrane (GO:0098552)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Developmental Lineages of the Mammary Gland | 2 |
| Axon guidance | 1 |
| Nervous system development | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cell surface receptor signaling pathway | 2 |
| membrane | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| cellular process | 1 |
| multicellular organismal process | 1 |
| regulation of signal transduction | 1 |
| cytokine-mediated signaling pathway | 1 |
| regulation of response to cytokine stimulus | 1 |
| response to bacterium | 1 |
| response to external biotic stimulus | 1 |
| immune response-regulating signaling pathway | 1 |
| regulation of biological quality | 1 |
| cell motility | 1 |
| regulation of cell adhesion | 1 |
| cell-cell adhesion | 1 |
| epithelial cell differentiation | 1 |
| regulation of cell differentiation | 1 |
| regulation of multicellular organismal development | 1 |
| lymphocyte costimulation | 1 |
| positive regulation of T cell activation | 1 |
| B cell receptor transport within lipid bilayer | 1 |
| protein transport into membrane raft | 1 |
| protein transport out of membrane raft | 1 |
| chemokine receptor transport within lipid bilayer | 1 |
| transforming growth factor beta3 production | 1 |
| regulation of transforming growth factor beta3 production | 1 |
| negative regulation of transforming growth factor beta production | 1 |
| positive regulation of T cell proliferation | 1 |
| regulation of activated T cell proliferation | 1 |
| activated T cell proliferation | 1 |
| sterol homeostasis | 1 |
| MAPK cascade | 1 |
| regulation of intracellular signal transduction | 1 |
| response to hormone | 1 |
| metabolic process | 1 |
| renal filtration cell differentiation | 1 |
| glomerular epithelial cell differentiation | 1 |
| kinase binding | 1 |
Protein interactions and networks
STRING
2672 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CD24 | SIGLEC10 | Q96LC7 | 998 |
| CD24 | SELP | P16109 | 994 |
| CD24 | HMGB1 | P09429 | 991 |
| CD24 | CD44 | P16070 | 899 |
| CD24 | SELE | P16111 | 892 |
| CD24 | EPCAM | P16422 | 883 |
| CD24 | SIRPA | P78324 | 880 |
| CD24 | PROM1 | O43490 | 877 |
| CD24 | L1CAM | P32004 | 849 |
| CD24 | PECAM1 | P16284 | 848 |
| CD24 | ALDH1A1 | P00352 | 815 |
| CD24 | EGFR | P00533 | 806 |
| CD24 | CD19 | P15391 | 785 |
| CD24 | CD38 | P28907 | 784 |
| CD24 | PTPRC | P08575 | 780 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LYN | CD24 | psi-mi:“MI:0914”(association) | 0.500 |
| CD24 | LYN | psi-mi:“MI:0915”(physical association) | 0.500 |
| LYN | CD24 | psi-mi:“MI:0915”(physical association) | 0.500 |
| CD24 | SELP | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (8): NPM1 (Affinity Capture-MS), NPM1 (Affinity Capture-Western), CD24 (Affinity Capture-Western), CD24 (Reconstituted Complex), FGR (Affinity Capture-Western), LYN (Affinity Capture-Western), SELP (Reconstituted Complex), CD24 (Affinity Capture-MS)
ESM2 similar proteins: A0MLS4, A2BDG0, A2BDG5, A2BDG9, A2RRL7, A3KN25, A6NGB7, G1TZA0, O14669, O77751, O77801, O95868, P01286, P02820, P02822, P0DUJ6, P24807, P25063, P27177, P41547, P51460, P63292, P98162, Q01524, Q08DF2, Q1ECT8, Q1JPW9, Q496H8, Q58CU5, Q5CZK3, Q5G860, Q5G863, Q5HZE8, Q60549, Q64697, Q6BEG6, Q7TPG6, Q8C4W3, Q8R182, Q923S2
Diamond homologs: P24807, P25063, Q07490
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
0 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000269633 (6:106974081 C>G), RS1000635744 (6:106978818 G>A), RS1000863675 (6:106972628 G>A,C), RS1001358454 (6:106972304 T>C), RS1001642494 (6:106977427 C>T), RS1001878252 (6:106977711 G>A), RS1002643925 (6:106975919 T>C), RS1002884827 (6:106976211 T>C), RS1003742204 (6:106974596 T>C), RS1004117417 (6:106974414 G>A), RS1004717298 (6:106973243 T>G), RS1005151730 (6:106973455 G>C), RS1005537113 (6:106977769 C>T), RS1005750198 (6:106969755 A>T), RS1005784275 (6:106978028 A>G,T)
Disease associations
OMIM: gene MIM:600074 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other protein — CD molecules
CTD chemical–gene interactions
103 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects methylation, decreases expression, affects cotreatment, increases abundance | 5 |
| methylmercuric chloride | increases expression, affects cotreatment | 4 |
| Estradiol | affects cotreatment, decreases expression | 4 |
| bisphenol A | increases expression | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Valproic Acid | affects cotreatment, increases expression, affects expression | 3 |
| arsenite | affects binding, increases reaction, decreases methylation | 2 |
| cobaltous chloride | decreases expression, increases expression, decreases reaction | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Decitabine | decreases expression, decreases reaction, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Calcitriol | increases expression, affects cotreatment | 2 |
| Progesterone | affects cotreatment, decreases expression | 2 |
| Smoke | decreases expression, decreases reaction | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| aristolochic acid I | decreases expression | 1 |
| napabucasin | decreases expression | 1 |
| triptolide | decreases reaction, increases expression | 1 |
| methylparaben | increases expression | 1 |
| afimoxifene | increases expression | 1 |
| sulforaphane | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| ochratoxin A | decreases expression | 1 |
| didecyldimethylammonium | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| rutecarpine | decreases expression | 1 |
| ferrous chloride | increases expression | 1 |
Cellosaurus cell lines
10 cell lines: 9 cancer cell line, 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E6PD | Genomeditech CHO-K1 H_CD24 | Spontaneously immortalized cell line | Female |
| CVCL_E6WB | Genomeditech MC-38 H_CD24 | Cancer cell line | Female |
| CVCL_SH60 | HAP1 CD24 (-) 1 | Cancer cell line | Male |
| CVCL_SH61 | HAP1 CD24 (-) 2 | Cancer cell line | Male |
| CVCL_SH62 | HAP1 CD24 (-) 3 | Cancer cell line | Male |
| CVCL_SH63 | HAP1 CD24 (-) 4 | Cancer cell line | Male |
| CVCL_SH64 | HAP1 CD24 (-) 5 | Cancer cell line | Male |
| CVCL_SH65 | HAP1 CD24 (-) 6 | Cancer cell line | Male |
| CVCL_SH66 | HAP1 CD24 (-) 7 | Cancer cell line | Male |
| CVCL_SH67 | HAP1 CD24 (-) 8 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.